Wall clock time and date at job start Mon Mar 30 2020 03:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47836 * 111.00391 * 2 1 4 4 C 1.54905 * 104.80025 * 213.63693 * 3 2 1 5 5 H 1.09001 * 111.02452 * 278.96447 * 4 3 2 6 6 N 1.46899 * 110.99047 * 155.16160 * 4 3 2 7 7 C 1.46907 * 111.00018 * 92.73284 * 6 4 3 8 8 C 1.52995 * 109.47006 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.46908 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99823 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00025 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99980 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00197 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46967 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47125 * 120.00067 * 13 11 9 16 16 H 1.48495 * 109.47523 * 240.00571 * 13 11 9 17 17 C 1.55141 * 101.65148 * 37.07000 * 4 3 2 18 18 C 1.47448 * 110.99964 * 239.15902 * 2 1 3 19 19 C 1.53001 * 109.88973 * 242.66758 * 18 2 1 20 20 C 1.53001 * 109.88619 * 3.69129 * 18 2 1 21 21 H 1.09002 * 109.47401 * 180.83948 * 1 2 3 22 22 H 1.09001 * 109.46874 * 60.83961 * 1 2 3 23 23 H 1.09004 * 109.46970 * 300.84094 * 1 2 3 24 24 H 1.09002 * 110.37573 * 332.47383 * 3 2 1 25 25 H 1.09009 * 110.36990 * 94.80497 * 3 2 1 26 26 H 1.00898 * 111.00294 * 216.68719 * 6 4 3 27 27 H 1.08992 * 109.47068 * 300.00133 * 7 6 4 28 28 H 1.09004 * 109.46717 * 59.99856 * 7 6 4 29 29 H 1.08992 * 109.47674 * 300.00200 * 8 7 6 30 30 H 1.09004 * 109.47142 * 60.00555 * 8 7 6 31 31 H 0.96997 * 119.99658 * 179.97438 * 12 11 9 32 32 H 1.09000 * 110.70394 * 205.96331 * 17 4 3 33 33 H 1.09005 * 110.84932 * 82.79848 * 17 4 3 34 34 H 1.09000 * 109.47258 * 61.44881 * 19 18 2 35 35 H 1.08994 * 109.47141 * 181.45401 * 19 18 2 36 36 H 1.09003 * 109.47102 * 301.45274 * 19 18 2 37 37 H 1.09002 * 109.47167 * 58.54458 * 20 18 2 38 38 H 1.08995 * 109.47024 * 178.54559 * 20 18 2 39 39 H 1.08996 * 109.47305 * 298.54395 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3801 0.0000 4 6 3.3048 1.3026 -0.8296 5 1 4.1307 0.9283 -0.2247 6 7 3.6347 2.6089 -1.4149 7 6 4.5344 3.3677 -0.5358 8 6 4.8550 4.7189 -1.1779 9 6 5.7775 5.4975 -0.2757 10 1 6.1027 5.0711 0.6617 11 6 6.2069 6.7538 -0.6475 12 7 5.8112 7.2729 -1.7893 13 14 7.3509 7.7187 0.4704 14 1 7.6460 6.9185 1.6861 15 1 8.6168 8.0099 -0.2492 16 1 6.6998 8.9943 0.8629 17 6 2.9159 0.2821 -1.9315 18 6 1.9974 -0.7057 -1.1819 19 6 2.8007 -1.9308 -0.7406 20 6 0.8435 -1.1390 -2.0883 21 1 -0.3634 -1.0275 0.0151 22 1 -0.3633 0.5007 -0.8974 23 1 -0.3633 0.5269 0.8824 24 1 1.2890 2.0592 -0.4722 25 1 2.2148 1.7037 1.0183 26 1 4.0337 2.5023 -2.3355 27 1 4.0506 3.5286 0.4276 28 1 5.4576 2.8070 -0.3896 29 1 5.3390 4.5577 -2.1411 30 1 3.9319 5.2798 -1.3244 31 1 6.1131 8.1569 -2.0506 32 1 3.8001 -0.2280 -2.3137 33 1 2.3752 0.7725 -2.7411 34 1 2.1489 -2.6173 -0.2002 35 1 3.2094 -2.4325 -1.6177 36 1 3.6160 -1.6155 -0.0895 37 1 0.2715 -0.2624 -2.3925 38 1 1.2428 -1.6369 -2.9719 39 1 0.1941 -1.8265 -1.5463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694177453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:53 Heat of formation + Delta-G solvation = -24.537211 kcal Electronic energy + Delta-G solvation = -16023.081216 eV Core-core repulsion = 13578.166658 eV Total energy + Delta-G solvation = -2444.914558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -40.88781 -37.27837 -35.08322 -33.32664 -32.60927 -29.97569 -28.27079 -26.57908 -26.11386 -24.96570 -22.48256 -21.69417 -19.64446 -18.52141 -17.08272 -16.94670 -16.44828 -16.02584 -15.71327 -15.16697 -14.65815 -14.54993 -14.23360 -14.01960 -13.88244 -13.48028 -13.22995 -12.90938 -12.70284 -12.54305 -12.41047 -12.34571 -12.11068 -12.04512 -11.87908 -11.71940 -11.56785 -11.36356 -11.12769 -10.58085 -9.42338 -9.20260 -8.21544 -6.33062 1.40113 1.40560 1.54041 2.39824 2.85535 3.12103 3.40811 3.59684 3.71395 4.02601 4.20901 4.30058 4.35617 4.50607 4.52652 4.55804 4.60284 4.66748 4.80490 4.86229 4.92074 4.95210 4.97412 5.03288 5.07261 5.08288 5.13122 5.27251 5.43672 5.49390 5.65274 5.76777 6.00583 6.14163 6.19984 6.27076 6.50906 6.84066 7.36446 8.90905 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056008 B = 0.004574 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.811028 B = 6120.449577 C = 6161.975972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.534 5.534 3 C 0.058 3.942 4 C 0.075 3.925 5 H 0.050 0.950 6 N -0.686 5.686 7 C 0.087 3.913 8 C 0.032 3.968 9 C -0.545 4.545 10 H 0.059 0.941 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.967 3.033 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.130 4.130 18 C 0.091 3.909 19 C -0.123 4.123 20 C -0.157 4.157 21 H 0.085 0.915 22 H 0.032 0.968 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.342 0.658 27 H 0.055 0.945 28 H 0.019 0.981 29 H -0.007 1.007 30 H -0.006 1.006 31 H 0.264 0.736 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.786 -18.112 0.719 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.259 5.259 3 C -0.071 4.071 4 C -0.036 4.036 5 H 0.068 0.932 6 N -0.318 5.318 7 C -0.042 4.042 8 C -0.005 4.005 9 C -0.583 4.583 10 H 0.078 0.922 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.168 4.168 18 C 0.001 3.999 19 C -0.181 4.181 20 C -0.214 4.214 21 H 0.103 0.897 22 H 0.050 0.950 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.161 0.839 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.011 0.989 30 H 0.012 0.988 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.196 -17.931 1.314 20.194 hybrid contribution 1.120 0.986 -0.472 1.565 sum -8.075 -16.945 0.842 18.790 Atomic orbital electron populations 1.22626 0.86961 1.02765 1.00636 1.63626 1.08928 1.13347 1.39962 1.22890 0.95426 0.89454 0.99320 1.22620 0.96588 0.88323 0.96033 0.93223 1.60451 1.48369 1.17083 1.05879 1.21806 0.92490 0.94124 0.95813 1.18920 0.94816 0.91896 0.94908 1.21636 1.29098 1.01878 1.05724 0.92244 1.25968 0.98130 0.98777 0.96760 1.70113 1.46257 1.17435 1.23376 0.85366 0.78281 0.78310 0.78881 1.18626 1.20210 1.20297 1.23051 1.00414 0.96052 0.97315 1.21797 0.94936 0.94377 0.88748 1.21729 0.99321 0.95814 1.01247 1.22311 0.97740 1.01588 0.99797 0.89652 0.94967 0.91859 0.93712 0.91724 0.83947 0.92669 0.96313 0.98885 0.98753 0.92705 0.89844 0.90745 0.91970 0.91170 0.93573 0.92834 0.91028 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.29 127.69 1.06 1.42 16 2 N -0.53 -12.87 5.07 -862.33 -4.37 -17.25 16 3 C 0.06 1.68 6.42 86.77 0.56 2.24 16 4 C 0.07 2.24 3.38 46.30 0.16 2.40 16 5 H 0.05 1.57 7.83 -2.39 -0.02 1.55 16 6 N -0.69 -24.96 6.41 -484.44 -3.11 -28.07 16 7 C 0.09 3.76 5.49 86.30 0.47 4.23 16 8 C 0.03 1.74 5.23 29.85 0.16 1.90 16 9 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 10 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 11 C 0.00 0.09 5.46 84.65 0.46 0.56 16 12 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 13 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 14 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 C -0.13 -3.06 5.42 31.77 0.17 -2.89 16 18 C 0.09 1.89 1.15 3.87 0.00 1.89 16 19 C -0.12 -2.27 8.70 71.98 0.63 -1.64 16 20 C -0.16 -2.59 7.16 71.98 0.52 -2.07 16 21 H 0.08 1.37 6.73 -2.39 -0.02 1.35 16 22 H 0.03 0.64 6.44 -2.39 -0.02 0.62 16 23 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.04 1.40 7.78 -2.39 -0.02 1.38 16 25 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.34 11.95 8.44 -89.70 -0.76 11.19 16 27 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.02 0.80 8.09 -2.38 -0.02 0.78 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.08 1.77 7.83 -2.39 -0.02 1.75 16 33 H 0.07 1.80 7.85 -2.38 -0.02 1.78 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 0.96 6.64 -2.39 -0.02 0.94 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.06 6.67 -2.39 -0.02 1.04 16 Total: -1.00 -63.96 305.07 -0.51 -64.47 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.24 Total: 14.62 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 4.42 Total: -23.39 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -7.19 Total: -102.44 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.96 -0.51 -64.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694177453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.936 kcal (2) G-P(sol) polarization free energy of solvation -63.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds