Wall clock time and date at job start Mon Mar 30 2020 02:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46891 * 2 1 4 4 C 1.53001 * 109.46830 * 240.00051 * 2 1 3 5 5 C 1.50700 * 109.46901 * 174.99991 * 4 2 1 6 6 H 1.07997 * 120.00243 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99899 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00072 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99855 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46962 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46994 * 119.99864 * 9 7 5 12 12 H 1.48493 * 109.47168 * 239.99766 * 9 7 5 13 13 O 1.42898 * 109.47230 * 120.00362 * 2 1 3 14 14 C 1.42901 * 113.99760 * 269.99909 * 13 2 1 15 15 C 1.53002 * 109.46914 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.47628 * 295.00256 * 15 14 13 17 17 C 1.52997 * 109.47317 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47060 * 59.99960 * 17 16 15 19 19 C 1.53002 * 109.47233 * 299.99657 * 18 17 16 20 20 C 1.52997 * 109.46817 * 60.00194 * 19 18 17 21 21 H 1.09001 * 109.46632 * 299.99485 * 1 2 3 22 22 H 1.08993 * 109.47328 * 60.00080 * 1 2 3 23 23 H 1.09006 * 109.46961 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47612 * 294.99519 * 4 2 1 25 25 H 1.08998 * 109.47295 * 55.00565 * 4 2 1 26 26 H 0.97006 * 119.99942 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47465 * 60.00144 * 14 13 2 28 28 H 1.08998 * 109.47172 * 299.99886 * 14 13 2 29 29 H 1.09002 * 109.47097 * 55.00053 * 15 14 13 30 30 H 1.08996 * 109.46929 * 59.99225 * 16 15 14 31 31 H 1.09002 * 109.46716 * 300.00030 * 16 15 14 32 32 H 1.09002 * 109.47153 * 299.99641 * 17 16 15 33 33 H 1.09001 * 109.46832 * 179.97438 * 17 16 15 34 34 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 35 35 H 1.09004 * 109.46724 * 180.02562 * 18 17 16 36 36 H 1.08993 * 109.47662 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47075 * 300.00932 * 19 18 17 38 38 H 1.09002 * 109.47153 * 60.00231 * 20 19 18 39 39 H 1.09001 * 109.47289 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1926 -2.3584 8 7 3.5763 -1.8369 -3.3001 9 14 6.0920 -1.0602 -2.4375 10 1 6.5837 -0.2909 -1.2663 11 1 6.6862 -2.4211 -2.4201 12 1 6.4860 -0.3640 -3.6885 13 8 2.0064 -0.6737 1.1667 14 6 2.2002 0.1829 2.2940 15 6 2.7080 -0.6409 3.4791 16 6 1.6285 -1.6367 3.9081 17 6 2.1361 -2.4600 5.0936 18 6 2.4615 -1.5261 6.2610 19 6 3.5411 -0.5304 5.8321 20 6 3.0335 0.2929 4.6466 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.7517 -1.7715 -1.2057 25 1 1.6054 -0.2617 -2.1370 26 1 4.0606 -2.2431 -4.0360 27 1 1.2539 0.6546 2.5589 28 1 2.9320 0.9512 2.0450 29 1 3.6068 -1.1835 3.1859 30 1 1.3963 -2.3016 3.0762 31 1 0.7297 -1.0941 4.2013 32 1 3.0351 -3.0025 4.8008 33 1 1.3668 -3.1690 5.3994 34 1 1.5627 -0.9836 6.5538 35 1 2.8236 -2.1127 7.1054 36 1 3.7733 0.1346 6.6638 37 1 4.4400 -1.0729 5.5392 38 1 2.1345 0.8354 4.9394 39 1 3.8027 1.0020 4.3407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710008408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:13 Heat of formation + Delta-G solvation = -94.347713 kcal Electronic energy + Delta-G solvation = -16161.500180 eV Core-core repulsion = 13681.265660 eV Total energy + Delta-G solvation = -2480.234520 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.77863 -37.07991 -33.30812 -31.92797 -30.70560 -30.36379 -27.31525 -25.24827 -23.06856 -22.46365 -21.02442 -20.06391 -19.50267 -16.27951 -15.95548 -15.43613 -14.74981 -14.54248 -14.12706 -13.93502 -13.74022 -13.16692 -12.39294 -12.24852 -12.09821 -12.07601 -11.79441 -11.54816 -11.23876 -11.05414 -11.04143 -10.90806 -10.67547 -10.52611 -10.32782 -10.03164 -9.93672 -9.82041 -9.31361 -9.07419 -8.51415 -8.29923 -5.92671 -3.92433 3.35730 3.42850 3.47636 4.38799 4.52743 4.77565 4.85263 4.95768 5.26514 5.37650 5.44406 5.54817 5.59812 5.60972 5.63563 5.71500 5.82474 5.84823 5.99575 6.03446 6.07185 6.08133 6.16712 6.19849 6.27878 6.28856 6.40600 6.41742 6.61329 6.67547 6.80007 7.00103 7.60358 7.72995 8.05533 8.27750 8.51172 9.11938 9.69609 11.19165 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026760 B = 0.006512 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.091063 B = 4298.865062 C = 4882.132951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.091 3.909 3 H 0.044 0.956 4 C 0.023 3.977 5 C -0.504 4.504 6 H 0.055 0.945 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 O -0.366 6.366 14 C 0.067 3.933 15 C -0.085 4.085 16 C -0.109 4.109 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.112 4.112 21 H 0.039 0.961 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.025 0.975 25 H 0.029 0.971 26 H 0.259 0.741 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.451 2.956 16.281 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.034 3.966 3 H 0.062 0.938 4 C -0.014 4.014 5 C -0.542 4.542 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 O -0.285 6.285 14 C -0.010 4.010 15 C -0.104 4.104 16 C -0.146 4.146 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.150 4.150 21 H 0.058 0.942 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.389 2.664 16.124 16.690 hybrid contribution 0.952 0.334 -0.181 1.025 sum -2.437 2.997 15.943 16.404 Atomic orbital electron populations 1.22324 0.98330 1.01803 1.00380 1.22359 0.90870 0.96040 0.87343 0.93764 1.19244 0.96250 0.96341 0.89521 1.21180 0.91962 1.33670 1.07385 0.92698 1.24995 0.98239 0.95545 0.95848 1.69971 1.35264 1.36499 1.12205 0.86558 0.86115 0.77728 0.77738 1.19827 1.21075 1.21158 1.87989 1.86640 1.34408 1.19422 1.22403 0.98059 0.93074 0.87481 1.21118 0.99603 0.96467 0.93170 1.21498 0.97461 0.97958 0.97728 1.21555 1.01049 0.97738 0.95450 1.21540 0.98798 0.97546 0.97732 1.21506 0.98562 0.97868 0.97565 1.21514 1.00898 0.97704 0.94885 0.94211 0.92308 0.92422 0.95666 0.95322 0.93181 0.94823 0.94123 0.90261 0.90825 0.92679 0.91966 0.92382 0.92291 0.92511 0.92339 0.91922 0.92170 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.53 37.16 0.35 -2.74 16 2 C 0.09 1.99 2.67 -26.73 -0.07 1.92 16 3 H 0.04 0.95 7.79 -51.93 -0.40 0.54 16 4 C 0.02 0.62 4.68 -27.88 -0.13 0.49 16 5 C -0.50 -14.66 8.88 -34.44 -0.31 -14.97 16 6 H 0.05 1.58 7.74 -52.49 -0.41 1.18 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 O -0.37 -7.85 9.28 -35.23 -0.33 -8.18 16 14 C 0.07 1.15 5.13 37.16 0.19 1.34 16 15 C -0.09 -1.25 2.43 -90.62 -0.22 -1.47 16 16 C -0.11 -1.50 5.10 -26.73 -0.14 -1.63 16 17 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 18 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 19 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 20 C -0.11 -1.33 5.20 -26.73 -0.14 -1.47 16 21 H 0.04 0.63 7.87 -51.93 -0.41 0.22 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.03 0.52 7.87 -51.93 -0.41 0.11 16 28 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.16 7.82 -51.93 -0.41 0.76 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -30.63 309.74 -8.48 -39.11 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -7.51 Total: -4.65 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -1.03 Total: -21.36 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.74 Total: -26.84 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.33 Total: -8.18 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.63 -8.48 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710008408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.239 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds