Wall clock time and date at job start Mon Mar 30 2020 02:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99980 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99806 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46754 * 90.00399 * 9 7 5 11 11 H 1.48503 * 109.46996 * 209.99720 * 9 7 5 12 12 H 1.48501 * 109.47356 * 330.00401 * 9 7 5 13 13 O 1.42903 * 109.46923 * 120.00164 * 2 1 3 14 14 C 1.42909 * 113.99516 * 270.00121 * 13 2 1 15 15 C 1.52999 * 109.46634 * 179.97438 * 14 13 2 16 16 H 1.09004 * 109.47243 * 55.00238 * 15 14 13 17 17 C 1.53003 * 109.47425 * 294.99719 * 15 14 13 18 18 C 1.53007 * 109.46977 * 174.99754 * 15 14 13 19 19 C 1.53781 * 113.61416 * 277.49764 * 18 15 14 20 20 C 1.53777 * 87.07811 * 220.01623 * 19 18 15 21 21 C 1.53781 * 87.08433 * 25.43664 * 20 19 18 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 26 26 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 27 27 H 0.97004 * 119.99775 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46835 * 299.99639 * 14 13 2 29 29 H 1.08994 * 109.47272 * 60.00221 * 14 13 2 30 30 H 1.08999 * 109.46726 * 59.99876 * 17 15 14 31 31 H 1.08994 * 109.47413 * 179.97438 * 17 15 14 32 32 H 1.08996 * 109.46755 * 300.00212 * 17 15 14 33 33 H 1.09003 * 112.84227 * 48.80355 * 18 15 14 34 34 H 1.09000 * 113.61559 * 334.56884 * 19 18 15 35 35 H 1.08997 * 113.61330 * 105.47012 * 19 18 15 36 36 H 1.08995 * 113.61850 * 270.88306 * 20 19 18 37 37 H 1.09002 * 113.68960 * 139.99327 * 20 19 18 38 38 H 1.09003 * 113.61533 * 220.02051 * 21 20 19 39 39 H 1.08999 * 113.69576 * 89.12234 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 5.5412 -1.1004 -2.4133 9 14 3.3016 -2.1080 -3.6957 10 1 2.9400 -1.1628 -4.7825 11 1 4.1605 -3.1880 -4.2445 12 1 2.0660 -2.7005 -3.1235 13 8 2.0063 -0.6737 1.1668 14 6 2.2000 0.1830 2.2941 15 6 2.7077 -0.6408 3.4792 16 1 3.6066 -1.1833 3.1861 17 6 1.6281 -1.6364 3.9082 18 6 3.0336 0.2927 4.6469 19 6 4.4230 0.9441 4.5457 20 6 4.5526 0.7180 6.0612 21 6 3.5547 -0.4400 5.8945 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2618 -2.1369 27 1 6.0256 -1.5065 -3.1491 28 1 2.9319 0.9513 2.0451 29 1 1.2537 0.6547 2.5589 30 1 1.3960 -2.3014 3.0764 31 1 1.9900 -2.2236 4.7522 32 1 0.7294 -1.0938 4.2014 33 1 2.2323 1.0007 4.8590 34 1 5.1342 0.3661 3.9555 35 1 4.3924 1.9961 4.2622 36 1 4.1678 1.5433 6.6603 37 1 5.5465 0.3965 6.3726 38 1 2.8230 -0.5054 6.6999 39 1 4.0272 -1.3971 5.6732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695860219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:26 Heat of formation + Delta-G solvation = -56.293233 kcal Electronic energy + Delta-G solvation = -16099.767155 eV Core-core repulsion = 13621.182801 eV Total energy + Delta-G solvation = -2478.584353 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.24171 -37.47526 -33.82913 -32.50152 -30.98666 -27.84314 -26.63390 -25.12632 -24.72744 -22.72233 -20.39719 -20.00917 -19.27193 -16.67404 -16.13609 -15.48985 -14.82117 -14.71636 -14.42323 -13.84986 -13.04116 -12.83601 -12.53509 -12.41517 -12.30180 -12.17562 -11.84484 -11.66627 -11.59994 -11.51139 -10.85494 -10.71497 -10.58626 -10.44299 -10.29678 -10.00146 -9.86025 -9.71304 -9.52793 -9.12205 -8.62480 -8.46328 -5.95732 -3.91537 3.34954 3.42677 3.47249 4.30965 4.52069 4.67051 4.72691 4.86104 4.96274 5.28975 5.39037 5.49253 5.58896 5.65562 5.72324 5.74924 5.82353 5.84271 5.89958 5.90502 5.97393 6.03126 6.07974 6.10264 6.25490 6.30948 6.36363 6.48225 6.55988 6.63824 6.70718 6.79236 7.17536 7.32968 7.84667 8.17983 8.63411 9.10443 9.66467 11.18125 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.006295 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.648999 B = 4446.791582 C = 4985.815630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.050 0.950 4 C -0.013 4.013 5 C -0.505 4.505 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 O -0.365 6.365 14 C 0.070 3.930 15 C -0.080 4.080 16 H 0.081 0.919 17 C -0.139 4.139 18 C -0.103 4.103 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.133 4.133 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.261 0.739 28 H 0.043 0.957 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 2.837 14.133 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.043 3.957 3 H 0.068 0.932 4 C -0.050 4.050 5 C -0.543 4.543 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.190 1.190 13 O -0.284 6.284 14 C -0.007 4.007 15 C -0.098 4.098 16 H 0.099 0.901 17 C -0.196 4.196 18 C -0.122 4.122 19 C -0.176 4.176 20 C -0.182 4.182 21 C -0.170 4.170 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.829 2.582 14.029 15.814 hybrid contribution -0.425 -0.148 -0.817 0.933 sum -7.254 2.433 13.211 15.267 Atomic orbital electron populations 1.22359 0.98243 1.01830 1.00688 1.22070 0.90687 0.96136 0.86837 0.93172 1.19712 0.97766 0.96338 0.91216 1.21036 0.89608 1.34601 1.09037 0.91009 1.25007 0.94733 0.95979 0.97924 1.69918 1.06495 1.45896 1.32294 0.86820 0.80335 0.80035 0.82340 1.20422 1.21430 1.19018 1.87969 1.86623 1.34416 1.19401 1.22379 0.97995 0.93114 0.87222 1.21101 0.99773 0.96124 0.92850 0.90083 1.21708 0.97832 0.98993 1.01063 1.22521 0.96963 0.97712 0.94960 1.22991 0.97392 1.01064 0.96157 1.22813 0.99587 0.98729 0.97041 1.22893 0.98564 0.98014 0.97529 0.93792 0.92304 0.92440 0.95733 0.95893 0.92914 0.93828 0.94884 0.91753 0.93222 0.93505 0.89629 0.89614 0.91701 0.90613 0.91693 0.91912 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 9.53 37.16 0.35 -2.60 16 2 C 0.10 2.11 2.67 -26.73 -0.07 2.04 16 3 H 0.05 1.05 7.79 -51.93 -0.40 0.65 16 4 C -0.01 -0.32 3.75 -27.88 -0.10 -0.43 16 5 C -0.50 -14.82 9.43 -34.44 -0.32 -15.14 16 6 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 9 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 13 O -0.37 -7.74 9.28 -35.23 -0.33 -8.07 16 14 C 0.07 1.20 5.12 37.16 0.19 1.39 16 15 C -0.08 -1.18 2.38 -90.62 -0.22 -1.40 16 16 H 0.08 1.36 7.94 -51.93 -0.41 0.94 16 17 C -0.14 -1.88 8.89 37.16 0.33 -1.55 16 18 C -0.10 -1.25 3.13 -89.80 -0.28 -1.53 16 19 C -0.14 -1.68 7.63 -25.92 -0.20 -1.88 16 20 C -0.14 -1.47 8.08 -25.92 -0.21 -1.68 16 21 C -0.13 -1.40 6.68 -25.92 -0.17 -1.58 16 22 H 0.04 0.66 7.87 -51.93 -0.41 0.25 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 26 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.03 0.51 7.87 -51.93 -0.41 0.10 16 30 H 0.06 0.99 7.82 -51.93 -0.41 0.58 16 31 H 0.05 0.59 7.45 -51.93 -0.39 0.20 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.15 7.96 -51.93 -0.41 0.73 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 LS Contribution 311.30 15.07 4.69 4.69 Total: -1.00 -31.20 311.30 -7.75 -38.95 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.42 Total: -2.76 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -0.80 Total: -22.55 kcal Atomic # 7 Polarization: -28.58 SS G_CDS: 0.77 Total: -27.80 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.33 Total: -8.07 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.20 -7.75 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.345 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds