Wall clock time and date at job start Mon Mar 30 2020 02:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47550 * 2 1 4 4 C 1.52999 * 109.47395 * 120.00170 * 2 1 3 5 5 O 1.42898 * 109.47093 * 295.00199 * 4 2 1 6 6 C 1.42899 * 114.00251 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.47053 * 329.99362 * 6 5 4 8 8 C 1.53002 * 109.47298 * 89.99593 * 6 5 4 9 9 C 1.53004 * 109.46941 * 209.99513 * 6 5 4 10 10 C 1.50699 * 109.46847 * 64.99887 * 9 6 5 11 11 H 1.08002 * 120.00511 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99783 * 179.97438 * 10 9 6 13 13 N 1.31514 * 119.99573 * 180.27665 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 89.99934 * 14 12 10 16 16 H 1.48499 * 109.47026 * 209.99782 * 14 12 10 17 17 H 1.48496 * 109.47474 * 329.99818 * 14 12 10 18 18 C 1.53005 * 109.46934 * 240.00075 * 2 1 3 19 19 C 1.53781 * 113.61550 * 157.50110 * 18 2 1 20 20 C 1.53784 * 87.08108 * 220.01760 * 19 18 2 21 21 C 1.53778 * 113.61588 * 60.00157 * 18 2 1 22 22 H 1.08998 * 109.47550 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47266 * 300.00073 * 1 2 3 24 24 H 1.09006 * 109.47540 * 59.99759 * 1 2 3 25 25 H 1.08998 * 109.47521 * 174.99952 * 4 2 1 26 26 H 1.09001 * 109.47016 * 54.99749 * 4 2 1 27 27 H 1.08997 * 109.46706 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47292 * 299.99813 * 8 6 5 29 29 H 1.09000 * 109.47257 * 59.99894 * 8 6 5 30 30 H 1.08992 * 109.47264 * 305.00061 * 9 6 5 31 31 H 1.09005 * 109.46510 * 184.99648 * 9 6 5 32 32 H 0.97004 * 119.99485 * 179.72881 * 13 12 10 33 33 H 1.09003 * 112.84797 * 288.80112 * 18 2 1 34 34 H 1.09002 * 113.61436 * 334.56309 * 19 18 2 35 35 H 1.08996 * 113.62201 * 105.46768 * 19 18 2 36 36 H 1.08999 * 113.61299 * 270.88276 * 20 19 18 37 37 H 1.08997 * 113.68774 * 139.98884 * 20 19 18 38 38 H 1.09002 * 113.61133 * 254.53000 * 21 18 2 39 39 H 1.08998 * 113.61238 * 25.43332 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 0.0167 2.4130 6 6 2.0923 -0.5739 3.6410 7 1 2.1398 -1.6568 3.5263 8 6 3.4783 -0.0384 4.0063 9 6 1.1005 -0.2217 4.7515 10 6 -0.2344 -0.8533 4.4516 11 1 -0.3626 -1.4470 3.5586 12 6 -1.2921 -0.6742 5.3180 13 7 -2.4555 -1.2299 5.0590 14 14 -1.0698 0.3509 6.8637 15 1 -1.3946 1.7694 6.5677 16 1 -1.9764 -0.1531 7.9264 17 1 0.3379 0.2513 7.3256 18 6 2.0399 -0.7213 -1.2493 19 6 3.4725 -0.3278 -1.6461 20 6 2.9920 -0.3573 -3.1067 21 6 1.5810 -0.0723 -2.5658 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 3.1263 -0.7995 1.2056 26 1 1.6053 -1.7198 1.2951 27 1 3.8067 -0.4893 4.9427 28 1 4.1849 -0.2894 3.2152 29 1 3.4308 1.0445 4.1210 30 1 0.9861 0.8608 4.8065 31 1 1.4740 -0.5965 5.7045 32 1 -3.1985 -1.1071 5.6705 33 1 1.8757 -1.7982 -1.2129 34 1 3.7638 0.6648 -1.3024 35 1 4.2151 -1.0915 -1.4152 36 1 3.0895 -1.3350 -3.5786 37 1 3.3969 0.4497 -3.7173 38 1 0.7964 -0.6300 -3.0772 39 1 1.3552 0.9900 -2.4733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695860218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:24 Heat of formation + Delta-G solvation = -56.252122 kcal Electronic energy + Delta-G solvation = -16108.786160 eV Core-core repulsion = 13630.203590 eV Total energy + Delta-G solvation = -2478.582571 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.27197 -37.48159 -33.80101 -32.49778 -30.95821 -27.84223 -26.58906 -25.11147 -24.75439 -22.71752 -20.41449 -20.01557 -19.27596 -16.65301 -16.09149 -15.55131 -14.99956 -14.70830 -14.32888 -13.66989 -13.17095 -12.79745 -12.53015 -12.47514 -12.26476 -12.12981 -11.83784 -11.65101 -11.52022 -11.37648 -11.00862 -10.67985 -10.59992 -10.34627 -10.28975 -9.97226 -9.85415 -9.73094 -9.59529 -9.12135 -8.61739 -8.45788 -5.95479 -3.91210 3.36343 3.42891 3.45780 4.30459 4.52152 4.63046 4.67894 4.80635 4.91862 5.31404 5.39250 5.53109 5.60406 5.62899 5.71277 5.74288 5.79550 5.84524 5.87834 5.88969 5.95531 6.04059 6.09533 6.17941 6.26926 6.34985 6.38522 6.48089 6.63355 6.67290 6.78438 6.90330 7.21009 7.30121 7.84808 8.17800 8.63713 9.10840 9.66773 11.18324 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.037862 B = 0.005986 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.352532 B = 4676.126290 C = 5209.286193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 H 0.072 0.928 4 C 0.069 3.931 5 O -0.365 6.365 6 C 0.100 3.900 7 H 0.050 0.950 8 C -0.174 4.174 9 C -0.013 4.013 10 C -0.504 4.504 11 H 0.072 0.928 12 C 0.064 3.936 13 N -0.906 5.906 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.267 1.267 18 C -0.104 4.104 19 C -0.138 4.138 20 C -0.144 4.144 21 C -0.133 4.133 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.020 0.980 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.233 1.860 -12.132 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 H 0.091 0.909 4 C -0.008 4.008 5 O -0.284 6.284 6 C 0.043 3.957 7 H 0.068 0.932 8 C -0.231 4.231 9 C -0.050 4.050 10 C -0.542 4.542 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.546 5.546 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.192 1.192 18 C -0.122 4.122 19 C -0.176 4.176 20 C -0.182 4.182 21 C -0.170 4.170 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.946 2.011 -12.064 16.413 hybrid contribution 0.142 0.231 0.877 0.918 sum 11.088 2.242 -11.187 15.910 Atomic orbital electron populations 1.21715 0.94162 1.02019 1.01930 1.21065 0.96941 0.99355 0.92077 0.90930 1.22395 0.96978 0.95041 0.86380 1.87966 1.78339 1.49213 1.12921 1.22078 0.92457 0.95831 0.85367 0.93150 1.22361 0.98136 1.01980 1.00666 1.19723 0.95260 0.97355 0.92693 1.21031 0.93101 1.31296 1.08792 0.90963 1.25001 0.95158 0.95575 0.97864 1.69917 1.01903 1.45180 1.37568 0.86817 0.78233 0.80928 0.83500 1.20335 1.21523 1.19173 1.22545 0.95737 1.00002 0.93923 1.22977 0.96740 1.01779 0.96073 1.22816 0.97288 1.01512 0.96539 1.22892 0.96530 1.01148 0.96448 0.93007 0.90937 0.93560 0.94813 0.93913 0.92293 0.93788 0.92450 0.96184 0.95474 0.92925 0.89350 0.90121 0.91825 0.90505 0.91812 0.91669 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.89 37.15 0.33 -1.96 16 2 C -0.08 -1.12 2.38 -90.62 -0.22 -1.34 16 3 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 4 C 0.07 1.18 5.12 37.16 0.19 1.37 16 5 O -0.37 -7.73 9.28 -35.23 -0.33 -8.05 16 6 C 0.10 2.10 2.67 -26.73 -0.07 2.03 16 7 H 0.05 1.05 7.79 -51.93 -0.40 0.65 16 8 C -0.17 -2.96 9.53 37.16 0.35 -2.60 16 9 C -0.01 -0.32 3.75 -27.88 -0.10 -0.43 16 10 C -0.50 -14.71 9.43 -34.44 -0.32 -15.03 16 11 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 12 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.91 -28.45 13.96 55.43 0.77 -27.67 16 14 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 18 C -0.10 -1.24 3.13 -89.81 -0.28 -1.52 16 19 C -0.14 -1.45 7.63 -25.92 -0.20 -1.65 16 20 C -0.14 -1.35 8.08 -25.92 -0.21 -1.56 16 21 C -0.13 -1.39 6.68 -25.92 -0.17 -1.57 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.07 1.41 7.82 -51.93 -0.41 1.00 16 24 H 0.05 0.64 7.45 -51.93 -0.39 0.26 16 25 H 0.03 0.52 7.87 -51.93 -0.41 0.11 16 26 H 0.04 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.66 7.87 -51.93 -0.41 0.25 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 31 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 311.30 15.07 4.69 4.69 Total: -1.00 -30.96 311.30 -7.75 -38.71 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.42 Total: -2.76 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -0.80 Total: -22.43 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.77 Total: -27.67 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.33 Total: -8.05 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.96 -7.75 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.543 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds