Wall clock time and date at job start Mon Mar 30 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46834 * 2 1 4 4 C 1.52996 * 109.47129 * 240.00396 * 2 1 3 5 5 C 1.50695 * 109.47256 * 174.99847 * 4 2 1 6 6 H 1.08005 * 120.00245 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00100 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99938 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99940 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46967 * 90.00265 * 9 7 5 11 11 H 1.48498 * 109.47412 * 210.00115 * 9 7 5 12 12 H 1.48499 * 109.47415 * 330.00416 * 9 7 5 13 13 O 1.42897 * 109.47370 * 119.99762 * 2 1 3 14 14 C 1.42903 * 114.00023 * 270.00097 * 13 2 1 15 15 C 1.50474 * 109.62774 * 90.38769 * 14 13 2 16 16 C 1.54268 * 112.38918 * 213.74135 * 15 14 13 17 17 C 1.54072 * 112.94522 * 318.57842 * 16 15 14 18 18 C 1.50471 * 112.49702 * 318.16698 * 17 16 15 19 19 C 1.54245 * 108.51963 * 94.15116 * 18 17 16 20 20 C 1.45532 * 112.40824 * 280.01210 * 19 18 17 21 21 H 1.09004 * 109.46854 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47003 * 299.99901 * 1 2 3 23 23 H 1.08999 * 109.47396 * 60.00201 * 1 2 3 24 24 H 1.09001 * 109.46945 * 294.99478 * 4 2 1 25 25 H 1.08999 * 109.47591 * 54.99070 * 4 2 1 26 26 H 0.97004 * 119.99829 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.62705 * 330.00047 * 14 13 2 28 28 H 1.08996 * 108.87961 * 334.83716 * 15 14 13 29 29 H 1.08995 * 108.87705 * 93.27688 * 15 14 13 30 30 H 1.09001 * 108.83427 * 197.61629 * 16 15 14 31 31 H 1.08996 * 108.65089 * 79.41336 * 16 15 14 32 32 H 1.08996 * 108.87148 * 197.39264 * 17 16 15 33 33 H 1.08999 * 108.79473 * 78.89656 * 17 16 15 34 34 H 1.08992 * 109.63290 * 334.44290 * 18 17 16 35 35 H 1.09000 * 109.78743 * 213.95267 * 18 17 16 36 36 H 1.09002 * 108.89218 * 159.25489 * 19 18 17 37 37 H 1.09000 * 108.89510 * 40.77393 * 19 18 17 38 38 H 1.09005 * 108.89581 * 301.18197 * 20 19 18 39 39 H 1.09000 * 108.81888 * 182.63775 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5418 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8384 -3.2990 9 14 6.0920 -1.0609 -2.4370 10 1 6.7009 -2.2129 -1.7246 11 1 6.5291 -1.0693 -3.8561 12 1 6.5260 0.2048 -1.7929 13 8 2.0064 -0.6736 1.1668 14 6 2.2001 0.1831 2.2940 15 6 0.9354 0.2423 3.1072 16 6 0.7214 1.6230 3.7612 17 6 2.0185 2.2219 4.3380 18 6 2.8569 1.1977 5.0538 19 6 3.8962 0.6357 4.0623 20 6 3.3318 -0.3754 3.1808 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.7517 -1.7714 -1.2056 25 1 1.6053 -0.2617 -2.1370 26 1 4.0609 -2.2451 -4.0345 27 1 2.4629 1.1842 1.9523 28 1 0.0884 0.0180 2.4588 29 1 0.9853 -0.5120 3.8923 30 1 -0.0074 1.5223 4.5655 31 1 0.3221 2.3058 3.0113 32 1 1.7593 3.0166 5.0374 33 1 2.6022 2.6475 3.5218 34 1 2.2200 0.3898 5.4137 35 1 3.3688 1.6633 5.8960 36 1 4.7184 0.1940 4.6254 37 1 4.2853 1.4544 3.4569 38 1 2.9360 -1.1906 3.7866 39 1 4.1230 -0.7644 2.5399 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695816660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:08 Heat of formation + Delta-G solvation = -81.600713 kcal Electronic energy + Delta-G solvation = -16613.238259 eV Core-core repulsion = 14133.556491 eV Total energy + Delta-G solvation = -2479.681768 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.20525 -36.64570 -33.20056 -32.38138 -31.50179 -30.02525 -27.32685 -24.52111 -24.03533 -23.00781 -20.56975 -19.84857 -19.25361 -16.38909 -16.20880 -15.13075 -14.94653 -14.51463 -14.28610 -13.93570 -13.40782 -13.17915 -12.66474 -12.44183 -12.16422 -11.89969 -11.76944 -11.40763 -11.27550 -10.95488 -10.86160 -10.63859 -10.58035 -10.43313 -10.34319 -10.13306 -10.04678 -9.75149 -9.26435 -9.08101 -8.52657 -8.29296 -5.92202 -3.91991 3.37106 3.42729 3.45955 4.35162 4.52833 4.74697 4.91572 5.01140 5.28248 5.33487 5.34558 5.44435 5.47428 5.61046 5.71614 5.81630 5.85817 5.96917 6.03540 6.04949 6.13111 6.19435 6.21277 6.27562 6.32524 6.38785 6.49114 6.52412 6.62945 6.69158 6.81376 7.01695 7.62368 7.73963 8.05966 8.31698 8.51979 9.12206 9.69910 11.19655 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029591 B = 0.007534 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.001839 B = 3715.474720 C = 4416.585553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.093 3.907 3 H 0.045 0.955 4 C 0.023 3.977 5 C -0.504 4.504 6 H 0.055 0.945 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 O -0.362 6.362 14 C 0.094 3.906 15 C -0.148 4.148 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.118 4.118 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.025 0.975 25 H 0.028 0.972 26 H 0.259 0.741 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 6.663 14.553 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.036 3.964 3 H 0.063 0.937 4 C -0.014 4.014 5 C -0.542 4.542 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 O -0.281 6.281 14 C 0.036 3.964 15 C -0.186 4.186 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.152 4.152 20 C -0.155 4.155 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.811 6.370 14.387 16.189 hybrid contribution 0.910 0.258 -0.141 0.956 sum -2.901 6.628 14.247 15.979 Atomic orbital electron populations 1.22499 0.98445 1.01825 1.00555 1.22422 0.90867 0.95823 0.87310 0.93742 1.19251 0.96241 0.96346 0.89586 1.21144 0.91957 1.33724 1.07418 0.92714 1.24992 0.98207 0.95563 0.95845 1.69959 1.35340 1.36400 1.12249 0.86619 0.86139 0.78404 0.76983 1.20724 1.21351 1.19993 1.88015 1.86226 1.34544 1.19283 1.21681 0.93404 0.93852 0.87474 1.22179 0.99734 0.96736 0.99925 1.21892 0.97084 0.96697 0.99479 1.21362 0.96658 0.98056 0.99752 1.21361 0.97611 0.98882 0.97707 1.20450 0.97993 0.99285 0.97430 1.20488 0.98842 0.98514 0.97680 0.92458 0.93574 0.92445 0.95699 0.95350 0.93131 0.92690 0.90762 0.92117 0.92563 0.92511 0.92659 0.91989 0.91658 0.92322 0.92181 0.92113 0.92114 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.98 37.16 0.33 -2.83 16 2 C 0.09 2.02 2.66 -26.73 -0.07 1.95 16 3 H 0.04 0.95 7.37 -51.93 -0.38 0.57 16 4 C 0.02 0.60 4.68 -27.89 -0.13 0.47 16 5 C -0.50 -14.64 8.88 -34.44 -0.31 -14.94 16 6 H 0.05 1.57 7.74 -52.48 -0.41 1.16 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 9 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 O -0.36 -7.78 9.37 -35.23 -0.33 -8.11 16 14 C 0.09 1.60 2.27 -27.34 -0.06 1.53 16 15 C -0.15 -2.10 4.93 -27.33 -0.13 -2.23 16 16 C -0.11 -1.33 5.85 -25.51 -0.15 -1.48 16 17 C -0.12 -1.32 5.32 -27.43 -0.15 -1.47 16 18 C -0.12 -1.28 5.61 -27.34 -0.15 -1.43 16 19 C -0.11 -1.43 5.26 -29.60 -0.16 -1.58 16 20 C -0.12 -1.81 4.94 -29.60 -0.15 -1.96 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.05 0.72 5.89 -51.93 -0.31 0.41 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.06 0.95 6.21 -51.93 -0.32 0.62 16 28 H 0.07 1.11 5.16 -51.93 -0.27 0.84 16 29 H 0.06 0.82 6.65 -51.93 -0.35 0.48 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.73 6.63 -51.93 -0.34 0.38 16 34 H 0.06 0.71 6.99 -51.93 -0.36 0.34 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.78 7.47 -51.93 -0.39 0.39 16 38 H 0.06 0.89 7.48 -51.93 -0.39 0.50 16 39 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 LS Contribution 295.66 15.07 4.46 4.46 Total: -1.00 -30.58 295.66 -8.25 -38.83 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.88 Total: -3.08 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -1.22 Total: -22.47 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.74 Total: -26.85 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.33 Total: -8.11 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.58 -8.25 -38.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.770 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds