Wall clock time and date at job start Mon Mar 30 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00283 * 2 1 4 4 H 1.48504 * 109.47044 * 240.00123 * 3 2 1 5 5 H 1.48500 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47196 * 120.00013 * 3 2 1 7 7 C 1.37876 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00206 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47384 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47292 * 180.02562 * 10 9 7 12 12 C 1.46863 * 110.99631 * 66.04549 * 11 10 9 13 13 C 1.52748 * 109.66995 * 159.05420 * 12 11 10 14 14 C 1.52788 * 109.91124 * 315.57012 * 13 12 11 15 15 C 1.53073 * 109.53428 * 112.01023 * 14 13 12 16 16 C 1.53072 * 108.93117 * 284.63885 * 15 14 13 17 17 C 1.52806 * 109.57598 * 75.39036 * 16 15 14 18 18 H 1.09003 * 109.40090 * 8.10414 * 17 16 15 19 19 N 1.46902 * 109.39971 * 127.84493 * 17 16 15 20 20 C 1.46864 * 110.99882 * 302.00297 * 11 10 9 21 21 H 0.96999 * 119.99699 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.46610 * 59.99773 * 9 7 2 23 23 H 1.09002 * 109.47266 * 300.00072 * 9 7 2 24 24 H 1.08998 * 109.47480 * 60.00178 * 10 9 7 25 25 H 1.09002 * 109.47096 * 300.00321 * 10 9 7 26 26 H 1.09001 * 109.44036 * 39.00210 * 12 11 10 27 27 H 1.08997 * 109.43933 * 279.11453 * 12 11 10 28 28 H 1.09009 * 109.40125 * 195.43669 * 13 12 11 29 29 H 1.09007 * 109.39870 * 75.70825 * 13 12 11 30 30 H 1.09004 * 109.46199 * 351.99568 * 14 13 12 31 31 H 1.08997 * 109.46458 * 232.03035 * 14 13 12 32 32 H 1.08994 * 109.56213 * 164.80140 * 15 14 13 33 33 H 1.09002 * 109.64958 * 44.52517 * 15 14 13 34 34 H 1.09000 * 109.45321 * 315.35922 * 16 15 14 35 35 H 1.09003 * 109.43965 * 195.41114 * 16 15 14 36 36 H 1.00903 * 111.00245 * 299.99996 * 19 17 16 37 37 H 1.00897 * 110.99944 * 63.95472 * 19 17 16 38 38 H 1.09002 * 109.43481 * 80.85854 * 20 11 10 39 39 H 1.09000 * 109.43888 * 320.97571 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5106 -4.9343 0.0020 12 6 0.7648 -5.1119 -1.2507 13 6 0.4530 -6.5928 -1.4579 14 6 1.6907 -7.4334 -1.1484 15 6 1.4437 -8.2623 0.1146 16 6 1.5399 -7.3457 1.3368 17 6 0.2774 -6.4906 1.4361 18 1 -0.4514 -6.8344 0.7021 19 7 -0.2929 -6.6173 2.7839 20 6 0.6187 -5.0266 1.1651 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5574 -0.8881 23 1 0.6247 -2.5564 0.8920 24 1 2.8725 -3.6040 0.8909 25 1 2.8712 -3.6047 -0.8890 26 1 1.3646 -4.7475 -2.0847 27 1 -0.1669 -4.5485 -1.2011 28 1 0.1525 -6.7582 -2.4926 29 1 -0.3602 -6.8878 -0.7946 30 1 2.5458 -6.7762 -0.9900 31 1 1.8956 -8.1002 -1.9860 32 1 2.1951 -9.0484 0.1879 33 1 0.4506 -8.7095 0.0711 34 1 2.4105 -6.6975 1.2368 35 1 1.6399 -7.9514 2.2375 36 1 -0.5341 -7.5760 2.9859 37 1 0.3381 -6.2489 3.4797 38 1 -0.2977 -4.4716 0.9643 39 1 1.1154 -4.6023 2.0377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709003651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:09 Heat of formation + Delta-G solvation = -8.317216 kcal Electronic energy + Delta-G solvation = -16707.897577 eV Core-core repulsion = 14263.686371 eV Total energy + Delta-G solvation = -2444.211206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.21329 -35.57020 -34.13798 -32.80698 -30.38129 -29.19442 -26.53463 -25.80480 -23.79982 -22.01648 -20.49058 -20.41291 -19.28398 -16.50169 -15.75195 -15.42431 -14.61627 -14.46611 -14.27956 -14.03790 -13.67208 -13.49516 -12.94124 -12.34695 -12.14347 -12.08959 -11.57719 -11.28663 -11.00671 -10.89147 -10.80269 -10.73437 -10.55159 -10.36461 -10.19627 -9.86283 -9.72622 -9.62735 -9.14982 -8.47773 -8.34967 -7.47862 -6.00578 -4.03938 3.32494 3.37024 3.39330 4.37266 4.47354 4.88802 4.97551 5.14370 5.30267 5.34609 5.44275 5.47661 5.56041 5.65385 5.76971 5.98854 6.06780 6.13081 6.19383 6.25734 6.31238 6.40955 6.45289 6.50129 6.50730 6.67699 6.72456 6.80415 6.92476 7.31228 7.54335 7.57402 7.62712 7.72105 7.90079 8.01011 8.42668 9.03276 9.60310 11.10319 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040067 B = 0.006372 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.663318 B = 4393.208300 C = 4668.314337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.055 0.945 9 C -0.008 4.008 10 C 0.058 3.942 11 N -0.535 5.535 12 C 0.054 3.946 13 C -0.123 4.123 14 C -0.110 4.110 15 C -0.109 4.109 16 C -0.143 4.143 17 C 0.086 3.914 18 H 0.083 0.917 19 N -0.847 5.847 20 C 0.066 3.934 21 H 0.261 0.739 22 H 0.015 0.985 23 H 0.018 0.982 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.336 0.664 37 H 0.337 0.663 38 H 0.045 0.955 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.639 -15.138 0.783 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.046 4.046 10 C -0.069 4.069 11 N -0.258 5.258 12 C -0.074 4.074 13 C -0.161 4.161 14 C -0.148 4.148 15 C -0.147 4.147 16 C -0.182 4.182 17 C -0.025 4.025 18 H 0.101 0.899 19 N -0.376 5.376 20 C -0.063 4.063 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.063 0.937 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.244 -14.906 0.546 14.968 hybrid contribution 0.610 1.099 0.127 1.264 sum 1.854 -13.807 0.673 13.947 Atomic orbital electron populations 1.69959 1.06083 1.26707 1.50621 1.25022 0.94821 0.99257 0.95244 0.86661 0.79586 0.83159 0.78616 1.20248 1.21301 1.20230 1.21138 0.92946 0.91042 1.50888 0.92723 1.19672 0.94871 0.92709 0.97335 1.22372 0.96737 0.86913 1.00857 1.62223 1.27081 1.34986 1.01496 1.22041 0.97414 0.95174 0.92779 1.21830 0.98205 0.95626 1.00401 1.21491 0.99577 0.97768 0.95918 1.21604 1.00287 0.97144 0.95688 1.22416 1.01197 0.98017 0.96602 1.21794 0.94495 0.95910 0.90339 0.89893 1.58880 1.49795 1.25160 1.03794 1.21914 0.96105 0.94201 0.94041 0.92954 0.96645 0.96369 0.92162 0.92109 0.91398 0.94253 0.92599 0.91815 0.89866 0.93811 0.93135 0.92979 0.89669 0.93939 0.85190 0.85000 0.93661 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C -0.01 -0.20 4.38 -27.89 -0.12 -0.32 16 10 C 0.06 1.20 5.15 -3.83 -0.02 1.18 16 11 N -0.53 -9.25 2.14 -235.01 -0.50 -9.76 16 12 C 0.05 0.91 4.37 -3.97 -0.02 0.89 16 13 C -0.12 -1.66 5.44 -26.97 -0.15 -1.80 16 14 C -0.11 -1.38 5.48 -26.80 -0.15 -1.52 16 15 C -0.11 -1.26 5.64 -26.66 -0.15 -1.41 16 16 C -0.14 -1.78 5.23 -26.79 -0.14 -1.92 16 17 C 0.09 1.19 2.78 -67.94 -0.19 1.00 16 18 H 0.08 1.19 4.71 -51.93 -0.24 0.94 16 19 N -0.85 -10.64 9.09 -4.86 -0.04 -10.68 16 20 C 0.07 1.14 3.63 -3.97 -0.01 1.13 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.02 0.42 7.06 -51.92 -0.37 0.06 16 23 H 0.02 0.50 6.86 -51.93 -0.36 0.14 16 24 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 25 H 0.06 1.24 7.92 -51.93 -0.41 0.83 16 26 H 0.07 1.15 7.77 -51.93 -0.40 0.75 16 27 H 0.04 0.74 7.13 -51.93 -0.37 0.37 16 28 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.06 0.86 4.70 -51.93 -0.24 0.62 16 30 H 0.08 1.18 6.58 -51.93 -0.34 0.84 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.58 7.50 -51.93 -0.39 0.19 16 34 H 0.08 1.22 6.58 -51.93 -0.34 0.88 16 35 H 0.04 0.48 7.83 -51.93 -0.41 0.07 16 36 H 0.34 3.48 8.99 -39.29 -0.35 3.13 16 37 H 0.34 4.01 8.89 -39.29 -0.35 3.66 16 38 H 0.05 0.91 7.08 -51.93 -0.37 0.54 16 39 H 0.07 1.22 7.77 -51.93 -0.40 0.82 16 LS Contribution 287.99 15.07 4.34 4.34 Total: -1.00 -29.29 287.99 -8.43 -37.72 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.58 Total: 4.32 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -1.36 Total: -16.29 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.19 Total: -46.87 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.29 -8.43 -37.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709003651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.404 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds