Wall clock time and date at job start Mon Mar 30 2020 02:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46886 * 119.99346 * 2 1 3 5 5 C 1.50706 * 109.47153 * 184.99546 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 O 1.42898 * 109.46999 * 239.99543 * 2 1 3 14 14 C 1.42896 * 114.00038 * 90.00045 * 13 2 1 15 15 C 1.52995 * 109.47061 * 179.97438 * 14 13 2 16 16 H 1.08998 * 109.47662 * 305.00453 * 15 14 13 17 17 C 1.53011 * 109.46996 * 65.00259 * 15 14 13 18 18 C 1.53001 * 109.47244 * 184.99996 * 15 14 13 19 19 C 1.53778 * 113.61658 * 159.14236 * 18 15 14 20 20 C 1.53957 * 87.01742 * 220.04981 * 19 18 15 21 21 C 1.53775 * 87.11215 * 25.36128 * 20 19 18 22 22 H 1.09007 * 109.46878 * 300.00364 * 1 2 3 23 23 H 1.09001 * 109.46923 * 60.00438 * 1 2 3 24 24 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47178 * 65.00336 * 4 2 1 26 26 H 1.08993 * 109.47411 * 305.00018 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 1.08998 * 109.47426 * 300.00266 * 14 13 2 29 29 H 1.09000 * 109.46884 * 59.99999 * 14 13 2 30 30 H 1.08994 * 109.46540 * 299.99925 * 17 15 14 31 31 H 1.08998 * 109.46757 * 59.99639 * 17 15 14 32 32 H 1.09004 * 109.46835 * 179.97438 * 17 15 14 33 33 H 1.09001 * 112.84885 * 290.33613 * 18 15 14 34 34 H 1.09007 * 113.61298 * 334.56447 * 19 18 15 35 35 H 1.08994 * 113.61913 * 105.47105 * 19 18 15 36 36 H 1.09000 * 113.53200 * 270.80596 * 20 19 18 37 37 H 1.08999 * 113.74149 * 139.94622 * 20 19 18 38 38 H 1.09001 * 113.61054 * 220.09267 * 21 20 19 39 39 H 1.09002 * 113.61513 * 89.19241 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0856 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5760 -1.8334 3.3023 9 14 6.0921 -1.0611 2.4369 10 1 6.5866 -1.7559 3.6526 11 1 6.6848 -1.6922 1.2304 12 1 6.4847 0.3700 2.4905 13 8 2.0063 -0.6737 -1.1667 14 6 2.2000 0.1827 -2.2941 15 6 2.7090 -0.6409 -3.4787 16 1 3.6079 -1.1829 -3.1850 17 6 1.6301 -1.6374 -3.9081 18 6 3.0348 0.2925 -4.6464 19 6 4.0014 -0.3201 -5.6736 20 6 4.6694 1.0649 -5.7510 21 6 4.1399 1.3136 -4.3289 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.7516 -1.7714 1.2058 26 1 1.6053 -0.2616 2.1370 27 1 2.6093 -1.9019 3.2614 28 1 1.2538 0.6545 -2.5589 29 1 2.9319 0.9511 -2.0450 30 1 1.3981 -2.3023 -3.0762 31 1 0.7312 -1.0954 -4.2017 32 1 1.9926 -2.2238 -4.7524 33 1 2.1457 0.7365 -5.0942 34 1 4.6473 -1.0937 -5.2581 35 1 3.5172 -0.6247 -6.6013 36 1 4.2278 1.7197 -6.5022 37 1 5.7570 1.0248 -5.8112 38 1 3.7673 2.3260 -4.1726 39 1 4.8237 0.9876 -3.5451 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695860217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:21 Heat of formation + Delta-G solvation = -64.111993 kcal Electronic energy + Delta-G solvation = -16158.254478 eV Core-core repulsion = 13679.331077 eV Total energy + Delta-G solvation = -2478.923400 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.29479 -37.46948 -33.98273 -32.73464 -30.74721 -26.99125 -26.60894 -25.29607 -24.63393 -22.87736 -20.46497 -20.27352 -19.36166 -16.73779 -16.19829 -15.49843 -14.86540 -14.73374 -14.18701 -13.64363 -13.26632 -12.79195 -12.60063 -12.48185 -12.36009 -12.16421 -11.77461 -11.69687 -11.38656 -11.14056 -10.92087 -10.77370 -10.61332 -10.47337 -10.40661 -10.04376 -9.98924 -9.87709 -9.48835 -8.82800 -8.35863 -8.25275 -6.26924 -3.93418 3.48137 3.51271 3.69453 4.26754 4.61900 4.62957 4.67368 4.79721 4.93451 5.23394 5.42917 5.50583 5.56470 5.61868 5.69053 5.73241 5.78557 5.80567 5.85647 5.91505 5.94747 5.96769 6.04363 6.07736 6.24200 6.26212 6.32862 6.41240 6.51960 6.66420 6.68050 6.84749 7.32915 7.44899 8.16043 8.32573 8.56027 8.97782 9.76232 11.13904 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.007149 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.261336 B = 3915.517237 C = 4744.886715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 H 0.046 0.954 4 C 0.010 3.990 5 C -0.585 4.585 6 H 0.048 0.952 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 O -0.366 6.366 14 C 0.069 3.931 15 C -0.080 4.080 16 H 0.080 0.920 17 C -0.139 4.139 18 C -0.103 4.103 19 C -0.134 4.134 20 C -0.144 4.144 21 C -0.140 4.140 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.016 0.984 26 H 0.019 0.981 27 H 0.267 0.733 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 5.090 -16.337 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.041 3.959 3 H 0.064 0.936 4 C -0.026 4.026 5 C -0.624 4.624 6 H 0.066 0.934 7 C -0.191 4.191 8 N -0.555 5.555 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.216 1.216 13 O -0.285 6.285 14 C -0.008 4.008 15 C -0.098 4.098 16 H 0.098 0.902 17 C -0.196 4.196 18 C -0.122 4.122 19 C -0.171 4.171 20 C -0.181 4.181 21 C -0.177 4.177 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.630 4.468 -15.436 16.082 hybrid contribution -1.495 0.789 -0.942 1.935 sum -2.124 5.258 -16.378 17.332 Atomic orbital electron populations 1.22342 0.98297 1.01796 1.00529 1.22157 0.90724 0.95938 0.87045 0.93631 1.19352 0.97344 0.95671 0.90279 1.21939 0.91626 1.38025 1.10792 0.93406 1.25799 1.06793 0.93715 0.92800 1.70783 1.10215 1.40427 1.34031 0.83568 0.74628 0.76139 0.76049 1.20836 1.21490 1.21593 1.87974 1.86640 1.34461 1.19413 1.22373 0.98054 0.93089 0.87293 1.21095 0.99738 0.96072 0.92930 0.90211 1.21708 0.97770 0.99053 1.01086 1.22536 0.97059 0.96650 0.95920 1.22956 0.98371 0.96854 0.98927 1.22839 1.00256 0.97494 0.97508 1.22967 0.98463 0.99195 0.97105 0.92350 0.93959 0.92459 0.96614 0.96338 0.92255 0.94904 0.93929 0.91697 0.93457 0.93263 0.89562 0.89963 0.91827 0.90587 0.91635 0.91732 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.53 37.16 0.35 -2.78 16 2 C 0.10 2.18 2.67 -26.73 -0.07 2.11 16 3 H 0.05 1.00 7.79 -51.93 -0.40 0.59 16 4 C 0.01 0.28 4.00 -27.88 -0.11 0.17 16 5 C -0.59 -17.27 8.88 -34.44 -0.31 -17.58 16 6 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.89 13.65 55.43 0.76 -28.14 16 9 Si 1.07 26.19 29.90 -169.99 -5.08 21.10 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 O -0.37 -7.97 9.28 -35.23 -0.33 -8.29 16 14 C 0.07 1.19 5.02 37.15 0.19 1.38 16 15 C -0.08 -1.18 2.35 -90.62 -0.21 -1.39 16 16 H 0.08 1.31 7.98 -51.93 -0.41 0.89 16 17 C -0.14 -1.91 9.07 37.16 0.34 -1.57 16 18 C -0.10 -1.22 3.11 -89.81 -0.28 -1.50 16 19 C -0.13 -1.41 7.63 -25.83 -0.20 -1.61 16 20 C -0.14 -1.43 8.09 -25.83 -0.21 -1.64 16 21 C -0.14 -1.64 6.66 -25.92 -0.17 -1.81 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.04 0.67 7.87 -51.93 -0.41 0.26 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 26 H 0.02 0.50 8.00 -51.93 -0.42 0.09 16 27 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 28 H 0.03 0.52 7.87 -51.93 -0.41 0.11 16 29 H 0.04 0.75 7.28 -51.93 -0.38 0.37 16 30 H 0.06 1.02 7.82 -51.93 -0.41 0.62 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.91 7.99 -51.93 -0.41 0.49 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 LS Contribution 313.55 15.07 4.73 4.73 Total: -1.00 -31.50 313.55 -8.10 -39.60 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -7.39 Total: -3.03 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -0.78 Total: -25.97 kcal Atomic # 7 Polarization: -28.89 SS G_CDS: 0.76 Total: -28.14 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.33 Total: -8.29 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -5.08 Total: 21.10 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.50 -8.10 -39.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.513 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds