Wall clock time and date at job start Mon Mar 30 2020 02:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46886 * 119.99346 * 2 1 3 5 5 C 1.50706 * 109.47153 * 184.99546 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 O 1.42898 * 109.46999 * 239.99543 * 2 1 3 14 14 C 1.42896 * 114.00038 * 90.00045 * 13 2 1 15 15 C 1.52995 * 109.47061 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.47756 * 295.00457 * 15 14 13 17 17 C 1.52996 * 109.47239 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47314 * 59.99751 * 17 16 15 19 19 C 1.52997 * 109.47182 * 299.99907 * 18 17 16 20 20 C 1.52996 * 109.46921 * 59.99852 * 19 18 17 21 21 H 1.09001 * 109.46923 * 60.00438 * 1 2 3 22 22 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46878 * 300.00364 * 1 2 3 24 24 H 1.09004 * 109.47178 * 65.00336 * 4 2 1 25 25 H 1.08993 * 109.47411 * 305.00018 * 4 2 1 26 26 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 27 27 H 1.08998 * 109.47426 * 300.00266 * 14 13 2 28 28 H 1.09000 * 109.46884 * 59.99999 * 14 13 2 29 29 H 1.09004 * 109.47487 * 55.00489 * 15 14 13 30 30 H 1.09006 * 109.46388 * 300.00080 * 16 15 14 31 31 H 1.08996 * 109.46957 * 59.99218 * 16 15 14 32 32 H 1.09000 * 109.47035 * 299.99457 * 17 16 15 33 33 H 1.09004 * 109.46955 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.46786 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47310 * 59.99874 * 18 17 16 36 36 H 1.09000 * 109.46971 * 300.00174 * 19 18 17 37 37 H 1.08996 * 109.47106 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.46955 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47035 * 60.00362 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0856 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5760 -1.8334 3.3023 9 14 6.0921 -1.0611 2.4369 10 1 6.5866 -1.7559 3.6526 11 1 6.6848 -1.6922 1.2304 12 1 6.4847 0.3700 2.4905 13 8 2.0063 -0.6737 -1.1667 14 6 2.2000 0.1827 -2.2941 15 6 2.7090 -0.6409 -3.4787 16 6 4.0950 -1.2008 -3.1528 17 6 4.6042 -2.0239 -4.3377 18 6 4.6931 -1.1319 -5.5777 19 6 3.3070 -0.5720 -5.9036 20 6 2.7979 0.2510 -4.7187 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.7516 -1.7714 1.2058 25 1 1.6053 -0.2616 2.1370 26 1 2.6093 -1.9019 3.2614 27 1 1.2538 0.6545 -2.5589 28 1 2.9319 0.9511 -2.0450 29 1 2.0208 -1.4640 -3.6715 30 1 4.7832 -0.3777 -2.9601 31 1 4.0318 -1.8358 -2.2692 32 1 3.9161 -2.8469 -4.5308 33 1 5.5918 -2.4224 -4.1057 34 1 5.0562 -1.7182 -6.4217 35 1 5.3811 -0.3088 -5.3846 36 1 2.6190 -1.3951 -6.0967 37 1 3.3703 0.0631 -6.7872 38 1 1.8102 0.6495 -4.9507 39 1 3.4860 1.0741 -4.5256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710008409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:15 Heat of formation + Delta-G solvation = -115.310940 kcal Electronic energy + Delta-G solvation = -16291.842776 eV Core-core repulsion = 13810.699222 eV Total energy + Delta-G solvation = -2481.143553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03865 -38.63029 -35.65648 -33.54380 -31.95318 -31.54616 -28.96033 -26.52848 -25.05131 -23.47293 -22.18852 -22.07145 -20.59166 -18.96394 -17.62795 -16.54402 -16.45790 -15.67996 -15.36760 -15.19431 -14.99471 -14.72302 -14.44099 -14.09961 -13.48547 -13.24789 -13.09886 -13.05502 -12.93274 -12.75825 -12.52065 -12.22536 -12.01074 -11.95557 -11.85257 -11.41043 -11.32884 -10.95997 -10.93296 -10.77770 -10.55204 -10.22472 -8.67353 -6.34866 1.48616 1.57883 1.77183 2.55639 2.84549 3.18799 3.73252 3.85164 3.90955 4.07816 4.18602 4.30323 4.35532 4.42577 4.44052 4.50685 4.55285 4.63086 4.68397 4.72490 4.81013 4.82606 4.99828 5.04297 5.09206 5.16820 5.20687 5.25073 5.27313 5.30874 5.34899 5.40782 5.52547 5.59227 6.00099 6.18605 6.51014 6.63475 7.43813 8.73823 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.007630 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.938454 B = 3668.711400 C = 4623.422748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.102 3.898 3 H 0.046 0.954 4 C 0.010 3.990 5 C -0.598 4.598 6 H 0.044 0.956 7 C -0.041 4.041 8 N -0.940 5.940 9 Si 1.113 2.887 10 H -0.281 1.281 11 H -0.273 1.273 12 H -0.267 1.267 13 O -0.393 6.393 14 C 0.061 3.939 15 C -0.078 4.078 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.114 4.114 20 C -0.107 4.107 21 H 0.072 0.928 22 H 0.051 0.949 23 H 0.068 0.932 24 H -0.012 1.012 25 H 0.008 0.992 26 H 0.254 0.746 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 4.651 -18.429 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.064 0.936 4 C -0.027 4.027 5 C -0.635 4.635 6 H 0.062 0.938 7 C -0.238 4.238 8 N -0.578 5.578 9 Si 0.934 3.066 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.192 1.192 13 O -0.312 6.312 14 C -0.016 4.016 15 C -0.096 4.096 16 C -0.150 4.150 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.144 4.144 21 H 0.090 0.910 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.006 0.994 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.282 4.046 -17.547 18.010 hybrid contribution -1.619 0.436 -0.220 1.691 sum -1.336 4.481 -17.767 18.372 Atomic orbital electron populations 1.22223 0.95040 1.02135 1.02551 1.21966 0.93218 0.94805 0.85548 0.93562 1.19293 0.96298 0.94487 0.92649 1.22278 0.93162 1.37595 1.10512 0.93802 1.27356 1.11253 0.92815 0.92332 1.70917 1.09569 1.42148 1.35212 0.82999 0.69374 0.77567 0.76635 1.20588 1.19893 1.19196 1.87937 1.86970 1.35967 1.20364 1.22699 0.99047 0.93064 0.86744 1.21110 0.96692 0.98326 0.93499 1.21471 0.96234 0.99396 0.97880 1.21532 1.00791 0.98217 0.94916 1.21543 0.97611 0.99176 0.97056 1.21503 0.96477 0.99702 0.97405 1.21504 1.02010 0.97670 0.93265 0.90954 0.92980 0.91275 0.99393 0.97416 0.93663 0.92472 0.94751 0.91312 0.93005 0.94660 0.92136 0.92200 0.90638 0.92048 0.91802 0.90079 0.90677 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.68 9.53 71.98 0.69 -5.00 16 2 C 0.10 4.52 2.67 30.59 0.08 4.60 16 3 H 0.05 2.01 7.79 -2.39 -0.02 1.99 16 4 C 0.01 0.53 4.00 29.85 0.12 0.65 16 5 C -0.60 -35.88 8.88 25.60 0.23 -35.66 16 6 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 7 C -0.04 -2.48 5.46 84.65 0.46 -2.02 16 8 N -0.94 -60.50 13.65 21.45 0.29 -60.21 16 9 Si 1.11 52.63 29.90 68.60 2.05 54.68 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 O -0.39 -17.22 9.28 -148.98 -1.38 -18.60 16 14 C 0.06 2.05 5.13 71.98 0.37 2.41 16 15 C -0.08 -2.23 2.43 -10.79 -0.03 -2.25 16 16 C -0.11 -3.56 5.10 30.59 0.16 -3.41 16 17 C -0.12 -2.90 5.92 30.59 0.18 -2.72 16 18 C -0.12 -2.22 5.92 30.59 0.18 -2.04 16 19 C -0.11 -1.98 5.92 30.59 0.18 -1.80 16 20 C -0.11 -2.23 5.20 30.59 0.16 -2.07 16 21 H 0.07 2.10 7.87 -2.39 -0.02 2.08 16 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 24 H -0.01 -0.73 8.01 -2.39 -0.02 -0.75 16 25 H 0.01 0.43 8.00 -2.39 -0.02 0.42 16 26 H 0.25 16.53 7.22 -92.71 -0.67 15.86 16 27 H 0.06 1.64 7.87 -2.39 -0.02 1.62 16 28 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 29 H 0.07 2.02 8.14 -2.38 -0.02 2.01 16 30 H 0.05 1.66 8.14 -2.38 -0.02 1.65 16 31 H 0.03 1.40 7.82 -2.39 -0.02 1.38 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -68.89 308.42 4.80 -64.09 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.06 Total: 9.34 kcal Atomic # 6 Polarization: -52.07 SS G_CDS: 2.78 Total: -49.29 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.29 Total: -60.21 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -1.38 Total: -18.60 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 2.05 Total: 54.68 kcal Total: -68.89 4.80 -64.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710008409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.225 kcal (2) G-P(sol) polarization free energy of solvation -68.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds