Wall clock time and date at job start Mon Mar 30 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46834 * 2 1 4 4 C 1.52996 * 109.47129 * 240.00396 * 2 1 3 5 5 C 1.50695 * 109.47256 * 174.99847 * 4 2 1 6 6 H 1.08005 * 120.00245 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00100 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99938 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99940 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46967 * 90.00265 * 9 7 5 11 11 H 1.48498 * 109.47412 * 210.00115 * 9 7 5 12 12 H 1.48499 * 109.47415 * 330.00416 * 9 7 5 13 13 O 1.42897 * 109.47370 * 119.99762 * 2 1 3 14 14 C 1.42903 * 114.00023 * 270.00097 * 13 2 1 15 15 C 1.50474 * 109.62774 * 90.38769 * 14 13 2 16 16 C 1.54268 * 112.38918 * 213.74135 * 15 14 13 17 17 C 1.54072 * 112.94522 * 318.57842 * 16 15 14 18 18 C 1.50471 * 112.49702 * 318.16698 * 17 16 15 19 19 C 1.54245 * 108.51963 * 94.15116 * 18 17 16 20 20 C 1.45532 * 112.40824 * 280.01210 * 19 18 17 21 21 H 1.09004 * 109.46854 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47003 * 299.99901 * 1 2 3 23 23 H 1.08999 * 109.47396 * 60.00201 * 1 2 3 24 24 H 1.09001 * 109.46945 * 294.99478 * 4 2 1 25 25 H 1.08999 * 109.47591 * 54.99070 * 4 2 1 26 26 H 0.97004 * 119.99829 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.62705 * 330.00047 * 14 13 2 28 28 H 1.08996 * 108.87961 * 334.83716 * 15 14 13 29 29 H 1.08995 * 108.87705 * 93.27688 * 15 14 13 30 30 H 1.09001 * 108.83427 * 197.61629 * 16 15 14 31 31 H 1.08996 * 108.65089 * 79.41336 * 16 15 14 32 32 H 1.08996 * 108.87148 * 197.39264 * 17 16 15 33 33 H 1.08999 * 108.79473 * 78.89656 * 17 16 15 34 34 H 1.08992 * 109.63290 * 334.44290 * 18 17 16 35 35 H 1.09000 * 109.78743 * 213.95267 * 18 17 16 36 36 H 1.09002 * 108.89218 * 159.25489 * 19 18 17 37 37 H 1.09000 * 108.89510 * 40.77393 * 19 18 17 38 38 H 1.09005 * 108.89581 * 301.18197 * 20 19 18 39 39 H 1.09000 * 108.81888 * 182.63775 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5418 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8384 -3.2990 9 14 6.0920 -1.0609 -2.4370 10 1 6.7009 -2.2129 -1.7246 11 1 6.5291 -1.0693 -3.8561 12 1 6.5260 0.2048 -1.7929 13 8 2.0064 -0.6736 1.1668 14 6 2.2001 0.1831 2.2940 15 6 0.9354 0.2423 3.1072 16 6 0.7214 1.6230 3.7612 17 6 2.0185 2.2219 4.3380 18 6 2.8569 1.1977 5.0538 19 6 3.8962 0.6357 4.0623 20 6 3.3318 -0.3754 3.1808 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.7517 -1.7714 -1.2056 25 1 1.6053 -0.2617 -2.1370 26 1 4.0609 -2.2451 -4.0345 27 1 2.4629 1.1842 1.9523 28 1 0.0884 0.0180 2.4588 29 1 0.9853 -0.5120 3.8923 30 1 -0.0074 1.5223 4.5655 31 1 0.3221 2.3058 3.0113 32 1 1.7593 3.0166 5.0374 33 1 2.6022 2.6475 3.5218 34 1 2.2200 0.3898 5.4137 35 1 3.3688 1.6633 5.8960 36 1 4.7184 0.1940 4.6254 37 1 4.2853 1.4544 3.4569 38 1 2.9360 -1.1906 3.7866 39 1 4.1230 -0.7644 2.5399 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695816660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:07 Heat of formation + Delta-G solvation = -98.679490 kcal Electronic energy + Delta-G solvation = -16613.978850 eV Core-core repulsion = 14133.556491 eV Total energy + Delta-G solvation = -2480.422360 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.47959 -38.06405 -35.24192 -33.52366 -33.11334 -31.36130 -29.30955 -25.65437 -25.22564 -24.89967 -22.04883 -21.32059 -20.28745 -18.51084 -17.73460 -16.73523 -16.25493 -16.12975 -15.34796 -15.30022 -14.78997 -14.49761 -14.08394 -13.91918 -13.69029 -13.37268 -13.29420 -13.13122 -12.69747 -12.64157 -12.53049 -12.26825 -12.05091 -11.63368 -11.54981 -11.33112 -11.29787 -11.17464 -11.06997 -10.88049 -10.57395 -10.14409 -8.18665 -6.27139 1.37251 1.39424 1.49901 2.41012 2.90634 3.16161 3.73604 3.83142 4.08766 4.18047 4.25285 4.30206 4.30976 4.43337 4.46704 4.51058 4.55168 4.59943 4.78192 4.92598 5.02824 5.07313 5.08233 5.18875 5.23286 5.25664 5.33092 5.37670 5.38654 5.43724 5.48610 5.50398 5.56492 5.59316 5.80679 6.25043 6.72147 6.85909 7.39618 8.93595 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029591 B = 0.007534 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.001839 B = 3715.474720 C = 4416.585553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 H 0.045 0.955 4 C 0.025 3.975 5 C -0.524 4.524 6 H 0.052 0.948 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.264 1.264 13 O -0.391 6.391 14 C 0.088 3.912 15 C -0.143 4.143 16 C -0.110 4.110 17 C -0.122 4.122 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.113 4.113 21 H 0.050 0.950 22 H 0.075 0.925 23 H 0.065 0.935 24 H -0.009 1.009 25 H 0.011 0.989 26 H 0.263 0.737 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.609 7.891 16.524 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.063 0.937 4 C -0.012 4.012 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.188 1.188 13 O -0.311 6.311 14 C 0.030 3.970 15 C -0.180 4.180 16 C -0.148 4.148 17 C -0.159 4.159 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.151 4.151 21 H 0.069 0.931 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.010 0.990 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.553 7.610 16.374 18.402 hybrid contribution 0.826 -0.155 -0.746 1.124 sum -2.727 7.455 15.628 17.528 Atomic orbital electron populations 1.22381 0.95429 1.02049 1.02431 1.22135 0.93139 0.94613 0.85696 0.93709 1.19142 0.95504 0.94751 0.91822 1.21481 0.93317 1.33868 1.07513 0.92938 1.25918 1.03603 0.95005 0.95349 1.70085 1.37500 1.37120 1.12887 0.85508 0.79637 0.78848 0.77440 1.20133 1.20384 1.18804 1.87951 1.86708 1.36189 1.20268 1.21950 0.95580 0.92878 0.86565 1.22082 0.97546 0.98855 0.99560 1.21885 0.98072 0.94880 0.99973 1.21385 0.96104 0.98602 0.99843 1.21340 0.97116 0.98953 0.97593 1.20441 0.98938 0.98306 0.97439 1.20508 0.97472 0.99655 0.97450 0.93063 0.90670 0.91569 0.99024 0.97059 0.92824 0.93239 0.91519 0.91460 0.90551 0.92480 0.90534 0.93204 0.91347 0.90255 0.90873 0.92766 0.91478 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.88 8.98 71.98 0.65 -5.23 16 2 C 0.10 4.48 2.66 30.59 0.08 4.56 16 3 H 0.04 1.94 7.37 -2.38 -0.02 1.92 16 4 C 0.02 1.38 4.68 29.85 0.14 1.52 16 5 C -0.52 -31.23 8.88 25.60 0.23 -31.01 16 6 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.93 -58.62 13.29 21.45 0.28 -58.33 16 9 Si 0.96 46.03 29.54 68.60 2.03 48.05 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 13 O -0.39 -17.13 9.37 -148.98 -1.40 -18.52 16 14 C 0.09 2.94 2.27 30.20 0.07 3.01 16 15 C -0.14 -3.79 4.93 30.21 0.15 -3.64 16 16 C -0.11 -2.25 5.85 31.39 0.18 -2.07 16 17 C -0.12 -2.30 5.32 30.14 0.16 -2.14 16 18 C -0.11 -2.08 5.61 30.20 0.17 -1.92 16 19 C -0.11 -2.67 5.26 28.74 0.15 -2.52 16 20 C -0.11 -3.45 4.94 28.73 0.14 -3.30 16 21 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.07 2.22 5.89 -2.39 -0.01 2.20 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.05 1.69 6.21 -2.39 -0.01 1.68 16 28 H 0.07 1.87 5.16 -2.39 -0.01 1.86 16 29 H 0.07 1.68 6.65 -2.39 -0.02 1.67 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.07 6.63 -2.39 -0.02 1.05 16 34 H 0.07 1.25 6.99 -2.39 -0.02 1.23 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.34 7.47 -2.39 -0.02 1.32 16 38 H 0.07 1.91 7.48 -2.38 -0.02 1.90 16 39 H 0.04 1.55 8.13 -2.39 -0.02 1.54 16 Total: -1.00 -66.95 295.66 4.49 -62.46 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.99 Total: 8.72 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 2.58 Total: -42.38 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.28 Total: -58.33 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -1.40 Total: -18.52 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -66.95 4.49 -62.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.218 kcal (2) G-P(sol) polarization free energy of solvation -66.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds