Wall clock time and date at job start Mon Mar 30 2020 03:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47836 * 111.00391 * 2 1 4 4 C 1.54905 * 104.80025 * 213.63693 * 3 2 1 5 5 H 1.09001 * 111.02452 * 278.96447 * 4 3 2 6 6 N 1.46899 * 110.99047 * 155.16160 * 4 3 2 7 7 C 1.46907 * 111.00018 * 92.73284 * 6 4 3 8 8 C 1.52995 * 109.47006 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.46908 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99823 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00025 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99980 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00197 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46967 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47125 * 120.00067 * 13 11 9 16 16 H 1.48495 * 109.47523 * 240.00571 * 13 11 9 17 17 C 1.55141 * 101.65148 * 37.07000 * 4 3 2 18 18 C 1.47448 * 110.99964 * 239.15902 * 2 1 3 19 19 C 1.53001 * 109.88973 * 242.66758 * 18 2 1 20 20 C 1.53001 * 109.88619 * 3.69129 * 18 2 1 21 21 H 1.09002 * 109.47401 * 180.83948 * 1 2 3 22 22 H 1.09001 * 109.46874 * 60.83961 * 1 2 3 23 23 H 1.09004 * 109.46970 * 300.84094 * 1 2 3 24 24 H 1.09002 * 110.37573 * 332.47383 * 3 2 1 25 25 H 1.09009 * 110.36990 * 94.80497 * 3 2 1 26 26 H 1.00898 * 111.00294 * 216.68719 * 6 4 3 27 27 H 1.08992 * 109.47068 * 300.00133 * 7 6 4 28 28 H 1.09004 * 109.46717 * 59.99856 * 7 6 4 29 29 H 1.08992 * 109.47674 * 300.00200 * 8 7 6 30 30 H 1.09004 * 109.47142 * 60.00555 * 8 7 6 31 31 H 0.96997 * 119.99658 * 179.97438 * 12 11 9 32 32 H 1.09000 * 110.70394 * 205.96331 * 17 4 3 33 33 H 1.09005 * 110.84932 * 82.79848 * 17 4 3 34 34 H 1.09000 * 109.47258 * 61.44881 * 19 18 2 35 35 H 1.08994 * 109.47141 * 181.45401 * 19 18 2 36 36 H 1.09003 * 109.47102 * 301.45274 * 19 18 2 37 37 H 1.09002 * 109.47167 * 58.54458 * 20 18 2 38 38 H 1.08995 * 109.47024 * 178.54559 * 20 18 2 39 39 H 1.08996 * 109.47305 * 298.54395 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3801 0.0000 4 6 3.3048 1.3026 -0.8296 5 1 4.1307 0.9283 -0.2247 6 7 3.6347 2.6089 -1.4149 7 6 4.5344 3.3677 -0.5358 8 6 4.8550 4.7189 -1.1779 9 6 5.7775 5.4975 -0.2757 10 1 6.1027 5.0711 0.6617 11 6 6.2069 6.7538 -0.6475 12 7 5.8112 7.2729 -1.7893 13 14 7.3509 7.7187 0.4704 14 1 7.6460 6.9185 1.6861 15 1 8.6168 8.0099 -0.2492 16 1 6.6998 8.9943 0.8629 17 6 2.9159 0.2821 -1.9315 18 6 1.9974 -0.7057 -1.1819 19 6 2.8007 -1.9308 -0.7406 20 6 0.8435 -1.1390 -2.0883 21 1 -0.3634 -1.0275 0.0151 22 1 -0.3633 0.5007 -0.8974 23 1 -0.3633 0.5269 0.8824 24 1 1.2890 2.0592 -0.4722 25 1 2.2148 1.7037 1.0183 26 1 4.0337 2.5023 -2.3355 27 1 4.0506 3.5286 0.4276 28 1 5.4576 2.8070 -0.3896 29 1 5.3390 4.5577 -2.1411 30 1 3.9319 5.2798 -1.3244 31 1 6.1131 8.1569 -2.0506 32 1 3.8001 -0.2280 -2.3137 33 1 2.3752 0.7725 -2.7411 34 1 2.1489 -2.6173 -0.2002 35 1 3.2094 -2.4325 -1.6177 36 1 3.6160 -1.6155 -0.0895 37 1 0.2715 -0.2624 -2.3925 38 1 1.2428 -1.6369 -2.9719 39 1 0.1941 -1.8265 -1.5463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694177453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:54 Heat of formation + Delta-G solvation = -3.767993 kcal Electronic energy + Delta-G solvation = -16022.180595 eV Core-core repulsion = 13578.166658 eV Total energy + Delta-G solvation = -2444.013937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.86327 -35.73537 -33.06952 -32.39911 -31.01550 -28.39696 -27.28944 -25.55975 -24.55545 -23.57140 -20.59296 -20.43992 -18.69262 -16.38063 -15.94496 -15.67607 -14.89556 -14.53094 -14.34025 -13.99708 -13.37955 -13.24648 -12.97016 -12.73512 -12.63137 -12.07926 -11.88457 -11.55000 -11.42524 -11.22550 -11.18336 -10.96152 -10.80647 -10.77599 -10.54090 -10.39144 -9.96952 -9.35065 -9.11996 -8.35394 -8.28731 -7.83259 -5.99301 -4.01723 3.31868 3.39192 3.43496 3.89730 4.44805 4.54931 4.66428 4.81953 4.99100 5.14885 5.29668 5.35014 5.36891 5.44845 5.50144 5.58970 5.66263 5.71899 5.76110 5.90748 5.93700 5.97062 6.03748 6.15249 6.19727 6.34051 6.35065 6.48367 6.98982 7.03644 7.12691 7.51132 7.73479 7.83105 7.95829 8.08746 8.44372 9.05812 9.62201 11.12237 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056008 B = 0.004574 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.811028 B = 6120.449577 C = 6161.975972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.527 5.527 3 C 0.053 3.947 4 C 0.077 3.923 5 H 0.056 0.944 6 N -0.683 5.683 7 C 0.067 3.933 8 C 0.025 3.975 9 C -0.520 4.520 10 H 0.055 0.945 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.137 4.137 18 C 0.094 3.906 19 C -0.126 4.126 20 C -0.161 4.161 21 H 0.066 0.934 22 H 0.031 0.969 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.338 0.662 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.013 0.987 30 H 0.025 0.975 31 H 0.260 0.740 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 -16.806 0.218 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.252 5.252 3 C -0.075 4.075 4 C -0.034 4.034 5 H 0.073 0.927 6 N -0.315 5.315 7 C -0.062 4.062 8 C -0.013 4.013 9 C -0.559 4.559 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.175 4.175 18 C 0.004 3.996 19 C -0.184 4.184 20 C -0.219 4.219 21 H 0.085 0.915 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.156 0.844 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.229 -16.599 0.812 19.009 hybrid contribution 1.179 0.609 -0.285 1.357 sum -8.050 -15.990 0.527 17.910 Atomic orbital electron populations 1.22561 0.88226 1.01544 1.00599 1.63606 1.07665 1.14904 1.39013 1.23029 0.95919 0.88241 1.00302 1.22585 0.96586 0.89265 0.94934 0.92653 1.60558 1.49509 1.15303 1.06088 1.22210 0.91776 0.96124 0.96044 1.19076 0.96836 0.89687 0.95681 1.21220 1.28486 1.01044 1.05190 0.92687 1.25003 0.96504 0.97649 0.95210 1.69986 1.44993 1.16827 1.21513 0.86532 0.80623 0.79996 0.80827 1.19742 1.21039 1.20967 1.23071 0.99638 0.96582 0.98236 1.21676 0.94368 0.94522 0.89007 1.21745 0.99772 0.96201 1.00709 1.22357 0.98415 1.01516 0.99633 0.91535 0.95004 0.91815 0.92443 0.90590 0.84370 0.92311 0.96582 0.96839 0.95687 0.93061 0.91030 0.90527 0.92673 0.92794 0.92250 0.92220 0.92268 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.29 60.07 0.50 0.70 16 2 N -0.53 -6.72 5.07 -223.91 -1.14 -7.85 16 3 C 0.05 0.78 6.42 -2.30 -0.01 0.77 16 4 C 0.08 1.17 3.38 -65.58 -0.22 0.95 16 5 H 0.06 0.89 7.83 -51.93 -0.41 0.48 16 6 N -0.68 -12.32 6.41 -104.47 -0.67 -12.99 16 7 C 0.07 1.42 5.49 -3.82 -0.02 1.40 16 8 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 9 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 10 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 13 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 C -0.14 -1.71 5.42 -24.91 -0.13 -1.85 16 18 C 0.09 1.07 1.15 -130.61 -0.15 0.92 16 19 C -0.13 -1.32 8.70 37.16 0.32 -0.99 16 20 C -0.16 -1.55 7.16 37.16 0.27 -1.28 16 21 H 0.07 0.62 6.73 -51.93 -0.35 0.27 16 22 H 0.03 0.34 6.44 -51.93 -0.33 0.00 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.90 7.78 -51.93 -0.40 0.49 16 25 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 26 H 0.34 5.87 8.44 -39.29 -0.33 5.54 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.07 0.83 7.83 -51.93 -0.41 0.43 16 33 H 0.08 0.98 7.85 -51.93 -0.41 0.57 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.60 6.64 -51.93 -0.34 0.26 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.54 6.67 -51.93 -0.35 0.20 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -29.90 305.07 -8.60 -38.50 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.10 Total: -0.11 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.01 Total: -12.55 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -1.07 Total: -47.25 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.90 -8.60 -38.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694177453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.734 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds