Wall clock time and date at job start Mon Mar 30 2020 03:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48536 * 110.99521 * 2 1 4 4 C 1.54942 * 103.22418 * 159.72350 * 3 2 1 5 5 H 1.08990 * 110.72581 * 80.94382 * 4 3 2 6 6 N 1.46905 * 110.72005 * 204.22675 * 4 3 2 7 7 C 1.46893 * 111.00001 * 273.54362 * 6 4 3 8 8 C 1.53000 * 109.47159 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47125 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00439 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00145 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46883 * 59.99915 * 13 11 9 15 15 H 1.48499 * 109.47199 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47255 * 300.00169 * 13 11 9 17 17 C 1.54591 * 102.91948 * 322.58184 * 4 3 2 18 18 C 1.47900 * 110.99996 * 117.39533 * 2 1 3 19 19 C 1.52998 * 109.91801 * 333.50744 * 18 2 1 20 20 C 1.52997 * 109.91823 * 94.80651 * 18 2 1 21 21 H 1.08997 * 109.47010 * 60.12563 * 1 2 3 22 22 H 1.09003 * 109.46716 * 180.12808 * 1 2 3 23 23 H 1.08999 * 109.47154 * 300.12302 * 1 2 3 24 24 H 1.09004 * 110.66813 * 278.15215 * 3 2 1 25 25 H 1.09000 * 110.66721 * 41.28713 * 3 2 1 26 26 H 1.00898 * 110.99909 * 37.49994 * 6 4 3 27 27 H 1.09008 * 109.47041 * 300.00263 * 7 6 4 28 28 H 1.08994 * 109.47175 * 59.99928 * 7 6 4 29 29 H 1.09001 * 109.46848 * 299.99444 * 8 7 6 30 30 H 1.09003 * 109.47462 * 59.99841 * 8 7 6 31 31 H 0.97004 * 120.00212 * 180.02562 * 12 11 9 32 32 H 1.09004 * 110.31236 * 263.04069 * 17 4 3 33 33 H 1.09002 * 110.39345 * 140.91928 * 17 4 3 34 34 H 1.09002 * 109.46856 * 61.45868 * 19 18 2 35 35 H 1.09000 * 109.46986 * 181.45491 * 19 18 2 36 36 H 1.08997 * 109.47531 * 301.45828 * 19 18 2 37 37 H 1.08999 * 109.47178 * 58.54056 * 20 18 2 38 38 H 1.08994 * 109.47323 * 178.54442 * 20 18 2 39 39 H 1.09000 * 109.47124 * 298.54713 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 0.5227 5 1 4.1115 0.8838 -0.2787 6 7 3.9384 2.4568 1.1276 7 6 4.5270 3.3395 0.1116 8 6 5.0247 4.6236 0.7782 9 6 5.6279 5.5294 -0.2642 10 1 5.6541 5.2201 -1.2987 11 6 6.1463 6.7532 0.1026 12 7 6.1149 7.1298 1.3623 13 14 6.8947 7.8758 -1.1894 14 1 5.8676 8.2120 -2.2078 15 1 7.3777 9.1222 -0.5425 16 1 8.0344 7.1853 -1.8449 17 6 3.2982 0.1055 1.5930 18 6 1.9990 -0.6353 1.2259 19 6 0.9839 -0.5018 2.3628 20 6 2.2984 -2.1120 0.9601 21 1 -0.3633 0.5119 -0.8911 22 1 -0.3633 -1.0277 0.0023 23 1 -0.3633 0.5157 0.8889 24 1 2.0040 1.7978 -1.0096 25 1 1.4236 2.0205 0.6729 26 1 3.2022 2.9271 1.6325 27 1 5.3634 2.8326 -0.3696 28 1 3.7731 3.5864 -0.6359 29 1 4.1884 5.1307 1.2596 30 1 5.7787 4.3764 1.5255 31 1 6.4793 7.9910 1.6203 32 1 3.2136 0.5487 2.5853 33 1 4.1467 -0.5777 1.5557 34 1 0.0617 -1.0140 2.0884 35 1 1.3923 -0.9493 3.2689 36 1 0.7745 0.5529 2.5410 37 1 3.0185 -2.1959 0.1462 38 1 2.7125 -2.5665 1.8600 39 1 1.3773 -2.6255 0.6845 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694177449.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:51 Heat of formation + Delta-G solvation = -5.408557 kcal Electronic energy + Delta-G solvation = -16048.930367 eV Core-core repulsion = 13604.845290 eV Total energy + Delta-G solvation = -2444.085077 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.91294 -35.76268 -33.07391 -32.38010 -30.96467 -28.21162 -27.37769 -25.71301 -24.56691 -23.49724 -20.73293 -20.44454 -18.81848 -16.36551 -16.01359 -15.43080 -14.90999 -14.57560 -14.39029 -13.65843 -13.57012 -13.33732 -12.92701 -12.67941 -12.54843 -12.10066 -11.83331 -11.74196 -11.54700 -11.20482 -11.12773 -11.05208 -10.90680 -10.80902 -10.52300 -10.36697 -9.98517 -9.33692 -9.14665 -8.46612 -8.34060 -7.78548 -5.98582 -4.01199 3.34522 3.38750 3.41259 3.88517 4.44799 4.55539 4.75449 4.80763 5.05114 5.12385 5.25279 5.34909 5.37288 5.38431 5.46240 5.52298 5.57484 5.71845 5.73875 5.82994 5.90602 5.94887 5.99898 6.18716 6.20542 6.35384 6.38349 6.44629 6.89138 6.98895 7.03631 7.51207 7.73586 7.83488 7.95814 8.09271 8.44693 9.05880 9.62549 11.12848 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.055704 B = 0.004640 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.538473 B = 6033.092541 C = 6148.754213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.510 5.510 3 C 0.006 3.994 4 C 0.087 3.913 5 H 0.087 0.913 6 N -0.681 5.681 7 C 0.066 3.934 8 C 0.025 3.975 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.113 4.113 18 C 0.083 3.917 19 C -0.167 4.167 20 C -0.126 4.126 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.033 0.967 24 H 0.079 0.921 25 H 0.044 0.956 26 H 0.335 0.665 27 H 0.059 0.941 28 H 0.016 0.984 29 H 0.013 0.987 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.462 -15.708 0.216 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.234 5.234 3 C -0.124 4.124 4 C -0.025 4.025 5 H 0.106 0.894 6 N -0.311 5.311 7 C -0.062 4.062 8 C -0.012 4.012 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.151 4.151 18 C -0.007 4.007 19 C -0.226 4.226 20 C -0.184 4.184 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.052 0.948 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.153 0.847 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.631 -16.107 0.051 18.767 hybrid contribution -0.804 1.510 -0.432 1.764 sum -10.435 -14.597 -0.381 17.948 Atomic orbital electron populations 1.22553 0.88642 1.01633 1.00759 1.64790 1.07683 1.14926 1.36025 1.24027 0.97160 0.89644 1.01581 1.22469 0.92853 0.91508 0.95668 0.89437 1.60671 1.36110 1.06122 1.28152 1.22184 0.96900 0.94701 0.92435 1.19069 0.96442 0.89607 0.96125 1.21144 1.38946 1.01774 0.94220 0.92795 1.24997 0.96056 0.97985 0.95268 1.69961 1.46159 1.21337 1.15861 0.86650 0.79629 0.80004 0.81657 1.20297 1.21273 1.20197 1.22551 0.95890 0.96979 0.99727 1.21864 0.94622 0.95579 0.88593 1.22426 0.99486 1.01770 0.98905 1.21727 1.01457 0.93758 1.01444 0.91779 0.91628 0.94820 0.90223 0.93738 0.84669 0.92271 0.96557 0.96910 0.95666 0.92947 0.90632 0.90863 0.92291 0.92002 0.92600 0.91910 0.92523 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.32 60.07 0.50 0.64 16 2 N -0.51 -6.32 5.17 -223.15 -1.15 -7.48 16 3 C 0.01 0.08 6.09 -1.89 -0.01 0.07 16 4 C 0.09 1.30 3.34 -65.85 -0.22 1.08 16 5 H 0.09 1.38 7.90 -51.93 -0.41 0.97 16 6 N -0.68 -12.18 6.30 -104.77 -0.66 -12.84 16 7 C 0.07 1.39 5.48 -3.83 -0.02 1.37 16 8 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 9 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 10 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 13 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C -0.11 -1.45 5.95 -25.37 -0.15 -1.60 16 18 C 0.08 0.94 0.89 -130.53 -0.12 0.83 16 19 C -0.17 -1.69 6.97 37.16 0.26 -1.43 16 20 C -0.13 -1.26 8.63 37.16 0.32 -0.94 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.61 7.86 -51.93 -0.41 0.20 16 23 H 0.03 0.34 6.16 -51.93 -0.32 0.02 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 26 H 0.34 5.84 8.30 -39.29 -0.33 5.51 16 27 H 0.06 1.27 8.09 -51.92 -0.42 0.85 16 28 H 0.02 0.34 8.13 -51.93 -0.42 -0.08 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.08 1.00 7.59 -51.93 -0.39 0.61 16 33 H 0.07 0.91 7.69 -51.93 -0.40 0.51 16 34 H 0.06 0.54 6.66 -51.93 -0.35 0.19 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.61 7.63 -51.93 -0.40 0.21 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -29.68 305.97 -8.65 -38.33 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.16 Total: 0.13 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 0.00 Total: -13.15 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -1.08 Total: -46.71 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.68 -8.65 -38.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694177449.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.917 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds