Wall clock time and date at job start Mon Mar 30 2020 03:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99704 * 2 1 4 4 C 1.53003 * 109.47209 * 216.60809 * 3 2 1 5 5 C 1.53010 * 109.46873 * 63.66154 * 4 3 2 6 6 C 1.52995 * 109.47481 * 183.66067 * 4 3 2 7 7 N 1.46894 * 109.47065 * 303.66452 * 4 3 2 8 8 C 1.46898 * 110.99715 * 123.94780 * 2 1 3 9 9 C 1.53005 * 109.47093 * 69.93253 * 8 2 1 10 10 C 1.50698 * 115.55007 * 55.24574 * 9 8 2 11 11 H 1.08006 * 119.99960 * 245.90282 * 10 9 8 12 12 C 1.37881 * 119.99940 * 65.63369 * 10 9 8 13 13 N 1.31519 * 119.99813 * 0.58843 * 12 10 9 14 14 Si 1.86798 * 119.99770 * 180.59097 * 12 10 9 15 15 H 1.48498 * 109.47427 * 59.99977 * 14 12 10 16 16 H 1.48503 * 109.46703 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47002 * 299.99712 * 14 12 10 18 18 C 1.52996 * 117.49877 * 200.91926 * 9 8 2 19 19 C 1.53000 * 117.49451 * 269.58243 * 9 8 2 20 20 H 1.09000 * 109.47532 * 300.42660 * 1 2 3 21 21 H 1.09003 * 109.47323 * 60.43038 * 1 2 3 22 22 H 1.09002 * 109.47263 * 180.42974 * 1 2 3 23 23 H 1.09004 * 109.47183 * 336.61096 * 3 2 1 24 24 H 1.09005 * 109.47467 * 96.61133 * 3 2 1 25 25 H 1.08997 * 109.47046 * 64.92191 * 5 4 3 26 26 H 1.08992 * 109.46806 * 184.92327 * 5 4 3 27 27 H 1.09003 * 109.46678 * 304.92417 * 5 4 3 28 28 H 1.08998 * 109.46969 * 59.99919 * 6 4 3 29 29 H 1.08998 * 109.47291 * 180.02562 * 6 4 3 30 30 H 1.09008 * 109.47156 * 299.99982 * 6 4 3 31 31 H 1.00897 * 111.00095 * 313.30776 * 7 4 3 32 32 H 1.00902 * 111.00491 * 77.26269 * 7 4 3 33 33 H 1.08996 * 109.47926 * 309.92766 * 8 2 1 34 34 H 1.09003 * 109.47019 * 189.92449 * 8 2 1 35 35 H 0.96997 * 119.99748 * 184.94287 * 13 12 10 36 36 H 1.08998 * 117.49958 * 214.99853 * 18 9 8 37 37 H 1.08999 * 117.50099 * 0.02562 * 18 9 8 38 38 H 1.09003 * 117.49956 * 359.96919 * 19 9 8 39 39 H 1.08998 * 117.49924 * 144.97485 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.2592 1.4327 -0.8602 5 6 2.9043 1.1046 -2.3120 6 6 3.8585 2.8385 -0.7869 7 7 4.2378 0.4566 -0.3628 8 6 1.9954 -0.7659 1.1377 9 6 1.7160 -2.2548 0.9231 10 6 2.2323 -2.8334 -0.3690 11 1 1.5388 -3.1889 -1.1168 12 6 3.5900 -2.9038 -0.5990 13 7 4.4346 -2.4766 0.3141 14 14 4.2295 -3.6058 -2.2076 15 1 3.7153 -2.7953 -3.3407 16 1 5.7141 -3.5700 -2.2077 17 1 3.7677 -5.0096 -2.3534 18 6 1.7257 -3.1603 2.1563 19 6 0.4013 -2.8130 1.4717 20 1 -0.3634 0.5204 0.8861 21 1 -0.3634 0.5071 -0.8938 22 1 -0.3634 -1.0276 0.0077 23 1 1.2449 2.0487 -0.4080 24 1 2.2360 1.6683 1.0209 25 1 2.2462 1.8776 -2.7087 26 1 3.8158 1.0623 -2.9081 27 1 2.3980 0.1402 -2.3532 28 1 4.1112 3.0722 0.2473 29 1 4.7585 2.8822 -1.4001 30 1 3.1322 3.5628 -1.1561 31 1 4.3266 0.5128 0.6407 32 1 3.9949 -0.4789 -0.6525 33 1 1.5099 -0.4336 2.0552 34 1 3.0707 -0.6058 1.2171 35 1 5.3858 -2.4593 0.1247 36 1 2.1055 -4.1745 2.0331 37 1 1.9307 -2.6952 3.1206 38 1 -0.2643 -2.1197 1.9858 39 1 -0.0903 -3.5986 0.8978 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691981488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:26 Heat of formation + Delta-G solvation = 13.656763 kcal Electronic energy + Delta-G solvation = -17417.395978 eV Core-core repulsion = 14974.137635 eV Total energy + Delta-G solvation = -2443.258343 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.90813 -37.93325 -35.40928 -33.90974 -30.32478 -28.31801 -27.99988 -27.74599 -27.04492 -23.04595 -22.89740 -20.79046 -19.97592 -17.92032 -16.57342 -16.34874 -16.28251 -15.97665 -15.53254 -15.36427 -14.83890 -14.42497 -13.96709 -13.43936 -13.26996 -12.95980 -12.82898 -12.76943 -12.65903 -12.54136 -12.44800 -12.27845 -12.12965 -11.91650 -11.90777 -11.56055 -11.13759 -10.76108 -10.34794 -9.86589 -9.25288 -8.69741 -7.93274 -5.97619 1.46621 1.51286 1.54524 2.53638 3.14020 3.36021 3.65249 3.89616 4.14260 4.34232 4.39525 4.39953 4.51339 4.57242 4.67843 4.70351 4.76007 4.80039 4.93531 4.94774 4.97627 5.08054 5.14766 5.19477 5.21664 5.25286 5.36502 5.47969 5.60411 5.63641 5.73009 5.97241 6.39628 6.52872 6.64516 6.78930 6.99077 7.04147 7.64271 9.12335 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.014332 C = 0.010136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.894311 B = 1953.221235 C = 2761.788723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.527 5.527 3 C 0.031 3.969 4 C 0.113 3.887 5 C -0.129 4.129 6 C -0.126 4.126 7 N -0.848 5.848 8 C 0.103 3.897 9 C 0.046 3.954 10 C -0.471 4.471 11 H 0.039 0.961 12 C 0.047 3.953 13 N -0.890 5.890 14 Si 0.922 3.078 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.283 1.283 18 C -0.186 4.186 19 C -0.193 4.193 20 H 0.018 0.982 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.323 0.677 32 H 0.364 0.636 33 H -0.006 1.006 34 H 0.079 0.921 35 H 0.258 0.742 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 8.388 -0.574 9.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.250 5.250 3 C -0.099 4.099 4 C 0.019 3.981 5 C -0.186 4.186 6 C -0.184 4.184 7 N -0.384 5.384 8 C -0.025 4.025 9 C 0.045 3.955 10 C -0.509 4.509 11 H 0.057 0.943 12 C -0.153 4.153 13 N -0.529 5.529 14 Si 0.750 3.250 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.209 1.209 18 C -0.225 4.225 19 C -0.230 4.230 20 H 0.036 0.964 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.136 0.864 32 H 0.183 0.817 33 H 0.012 0.988 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.657 8.496 -1.419 9.358 hybrid contribution -0.561 -0.777 0.611 1.136 sum -4.217 7.720 -0.808 8.833 Atomic orbital electron populations 1.22397 0.87742 1.01842 0.99616 1.61627 1.07428 1.11953 1.43981 1.22923 0.98730 0.89910 0.98347 1.20895 0.89337 0.93349 0.94516 1.21688 1.00377 1.01645 0.94937 1.21718 1.00815 0.94381 1.01469 1.59349 1.50646 1.12322 1.16108 1.21727 0.99814 0.93181 0.87814 1.18858 0.93951 0.90316 0.92388 1.20319 0.90957 1.38951 1.00716 0.94263 1.25162 0.96948 0.95661 0.97487 1.69929 1.02370 1.47590 1.33017 0.86195 0.77134 0.78745 0.82889 1.20409 1.21492 1.20937 1.22701 1.01475 1.00848 0.97465 1.22942 0.90950 1.03826 1.05316 0.96370 0.91195 0.91941 0.90365 0.95368 0.91135 0.93929 0.93648 0.93220 0.92652 0.91064 0.86427 0.81652 0.98760 0.90325 0.93203 0.91922 0.91275 0.89993 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 9.11 127.69 1.16 2.24 16 2 N -0.53 -20.10 3.38 -922.43 -3.12 -23.22 16 3 C 0.03 1.02 4.23 86.30 0.36 1.38 16 4 C 0.11 3.82 1.07 3.53 0.00 3.82 16 5 C -0.13 -4.40 8.52 71.99 0.61 -3.79 16 6 C -0.13 -3.44 8.80 71.98 0.63 -2.81 16 7 N -0.85 -34.49 8.16 -151.56 -1.24 -35.73 16 8 C 0.10 4.40 3.97 86.31 0.34 4.75 16 9 C 0.05 2.11 1.07 -52.93 -0.06 2.05 16 10 C -0.47 -24.36 8.53 25.60 0.22 -24.14 16 11 H 0.04 2.11 7.81 -2.91 -0.02 2.08 16 12 C 0.05 2.45 4.19 84.65 0.35 2.80 16 13 N -0.89 -46.49 10.78 21.45 0.23 -46.26 16 14 Si 0.92 43.06 29.54 68.60 2.03 45.09 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 18 C -0.19 -8.37 9.96 30.62 0.30 -8.07 16 19 C -0.19 -7.94 8.26 30.62 0.25 -7.69 16 20 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 21 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 22 H 0.06 2.25 5.91 -2.39 -0.01 2.24 16 23 H 0.08 2.22 7.66 -2.38 -0.02 2.20 16 24 H 0.03 0.93 7.75 -2.38 -0.02 0.91 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.82 7.58 -2.39 -0.02 1.80 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.32 13.40 7.23 -89.70 -0.65 12.76 16 32 H 0.36 16.86 4.81 -89.69 -0.43 16.43 16 33 H -0.01 -0.23 8.03 -2.39 -0.02 -0.25 16 34 H 0.08 3.66 4.07 -2.39 -0.01 3.65 16 35 H 0.26 13.44 8.32 -92.71 -0.77 12.67 16 36 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.08 3.02 8.05 -2.39 -0.02 3.00 16 39 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -52.45 299.46 2.04 -50.42 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -0.06 Total: 39.16 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 4.20 Total: -29.46 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -4.12 Total: -105.21 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -52.45 2.04 -50.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691981488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.073 kcal (2) G-P(sol) polarization free energy of solvation -52.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds