Wall clock time and date at job start Mon Mar 30 2020 02:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46886 * 119.99346 * 2 1 3 5 5 C 1.50706 * 109.47153 * 184.99546 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 O 1.42898 * 109.46999 * 239.99543 * 2 1 3 14 14 C 1.42896 * 114.00038 * 90.00045 * 13 2 1 15 15 C 1.52995 * 109.47061 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.47756 * 295.00457 * 15 14 13 17 17 C 1.52996 * 109.47239 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47314 * 59.99751 * 17 16 15 19 19 C 1.52997 * 109.47182 * 299.99907 * 18 17 16 20 20 C 1.52996 * 109.46921 * 59.99852 * 19 18 17 21 21 H 1.09001 * 109.46923 * 60.00438 * 1 2 3 22 22 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46878 * 300.00364 * 1 2 3 24 24 H 1.09004 * 109.47178 * 65.00336 * 4 2 1 25 25 H 1.08993 * 109.47411 * 305.00018 * 4 2 1 26 26 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 27 27 H 1.08998 * 109.47426 * 300.00266 * 14 13 2 28 28 H 1.09000 * 109.46884 * 59.99999 * 14 13 2 29 29 H 1.09004 * 109.47487 * 55.00489 * 15 14 13 30 30 H 1.09006 * 109.46388 * 300.00080 * 16 15 14 31 31 H 1.08996 * 109.46957 * 59.99218 * 16 15 14 32 32 H 1.09000 * 109.47035 * 299.99457 * 17 16 15 33 33 H 1.09004 * 109.46955 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.46786 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47310 * 59.99874 * 18 17 16 36 36 H 1.09000 * 109.46971 * 300.00174 * 19 18 17 37 37 H 1.08996 * 109.47106 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.46955 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47035 * 60.00362 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0856 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5760 -1.8334 3.3023 9 14 6.0921 -1.0611 2.4369 10 1 6.5866 -1.7559 3.6526 11 1 6.6848 -1.6922 1.2304 12 1 6.4847 0.3700 2.4905 13 8 2.0063 -0.6737 -1.1667 14 6 2.2000 0.1827 -2.2941 15 6 2.7090 -0.6409 -3.4787 16 6 4.0950 -1.2008 -3.1528 17 6 4.6042 -2.0239 -4.3377 18 6 4.6931 -1.1319 -5.5777 19 6 3.3070 -0.5720 -5.9036 20 6 2.7979 0.2510 -4.7187 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.7516 -1.7714 1.2058 25 1 1.6053 -0.2616 2.1370 26 1 2.6093 -1.9019 3.2614 27 1 1.2538 0.6545 -2.5589 28 1 2.9319 0.9511 -2.0450 29 1 2.0208 -1.4640 -3.6715 30 1 4.7832 -0.3777 -2.9601 31 1 4.0318 -1.8358 -2.2692 32 1 3.9161 -2.8469 -4.5308 33 1 5.5918 -2.4224 -4.1057 34 1 5.0562 -1.7182 -6.4217 35 1 5.3811 -0.3088 -5.3846 36 1 2.6190 -1.3951 -6.0967 37 1 3.3703 0.0631 -6.7872 38 1 1.8102 0.6495 -4.9507 39 1 3.4860 1.0741 -4.5256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710008409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:15 Heat of formation + Delta-G solvation = -98.010787 kcal Electronic energy + Delta-G solvation = -16291.092585 eV Core-core repulsion = 13810.699222 eV Total energy + Delta-G solvation = -2480.393362 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.78370 -37.15876 -33.58912 -31.96644 -30.68578 -30.31878 -26.98590 -25.23046 -22.91961 -22.43363 -21.03322 -20.34641 -19.49623 -16.72479 -16.00104 -15.36995 -15.04781 -14.16004 -13.95968 -13.71209 -13.67045 -13.15849 -12.92530 -12.49667 -12.08699 -12.02774 -11.70892 -11.44551 -11.36034 -11.12172 -11.01317 -10.74305 -10.71201 -10.52314 -10.23119 -10.05394 -9.90681 -9.80193 -9.50512 -8.83302 -8.36119 -8.25276 -6.26800 -3.93339 3.48175 3.51160 3.69328 4.31982 4.61822 4.78692 4.87174 4.97348 5.26849 5.39207 5.50519 5.54386 5.61639 5.62072 5.65333 5.72027 5.74642 5.83523 5.91795 5.97172 6.00476 6.08662 6.11337 6.23827 6.27552 6.30283 6.33321 6.45641 6.66739 6.68171 6.77806 6.84334 7.32701 7.44636 8.15036 8.32353 8.56205 8.97803 9.76297 11.13979 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.007630 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.938454 B = 3668.711400 C = 4623.422748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 H 0.046 0.954 4 C 0.010 3.990 5 C -0.585 4.585 6 H 0.048 0.952 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 O -0.365 6.365 14 C 0.067 3.933 15 C -0.082 4.082 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.113 4.113 21 H 0.041 0.959 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.016 0.984 25 H 0.018 0.982 26 H 0.267 0.733 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 3.553 -16.127 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.041 3.959 3 H 0.064 0.936 4 C -0.026 4.026 5 C -0.623 4.623 6 H 0.066 0.934 7 C -0.191 4.191 8 N -0.555 5.555 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.216 1.216 13 O -0.284 6.284 14 C -0.011 4.011 15 C -0.100 4.100 16 C -0.150 4.150 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.150 4.150 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.030 2.933 -15.224 15.504 hybrid contribution -1.489 0.788 -0.930 1.924 sum -1.519 3.721 -16.154 16.647 Atomic orbital electron populations 1.22346 0.98300 1.01812 1.00546 1.22166 0.90720 0.95959 0.87060 0.93611 1.19353 0.97375 0.95665 0.90250 1.21932 0.91583 1.38002 1.10787 0.93368 1.25786 1.06749 0.93728 0.92805 1.70783 1.10209 1.40439 1.34038 0.83581 0.74683 0.76141 0.76076 1.20851 1.21436 1.21613 1.87979 1.86595 1.34394 1.19437 1.22424 0.97932 0.93184 0.87520 1.21088 0.97864 0.98083 0.92976 1.21521 0.95224 0.99976 0.98251 1.21552 1.00993 0.98149 0.95017 1.21551 0.96965 0.99378 0.97817 1.21490 0.97023 0.99439 0.97381 1.21521 1.00852 0.98145 0.94510 0.93957 0.92449 0.92326 0.96612 0.96347 0.92259 0.94837 0.94047 0.90872 0.92334 0.90186 0.92237 0.92176 0.92527 0.92160 0.92115 0.92360 0.92255 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.53 37.16 0.35 -2.78 16 2 C 0.10 2.16 2.67 -26.73 -0.07 2.09 16 3 H 0.05 1.00 7.79 -51.93 -0.40 0.59 16 4 C 0.01 0.28 4.00 -27.88 -0.11 0.17 16 5 C -0.58 -17.13 8.88 -34.44 -0.31 -17.44 16 6 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.81 13.65 55.43 0.76 -28.06 16 9 Si 1.07 26.12 29.90 -169.99 -5.08 21.03 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 13 O -0.37 -7.92 9.28 -35.23 -0.33 -8.25 16 14 C 0.07 1.15 5.13 37.15 0.19 1.34 16 15 C -0.08 -1.21 2.43 -90.62 -0.22 -1.43 16 16 C -0.11 -1.77 5.10 -26.73 -0.14 -1.90 16 17 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 18 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 19 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 20 C -0.11 -1.33 5.20 -26.73 -0.14 -1.47 16 21 H 0.04 0.67 7.87 -51.93 -0.41 0.26 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 25 H 0.02 0.50 8.00 -51.93 -0.42 0.08 16 26 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 27 H 0.03 0.52 7.87 -51.93 -0.41 0.11 16 28 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.52 7.82 -51.93 -0.41 1.11 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -31.25 308.42 -8.47 -39.72 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.45 Total: -3.41 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -1.01 Total: -25.68 kcal Atomic # 7 Polarization: -28.81 SS G_CDS: 0.76 Total: -28.06 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.33 Total: -8.25 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -5.08 Total: 21.03 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.25 -8.47 -39.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710008409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.294 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds