Wall clock time and date at job start Mon Mar 30 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00283 * 2 1 4 4 H 1.48504 * 109.47044 * 240.00123 * 3 2 1 5 5 H 1.48500 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47196 * 120.00013 * 3 2 1 7 7 C 1.37876 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00206 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47384 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47292 * 180.02562 * 10 9 7 12 12 C 1.46863 * 110.99631 * 66.04549 * 11 10 9 13 13 C 1.52748 * 109.66995 * 159.05420 * 12 11 10 14 14 C 1.52788 * 109.91124 * 315.57012 * 13 12 11 15 15 C 1.53073 * 109.53428 * 112.01023 * 14 13 12 16 16 C 1.53072 * 108.93117 * 284.63885 * 15 14 13 17 17 C 1.52806 * 109.57598 * 75.39036 * 16 15 14 18 18 H 1.09003 * 109.40090 * 8.10414 * 17 16 15 19 19 N 1.46902 * 109.39971 * 127.84493 * 17 16 15 20 20 C 1.46864 * 110.99882 * 302.00297 * 11 10 9 21 21 H 0.96999 * 119.99699 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.46610 * 59.99773 * 9 7 2 23 23 H 1.09002 * 109.47266 * 300.00072 * 9 7 2 24 24 H 1.08998 * 109.47480 * 60.00178 * 10 9 7 25 25 H 1.09002 * 109.47096 * 300.00321 * 10 9 7 26 26 H 1.09001 * 109.44036 * 39.00210 * 12 11 10 27 27 H 1.08997 * 109.43933 * 279.11453 * 12 11 10 28 28 H 1.09009 * 109.40125 * 195.43669 * 13 12 11 29 29 H 1.09007 * 109.39870 * 75.70825 * 13 12 11 30 30 H 1.09004 * 109.46199 * 351.99568 * 14 13 12 31 31 H 1.08997 * 109.46458 * 232.03035 * 14 13 12 32 32 H 1.08994 * 109.56213 * 164.80140 * 15 14 13 33 33 H 1.09002 * 109.64958 * 44.52517 * 15 14 13 34 34 H 1.09000 * 109.45321 * 315.35922 * 16 15 14 35 35 H 1.09003 * 109.43965 * 195.41114 * 16 15 14 36 36 H 1.00903 * 111.00245 * 299.99996 * 19 17 16 37 37 H 1.00897 * 110.99944 * 63.95472 * 19 17 16 38 38 H 1.09002 * 109.43481 * 80.85854 * 20 11 10 39 39 H 1.09000 * 109.43888 * 320.97571 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5106 -4.9343 0.0020 12 6 0.7648 -5.1119 -1.2507 13 6 0.4530 -6.5928 -1.4579 14 6 1.6907 -7.4334 -1.1484 15 6 1.4437 -8.2623 0.1146 16 6 1.5399 -7.3457 1.3368 17 6 0.2774 -6.4906 1.4361 18 1 -0.4514 -6.8344 0.7021 19 7 -0.2929 -6.6173 2.7839 20 6 0.6187 -5.0266 1.1651 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5574 -0.8881 23 1 0.6247 -2.5564 0.8920 24 1 2.8725 -3.6040 0.8909 25 1 2.8712 -3.6047 -0.8890 26 1 1.3646 -4.7475 -2.0847 27 1 -0.1669 -4.5485 -1.2011 28 1 0.1525 -6.7582 -2.4926 29 1 -0.3602 -6.8878 -0.7946 30 1 2.5458 -6.7762 -0.9900 31 1 1.8956 -8.1002 -1.9860 32 1 2.1951 -9.0484 0.1879 33 1 0.4506 -8.7095 0.0711 34 1 2.4105 -6.6975 1.2368 35 1 1.6399 -7.9514 2.2375 36 1 -0.5341 -7.5760 2.9859 37 1 0.3381 -6.2489 3.4797 38 1 -0.2977 -4.4716 0.9643 39 1 1.1154 -4.6023 2.0377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709003651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:08 Heat of formation + Delta-G solvation = -27.480005 kcal Electronic energy + Delta-G solvation = -16708.728538 eV Core-core repulsion = 14263.686371 eV Total energy + Delta-G solvation = -2445.042167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52421 -37.00868 -35.33063 -34.81235 -31.85878 -30.73453 -28.13648 -27.02914 -25.59937 -23.59541 -21.75044 -21.58305 -20.73544 -18.63958 -17.01295 -16.72494 -16.51689 -15.92905 -15.57778 -15.24830 -15.03067 -14.89318 -14.29275 -14.11646 -13.72634 -13.51776 -13.04810 -12.84879 -12.74648 -12.58068 -12.22185 -12.06656 -11.97505 -11.70850 -11.65475 -11.43043 -11.35179 -11.22669 -10.76382 -10.57900 -9.51719 -9.08002 -8.22414 -6.35648 1.37421 1.40696 1.48679 2.37982 3.01045 3.09714 3.74359 3.85709 4.10226 4.18912 4.26321 4.33514 4.37305 4.41030 4.48591 4.65386 4.68785 4.87379 4.91019 4.94215 5.00124 5.07060 5.12355 5.27664 5.32953 5.40202 5.43836 5.45303 5.54244 5.60296 5.73109 5.77204 6.01462 6.19683 6.34190 6.39495 6.69474 6.82622 7.34182 8.88212 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040067 B = 0.006372 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.663318 B = 4393.208300 C = 4668.314337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.004 3.996 10 C 0.071 3.929 11 N -0.514 5.514 12 C 0.053 3.947 13 C -0.115 4.115 14 C -0.107 4.107 15 C -0.106 4.106 16 C -0.136 4.136 17 C 0.098 3.902 18 H 0.083 0.917 19 N -0.855 5.855 20 C 0.071 3.929 21 H 0.263 0.737 22 H -0.014 1.014 23 H -0.012 1.012 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.009 0.991 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.352 0.648 37 H 0.342 0.658 38 H 0.007 0.993 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 -16.498 0.805 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.034 4.034 10 C -0.056 4.056 11 N -0.237 5.237 12 C -0.075 4.075 13 C -0.152 4.152 14 C -0.145 4.145 15 C -0.143 4.143 16 C -0.175 4.175 17 C -0.014 4.014 18 H 0.100 0.900 19 N -0.386 5.386 20 C -0.058 4.058 21 H 0.072 0.928 22 H 0.005 0.995 23 H 0.006 0.994 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.027 0.973 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.167 0.833 37 H 0.155 0.845 38 H 0.025 0.975 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.482 -16.300 0.573 16.498 hybrid contribution 0.173 1.527 0.126 1.541 sum 2.654 -14.774 0.699 15.026 Atomic orbital electron populations 1.70111 1.07975 1.27821 1.51577 1.26012 0.95713 1.03518 0.94579 0.85481 0.78245 0.77922 0.79296 1.19012 1.20945 1.19041 1.21619 0.93617 0.92272 1.50738 0.91894 1.19516 0.95030 0.94436 0.94427 1.22148 0.95782 0.86516 1.01196 1.62350 1.27006 1.32288 1.02028 1.22108 0.95681 0.97581 0.92122 1.21783 0.99023 0.92876 1.01558 1.21458 0.97968 0.97699 0.97359 1.21591 1.01489 0.97016 0.94237 1.22323 0.99143 0.97822 0.98233 1.21592 0.95431 0.93248 0.91127 0.89975 1.58802 1.49981 1.26590 1.03234 1.21891 0.94001 0.96574 0.93357 0.92835 0.99540 0.99368 0.91810 0.91564 0.91827 0.97300 0.90960 0.91580 0.91562 0.91913 0.91430 0.91920 0.91463 0.92050 0.83325 0.84477 0.97482 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.38 13.29 21.45 0.28 -58.09 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.00 0.23 4.38 29.85 0.13 0.36 16 10 C 0.07 3.02 5.15 86.30 0.44 3.47 16 11 N -0.51 -18.19 2.14 -897.45 -1.92 -20.11 16 12 C 0.05 1.83 4.37 86.23 0.38 2.20 16 13 C -0.11 -2.95 5.44 30.44 0.17 -2.78 16 14 C -0.11 -2.42 5.48 30.55 0.17 -2.26 16 15 C -0.11 -2.09 5.64 30.64 0.17 -1.92 16 16 C -0.14 -3.08 5.23 30.55 0.16 -2.92 16 17 C 0.10 2.61 2.78 44.77 0.12 2.74 16 18 H 0.08 2.25 4.71 -2.39 -0.01 2.24 16 19 N -0.85 -20.46 9.09 -169.29 -1.54 -21.99 16 20 C 0.07 2.52 3.63 86.23 0.31 2.83 16 21 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 22 H -0.01 -0.81 7.06 -2.38 -0.02 -0.83 16 23 H -0.01 -0.71 6.86 -2.39 -0.02 -0.73 16 24 H 0.06 2.65 8.10 -2.39 -0.02 2.63 16 25 H 0.07 2.73 7.92 -2.39 -0.02 2.71 16 26 H 0.06 2.21 7.77 -2.39 -0.02 2.19 16 27 H 0.01 0.35 7.13 -2.39 -0.02 0.33 16 28 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.07 1.69 4.70 -2.38 -0.01 1.67 16 30 H 0.07 1.76 6.58 -2.39 -0.02 1.74 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.15 7.50 -2.39 -0.02 1.13 16 34 H 0.07 1.81 6.58 -2.39 -0.02 1.80 16 35 H 0.06 1.19 7.83 -2.39 -0.02 1.17 16 36 H 0.35 6.52 8.99 -89.69 -0.81 5.71 16 37 H 0.34 7.76 8.89 -89.70 -0.80 6.97 16 38 H 0.01 0.29 7.08 -2.39 -0.02 0.28 16 39 H 0.06 2.09 7.77 -2.39 -0.02 2.08 16 Total: -1.00 -64.60 287.99 1.03 -63.57 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.57 Total: 18.78 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 2.75 Total: -29.05 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -3.18 Total: -100.20 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.60 1.03 -63.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709003651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.086 kcal (2) G-P(sol) polarization free energy of solvation -64.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds