Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46756 * 2 1 4 4 C 1.52995 * 109.47118 * 120.00097 * 2 1 3 5 5 C 1.50697 * 109.47169 * 184.99951 * 4 2 1 6 6 H 1.08000 * 120.00118 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00166 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00074 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99918 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47161 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46735 * 120.00290 * 9 7 5 12 12 H 1.48503 * 109.46925 * 239.99739 * 9 7 5 13 13 O 1.42899 * 109.46617 * 239.99987 * 2 1 3 14 14 C 1.42906 * 113.99897 * 87.73419 * 13 2 1 15 15 C 1.54244 * 108.89017 * 238.95125 * 14 13 2 16 16 C 1.50476 * 108.52323 * 159.26307 * 15 14 13 17 17 C 1.54073 * 112.49998 * 94.14696 * 16 15 14 18 18 C 1.54064 * 112.81476 * 318.28677 * 17 16 15 19 19 C 1.50475 * 112.49522 * 318.28030 * 18 17 16 20 20 C 1.45536 * 108.89692 * 116.06683 * 14 13 2 21 21 H 1.08998 * 109.47215 * 184.20130 * 1 2 3 22 22 H 1.09002 * 109.47277 * 304.20025 * 1 2 3 23 23 H 1.08999 * 109.47515 * 64.19411 * 1 2 3 24 24 H 1.09000 * 109.47021 * 64.99537 * 4 2 1 25 25 H 1.09003 * 109.46935 * 304.99916 * 4 2 1 26 26 H 0.97007 * 120.00429 * 180.02562 * 8 7 5 27 27 H 1.09000 * 108.87408 * 357.45679 * 14 13 2 28 28 H 1.09004 * 109.62836 * 278.97077 * 15 14 13 29 29 H 1.08996 * 109.63027 * 39.55442 * 15 14 13 30 30 H 1.08995 * 108.87646 * 333.37357 * 16 15 14 31 31 H 1.08999 * 108.87862 * 214.92561 * 16 15 14 32 32 H 1.08996 * 108.81418 * 197.42223 * 17 16 15 33 33 H 1.08996 * 108.72370 * 79.08478 * 17 16 15 34 34 H 1.09006 * 108.87456 * 197.50847 * 18 17 16 35 35 H 1.08994 * 108.80067 * 79.00649 * 18 17 16 36 36 H 1.09001 * 109.63247 * 334.44565 * 19 18 17 37 37 H 1.09006 * 109.62707 * 213.86321 * 19 18 17 38 38 H 1.09001 * 108.89668 * 303.44006 * 20 14 13 39 39 H 1.08997 * 108.89828 * 62.03031 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2304 -1.1936 2.3577 8 7 3.5765 -1.8387 3.2988 9 14 6.0922 -1.0623 2.4359 10 1 6.5838 -0.2929 1.2649 11 1 6.4872 -0.3669 3.6872 12 1 6.6855 -2.4236 2.4178 13 8 2.0062 -0.6737 -1.1668 14 6 2.1512 0.1735 -2.3085 15 6 1.2646 -0.3685 -3.4484 16 6 1.0116 0.7452 -4.4281 17 6 2.0174 0.7436 -5.5952 18 6 3.4611 0.4582 -5.1393 19 6 3.8159 1.1783 -3.8666 20 6 3.5577 0.2293 -2.6784 21 1 -0.3633 -1.0249 0.0753 22 1 -0.3634 0.5776 0.8500 23 1 -0.3634 0.4473 -0.9251 24 1 1.7516 -1.7715 1.2055 25 1 1.6054 -0.2617 2.1369 26 1 4.0609 -2.2455 4.0343 27 1 1.8146 1.1769 -2.0481 28 1 1.7759 -1.1894 -3.9513 29 1 0.3168 -0.7192 -3.0399 30 1 1.0811 1.6984 -3.9040 31 1 0.0042 0.6389 -4.8305 32 1 1.9892 1.7170 -6.0849 33 1 1.7183 -0.0195 -6.3138 34 1 4.1477 0.7724 -5.9255 35 1 3.5739 -0.6142 -4.9810 36 1 3.1963 2.0693 -3.7650 37 1 4.8684 1.4612 -3.8872 38 1 4.1351 0.5730 -1.8202 39 1 3.8914 -0.7723 -2.9496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695816662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -83.470781 kcal Electronic energy + Delta-G solvation = -16551.430580 eV Core-core repulsion = 14071.667720 eV Total energy + Delta-G solvation = -2479.762860 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.22797 -36.65084 -33.25641 -32.06411 -31.66553 -29.96538 -27.31500 -24.60423 -24.09002 -22.97760 -20.40118 -19.98213 -19.17239 -16.45009 -16.20330 -15.47393 -14.75269 -14.51909 -14.33752 -13.61793 -13.31828 -13.01775 -12.87370 -12.36699 -12.00326 -11.98073 -11.75778 -11.39882 -11.30539 -11.05238 -10.88657 -10.63670 -10.52390 -10.42382 -10.32846 -10.26213 -9.94918 -9.91231 -9.24320 -9.09541 -8.51428 -8.29663 -5.92365 -3.92031 3.35724 3.42930 3.47412 4.33052 4.52806 4.80541 4.87744 5.02195 5.24465 5.36312 5.39830 5.44529 5.53039 5.55753 5.76143 5.81503 5.85357 5.97855 5.98330 6.05497 6.16026 6.18025 6.23701 6.27153 6.29650 6.39481 6.50494 6.51366 6.62683 6.77754 6.81755 7.02076 7.61999 7.74091 8.06090 8.30603 8.51875 9.12400 9.69943 11.19528 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030219 B = 0.007377 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.333255 B = 3794.420678 C = 4551.706717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.092 3.908 3 H 0.044 0.956 4 C 0.023 3.977 5 C -0.502 4.502 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 O -0.364 6.364 14 C 0.095 3.905 15 C -0.125 4.125 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.113 4.113 20 C -0.133 4.133 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.040 0.960 24 H 0.025 0.975 25 H 0.028 0.972 26 H 0.258 0.742 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.636 5.954 -15.084 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.035 3.965 3 H 0.062 0.938 4 C -0.014 4.014 5 C -0.541 4.541 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 O -0.284 6.284 14 C 0.037 3.963 15 C -0.163 4.163 16 C -0.154 4.154 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.151 4.151 20 C -0.171 4.171 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.566 5.661 -14.927 16.358 hybrid contribution 0.954 0.246 0.161 0.998 sum -2.613 5.907 -14.765 16.116 Atomic orbital electron populations 1.22385 0.98435 1.01877 1.00304 1.22463 0.90828 0.95758 0.87450 0.93791 1.19241 0.96285 0.96323 0.89528 1.21185 0.91928 1.33614 1.07361 0.92603 1.24995 0.98201 0.95569 0.95883 1.69970 1.35253 1.36473 1.12268 0.86569 0.86173 0.77727 0.77746 1.19796 1.21179 1.21095 1.88063 1.86519 1.35400 1.18378 1.20878 0.94589 0.93572 0.87251 1.21653 1.00325 0.98320 0.95961 1.21294 0.98403 0.99279 0.96462 1.21909 0.94721 1.01041 0.97585 1.21372 0.95832 1.01152 0.97370 1.21261 1.00947 0.98491 0.94402 1.20827 0.97443 1.00303 0.98485 0.92445 0.92497 0.94044 0.95679 0.95347 0.93193 0.93367 0.91399 0.91448 0.92246 0.92451 0.92652 0.92550 0.92725 0.91841 0.91923 0.91924 0.91141 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.50 37.16 0.35 -2.76 16 2 C 0.09 2.00 2.51 -26.73 -0.07 1.93 16 3 H 0.04 0.94 7.51 -51.93 -0.39 0.55 16 4 C 0.02 0.62 4.68 -27.89 -0.13 0.48 16 5 C -0.50 -14.54 8.88 -34.44 -0.31 -14.84 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 9 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 O -0.36 -7.81 9.28 -35.23 -0.33 -8.13 16 14 C 0.10 1.60 2.10 -29.60 -0.06 1.54 16 15 C -0.12 -1.76 5.25 -27.34 -0.14 -1.90 16 16 C -0.12 -1.33 5.31 -27.43 -0.15 -1.48 16 17 C -0.11 -1.18 5.85 -25.62 -0.15 -1.33 16 18 C -0.12 -1.33 5.32 -27.44 -0.15 -1.48 16 19 C -0.11 -1.43 5.61 -27.34 -0.15 -1.58 16 20 C -0.13 -2.15 4.82 -29.60 -0.14 -2.29 16 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 24 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.05 0.79 6.58 -51.93 -0.34 0.45 16 28 H 0.07 0.96 6.97 -51.93 -0.36 0.60 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.68 6.63 -51.93 -0.34 0.34 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.75 6.62 -51.93 -0.34 0.41 16 36 H 0.06 0.75 6.98 -51.93 -0.36 0.39 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.14 7.46 -51.93 -0.39 0.75 16 LS Contribution 301.19 15.07 4.54 4.54 Total: -1.00 -30.53 301.19 -8.41 -38.94 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -7.14 Total: -3.49 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -1.19 Total: -22.22 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.74 Total: -26.84 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.33 Total: -8.13 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.53 -8.41 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.536 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds