Wall clock time and date at job start Mon Mar 30 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47466 * 2 1 4 4 C 1.53005 * 109.47174 * 239.99783 * 2 1 3 5 5 C 1.50693 * 109.47204 * 175.00289 * 4 2 1 6 6 H 1.07999 * 120.00386 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00063 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99780 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00114 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47018 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46944 * 119.99906 * 9 7 5 12 12 H 1.48494 * 109.46822 * 239.99552 * 9 7 5 13 13 O 1.42905 * 109.47307 * 120.00030 * 2 1 3 14 14 C 1.42899 * 113.99778 * 269.99994 * 13 2 1 15 15 C 1.52999 * 109.46889 * 179.97438 * 14 13 2 16 16 H 1.08993 * 109.47646 * 305.00069 * 15 14 13 17 17 C 1.53003 * 109.47064 * 65.00303 * 15 14 13 18 18 C 1.52999 * 109.47315 * 184.99552 * 15 14 13 19 19 C 1.53780 * 113.61792 * 159.13317 * 18 15 14 20 20 C 1.53949 * 87.02118 * 220.05282 * 19 18 15 21 21 C 1.53781 * 87.11238 * 25.36480 * 20 19 18 22 22 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46785 * 299.99977 * 1 2 3 24 24 H 1.09002 * 109.47171 * 59.99957 * 1 2 3 25 25 H 1.09004 * 109.46988 * 295.00046 * 4 2 1 26 26 H 1.09000 * 109.46765 * 54.99835 * 4 2 1 27 27 H 0.96994 * 120.00246 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47171 * 299.99768 * 14 13 2 29 29 H 1.08997 * 109.47442 * 59.99964 * 14 13 2 30 30 H 1.08998 * 109.47633 * 59.99874 * 17 15 14 31 31 H 1.08999 * 109.47201 * 179.97438 * 17 15 14 32 32 H 1.09004 * 109.46694 * 299.99692 * 17 15 14 33 33 H 1.08996 * 112.85413 * 290.34114 * 18 15 14 34 34 H 1.09004 * 113.61476 * 334.57896 * 19 18 15 35 35 H 1.09003 * 113.60946 * 105.47160 * 19 18 15 36 36 H 1.09003 * 113.54021 * 270.80703 * 20 19 18 37 37 H 1.09008 * 113.73862 * 139.94465 * 20 19 18 38 38 H 1.08996 * 113.61254 * 220.08509 * 21 20 19 39 39 H 1.08997 * 113.61255 * 89.18988 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5396 7 6 4.2303 -1.1928 -2.3583 8 7 3.5763 -1.8371 -3.3000 9 14 6.0920 -1.0605 -2.4374 10 1 6.5836 -0.2902 -1.2669 11 1 6.6861 -2.4214 -2.4200 12 1 6.4860 -0.3644 -3.6884 13 8 2.0064 -0.6737 1.1668 14 6 2.2001 0.1829 2.2941 15 6 2.7080 -0.6408 3.4792 16 1 2.0193 -1.4634 3.6717 17 6 4.0939 -1.2015 3.1539 18 6 2.7969 0.2509 4.7193 19 6 2.7965 -0.5325 6.0426 20 6 1.8839 0.5731 6.6039 21 6 1.4435 0.8375 5.1544 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.7516 -1.7716 -1.2055 26 1 1.6053 -0.2618 -2.1369 27 1 4.0606 -2.2439 -4.0354 28 1 2.9320 0.9513 2.0450 29 1 1.2539 0.6547 2.5589 30 1 4.7827 -0.3789 2.9615 31 1 4.4559 -1.7879 3.9984 32 1 4.0306 -1.8367 2.2704 33 1 3.5925 0.9927 4.6512 34 1 2.3113 -1.5061 5.9736 35 1 3.7740 -0.5788 6.5228 36 1 2.4305 1.4027 7.0525 37 1 1.0833 0.1992 7.2422 38 1 1.3301 1.8956 4.9187 39 1 0.5876 0.2392 4.8422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695860215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:18 Heat of formation + Delta-G solvation = -60.315962 kcal Electronic energy + Delta-G solvation = -16127.193804 eV Core-core repulsion = 13648.435012 eV Total energy + Delta-G solvation = -2478.758792 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.28651 -37.37822 -33.77078 -32.56130 -30.73691 -27.32777 -26.55406 -25.26235 -24.64584 -22.98986 -20.42415 -20.03380 -19.31773 -16.24764 -16.03926 -15.54799 -14.96702 -14.74585 -14.35458 -13.82134 -13.03109 -12.83591 -12.50645 -12.42632 -12.05174 -11.87076 -11.69953 -11.65090 -11.39099 -11.25663 -10.95692 -10.68341 -10.59284 -10.54270 -10.36445 -10.15800 -9.90744 -9.80160 -9.32302 -9.06354 -8.49933 -8.29538 -5.92270 -3.91917 3.35849 3.43064 3.47745 4.32278 4.53009 4.61955 4.66629 4.78271 4.94537 5.29353 5.44209 5.49547 5.60486 5.64518 5.73321 5.74467 5.82689 5.84473 5.88845 5.92699 6.00727 6.06439 6.13173 6.19202 6.29117 6.35433 6.41040 6.44976 6.64140 6.78927 6.83684 7.00699 7.60985 7.73540 8.06025 8.28697 8.51764 9.12528 9.70078 11.19632 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030711 B = 0.006393 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.504732 B = 4378.736969 C = 5081.054430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.044 0.956 4 C 0.023 3.977 5 C -0.502 4.502 6 H 0.055 0.945 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 O -0.366 6.366 14 C 0.068 3.932 15 C -0.077 4.077 16 H 0.073 0.927 17 C -0.142 4.142 18 C -0.104 4.104 19 C -0.134 4.134 20 C -0.144 4.144 21 C -0.139 4.139 22 H 0.057 0.943 23 H 0.039 0.961 24 H 0.058 0.942 25 H 0.025 0.975 26 H 0.028 0.972 27 H 0.258 0.742 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 4.598 16.224 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.062 0.938 4 C -0.014 4.014 5 C -0.541 4.541 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 O -0.286 6.286 14 C -0.009 4.009 15 C -0.095 4.095 16 H 0.092 0.908 17 C -0.199 4.199 18 C -0.122 4.122 19 C -0.171 4.171 20 C -0.181 4.181 21 C -0.176 4.176 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.317 4.307 16.066 16.960 hybrid contribution 0.958 0.346 -0.175 1.034 sum -2.359 4.653 15.890 16.724 Atomic orbital electron populations 1.22327 0.98368 1.01791 1.00382 1.22354 0.90836 0.96040 0.87354 0.93778 1.19245 0.96275 0.96324 0.89512 1.21173 0.91926 1.33620 1.07359 0.92668 1.24990 0.98185 0.95568 0.95851 1.69967 1.35248 1.36506 1.12237 0.86570 0.86181 0.77730 0.77745 1.19809 1.21069 1.21191 1.87982 1.86606 1.34463 1.19502 1.22373 0.98010 0.93111 0.87407 1.21064 0.98239 0.97550 0.92661 0.90819 1.21726 0.95384 1.01114 1.01685 1.22557 0.97819 0.98033 0.93796 1.22953 0.99767 0.97980 0.96421 1.22844 0.99563 0.99073 0.96627 1.22947 0.97745 1.00975 0.95958 0.92434 0.94211 0.92309 0.95685 0.95351 0.93194 0.94210 0.94705 0.93182 0.93583 0.90916 0.89374 0.90099 0.91752 0.90525 0.91772 0.91741 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.53 37.16 0.35 -2.75 16 2 C 0.09 2.00 2.67 -26.73 -0.07 1.92 16 3 H 0.04 0.95 7.79 -51.93 -0.40 0.54 16 4 C 0.02 0.62 4.68 -27.88 -0.13 0.49 16 5 C -0.50 -14.55 8.88 -34.44 -0.31 -14.85 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 9 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 O -0.37 -7.87 9.28 -35.23 -0.33 -8.20 16 14 C 0.07 1.17 5.03 37.16 0.19 1.35 16 15 C -0.08 -1.12 2.35 -90.62 -0.21 -1.34 16 16 H 0.07 1.10 7.98 -51.93 -0.41 0.68 16 17 C -0.14 -2.22 9.07 37.16 0.34 -1.88 16 18 C -0.10 -1.22 3.11 -89.81 -0.28 -1.50 16 19 C -0.13 -1.36 7.63 -25.83 -0.20 -1.56 16 20 C -0.14 -1.33 8.09 -25.83 -0.21 -1.54 16 21 C -0.14 -1.47 6.66 -25.92 -0.17 -1.64 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.04 0.63 7.87 -51.93 -0.41 0.22 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.03 0.54 7.06 -51.93 -0.37 0.17 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.35 7.82 -51.93 -0.41 0.95 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.83 7.99 -51.93 -0.41 0.41 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 314.87 15.07 4.74 4.74 Total: -1.00 -30.49 314.87 -8.11 -38.60 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -7.45 Total: -3.75 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -0.80 Total: -21.80 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.74 Total: -26.78 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.33 Total: -8.20 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.49 -8.11 -38.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.711 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds