Wall clock time and date at job start Mon Mar 30 2020 02:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47159 * 2 1 4 4 C 1.53001 * 109.46730 * 119.99289 * 2 1 3 5 5 C 1.50700 * 109.47015 * 185.00159 * 4 2 1 6 6 H 1.07996 * 120.00293 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99955 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99840 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00139 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46828 * 59.99808 * 9 7 5 11 11 H 1.48492 * 109.47356 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46905 * 300.00210 * 9 7 5 13 13 O 1.42891 * 109.47098 * 239.98936 * 2 1 3 14 14 C 1.42906 * 113.99643 * 90.00775 * 13 2 1 15 15 H 1.09001 * 109.47232 * 329.99040 * 14 13 2 16 16 C 1.52997 * 109.47321 * 89.99695 * 14 13 2 17 17 C 1.53002 * 109.46817 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.46972 * 299.99733 * 17 16 14 19 19 C 1.52997 * 109.47131 * 60.00459 * 18 17 16 20 20 H 1.08993 * 109.47194 * 60.00154 * 19 18 17 21 21 C 1.53006 * 109.46943 * 179.97438 * 19 18 17 22 22 C 1.52999 * 109.46991 * 299.99311 * 19 18 17 23 23 H 1.08993 * 109.47177 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47481 * 300.00912 * 1 2 3 25 25 H 1.09000 * 109.46781 * 60.00671 * 1 2 3 26 26 H 1.09005 * 109.47225 * 305.00311 * 4 2 1 27 27 H 1.09007 * 109.47256 * 65.00011 * 4 2 1 28 28 H 0.97004 * 120.00109 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47153 * 299.99798 * 16 14 13 30 30 H 1.08996 * 109.46952 * 59.99969 * 16 14 13 31 31 H 1.08996 * 109.47407 * 60.00219 * 17 16 14 32 32 H 1.09000 * 109.46986 * 179.97438 * 17 16 14 33 33 H 1.09001 * 109.46993 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.47380 * 299.99696 * 18 17 16 35 35 H 1.09000 * 109.46866 * 179.97438 * 21 19 18 36 36 H 1.09001 * 109.47372 * 300.00248 * 21 19 18 37 37 H 1.09004 * 109.47107 * 59.99949 * 21 19 18 38 38 H 1.08993 * 109.47839 * 300.00447 * 22 19 18 39 39 H 1.09000 * 109.47160 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.6148 1.3129 6 1 4.0790 -0.0854 0.5398 7 6 4.2303 -1.1924 2.3587 8 7 3.5762 -1.8365 3.3004 9 14 6.0920 -1.0612 2.4371 10 1 6.4853 0.3696 2.4954 11 1 6.5868 -1.7599 3.6504 12 1 6.6837 -1.6884 1.2281 13 8 2.0064 -0.6738 -1.1666 14 6 2.2003 0.1827 -2.2940 15 1 1.4940 1.0116 -2.2463 16 6 3.6294 0.7287 -2.2799 17 6 3.8367 1.6462 -3.4866 18 6 3.6061 0.8541 -4.7751 19 6 2.1770 0.3080 -4.7892 20 1 1.4708 1.1368 -4.7410 21 6 1.9462 -0.4837 -6.0780 22 6 1.9697 -0.6095 -3.5825 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5137 -0.8901 26 1 1.6053 -0.2615 2.1371 27 1 1.7516 -1.7714 1.2058 28 1 4.0605 -2.2433 4.0359 29 1 3.7935 1.2935 -1.3621 30 1 4.3355 -0.1002 -2.3276 31 1 3.1305 2.4751 -3.4384 32 1 4.8547 2.0356 -3.4763 33 1 3.7542 1.5076 -5.6348 34 1 4.3123 0.0252 -4.8233 35 1 0.9282 -0.8731 -6.0878 36 1 2.0939 0.1702 -6.9375 37 1 2.6524 -1.3126 -6.1266 38 1 2.6758 -1.4384 -3.6307 39 1 0.9517 -0.9990 -3.5928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695820489.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:58 Heat of formation + Delta-G solvation = -92.170270 kcal Electronic energy + Delta-G solvation = -16459.329216 eV Core-core repulsion = 13979.189117 eV Total energy + Delta-G solvation = -2480.140099 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.02051 -36.68689 -33.17392 -32.16491 -31.25665 -29.03057 -27.31758 -26.25823 -23.17631 -22.12306 -21.12653 -19.96419 -19.46047 -16.30971 -16.03047 -15.07088 -14.78049 -14.33673 -14.21755 -13.88157 -13.06547 -13.04899 -12.84083 -12.28432 -12.11266 -11.83663 -11.68549 -11.58702 -11.28471 -11.24200 -10.88427 -10.77428 -10.66850 -10.60144 -10.39785 -10.18520 -9.98268 -9.85154 -9.19817 -9.10231 -8.47849 -8.28001 -5.91358 -3.90970 3.38451 3.42416 3.45426 4.33825 4.53353 4.78645 4.91616 5.09010 5.29231 5.38291 5.45936 5.49994 5.60092 5.69517 5.71399 5.77460 5.82696 5.85132 5.90791 6.04174 6.05099 6.11359 6.13894 6.23575 6.32592 6.42579 6.44772 6.47870 6.64366 6.74351 6.82678 7.01959 7.62428 7.74129 8.06986 8.30526 8.52625 9.13035 9.70761 11.20533 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.007349 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.298023 B = 3809.198154 C = 4441.801685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.091 3.909 3 H 0.045 0.955 4 C 0.024 3.976 5 C -0.504 4.504 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 O -0.362 6.362 14 C 0.092 3.908 15 H 0.047 0.953 16 C -0.141 4.141 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.089 4.089 20 H 0.067 0.933 21 C -0.145 4.145 22 C -0.110 4.110 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.259 0.741 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 5.653 -15.164 16.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.063 0.937 4 C -0.013 4.013 5 C -0.542 4.542 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 O -0.281 6.281 14 C 0.034 3.966 15 H 0.065 0.935 16 C -0.179 4.179 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.108 4.108 20 H 0.085 0.915 21 C -0.203 4.203 22 C -0.147 4.147 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.957 5.350 -14.998 16.196 hybrid contribution 0.993 0.296 0.198 1.055 sum -1.964 5.647 -14.799 15.961 Atomic orbital electron populations 1.22347 0.98399 1.01810 1.00370 1.22388 0.90755 0.96054 0.87395 0.93698 1.19234 0.96274 0.96301 0.89492 1.21129 0.91915 1.33780 1.07391 0.92574 1.24987 0.98134 0.95588 0.95873 1.69950 1.35423 1.36411 1.12214 0.86695 0.86177 0.78067 0.77289 1.20406 1.21399 1.20283 1.88034 1.86295 1.34345 1.19404 1.21909 0.95012 0.92522 0.87198 0.93506 1.22053 0.98275 0.99696 0.97853 1.21508 1.01195 0.98086 0.94674 1.21616 0.96514 0.99675 0.97382 1.21091 0.97131 0.97968 0.94587 0.91478 1.21814 1.01588 1.00068 0.96787 1.21627 1.02126 0.98463 0.92510 0.92424 0.92315 0.94214 0.95386 0.95722 0.93099 0.91335 0.91142 0.92400 0.92097 0.92423 0.91867 0.92763 0.92940 0.92637 0.91224 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.52 37.16 0.35 -2.76 16 2 C 0.09 1.99 2.45 -26.73 -0.07 1.92 16 3 H 0.04 0.96 7.62 -51.93 -0.40 0.56 16 4 C 0.02 0.64 4.68 -27.88 -0.13 0.50 16 5 C -0.50 -14.53 8.88 -34.44 -0.31 -14.84 16 6 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 9 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 O -0.36 -7.79 9.39 -35.23 -0.33 -8.12 16 14 C 0.09 1.57 2.40 -26.73 -0.06 1.50 16 15 H 0.05 0.76 7.62 -51.93 -0.40 0.36 16 16 C -0.14 -2.34 5.53 -26.73 -0.15 -2.49 16 17 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 18 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 19 C -0.09 -1.03 2.72 -90.62 -0.25 -1.28 16 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 21 C -0.15 -1.43 9.19 37.16 0.34 -1.09 16 22 C -0.11 -1.58 4.86 -26.73 -0.13 -1.71 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.63 7.96 -51.93 -0.41 0.21 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.07 1.25 7.84 -51.93 -0.41 0.84 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 309.46 15.07 4.66 4.66 Total: -1.00 -30.48 309.46 -8.23 -38.71 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -7.49 Total: -3.79 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -0.79 Total: -21.85 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.74 Total: -26.84 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.33 Total: -8.12 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.48 -8.23 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695820489.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.459 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds