Wall clock time and date at job start Mon Mar 30 2020 03:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47273 * 2 1 4 4 C 1.52999 * 109.47228 * 239.99762 * 2 1 3 5 5 N 1.46902 * 109.47220 * 119.99922 * 2 1 3 6 6 C 1.47447 * 110.99786 * 300.50141 * 5 2 1 7 7 C 1.54323 * 107.23089 * 123.25835 * 6 5 2 8 8 C 1.55133 * 103.01959 * 22.28335 * 7 6 5 9 9 H 1.08993 * 110.99287 * 82.44067 * 8 7 6 10 10 C 1.53005 * 110.98959 * 206.25752 * 8 7 6 11 11 N 1.46500 * 109.46775 * 287.26731 * 10 8 7 12 12 C 1.36938 * 119.99794 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00251 * 359.97438 * 12 11 10 14 14 C 1.38811 * 120.00032 * 179.97438 * 12 11 10 15 15 N 1.31618 * 120.00151 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00122 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46895 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46996 * 119.99976 * 16 14 12 19 19 H 1.48497 * 109.47213 * 240.00168 * 16 14 12 20 20 C 1.47843 * 110.99964 * 61.34549 * 5 2 1 21 21 H 1.08997 * 109.47262 * 293.79653 * 1 2 3 22 22 H 1.09005 * 109.47191 * 53.79632 * 1 2 3 23 23 H 1.09005 * 109.47056 * 173.79859 * 1 2 3 24 24 H 1.08995 * 109.47686 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47158 * 299.99792 * 3 2 1 26 26 H 1.09000 * 109.47239 * 59.99744 * 3 2 1 27 27 H 1.09002 * 109.47350 * 299.99789 * 4 2 1 28 28 H 1.09001 * 109.47026 * 60.00316 * 4 2 1 29 29 H 1.09005 * 109.46953 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.88802 * 242.65995 * 6 5 2 31 31 H 1.09005 * 109.88658 * 3.69010 * 6 5 2 32 32 H 1.08999 * 110.70300 * 140.66937 * 7 6 5 33 33 H 1.09003 * 110.70241 * 263.72851 * 7 6 5 34 34 H 1.08993 * 109.47012 * 47.26609 * 10 8 7 35 35 H 1.09005 * 109.47176 * 167.26689 * 10 8 7 36 36 H 0.97000 * 120.00420 * 0.02562 * 11 10 8 37 37 H 0.96995 * 120.00669 * 179.97438 * 15 14 12 38 38 H 1.09001 * 110.37259 * 332.46198 * 20 5 2 39 39 H 1.08991 * 110.37894 * 94.80934 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 1.5370 -0.0308 2.4256 7 6 0.7764 -1.0918 3.2485 8 6 1.3562 -2.4287 2.7162 9 1 2.3014 -2.6661 3.2042 10 6 0.3511 -3.5693 2.8888 11 7 0.2615 -3.9310 4.3056 12 6 -0.5806 -4.9346 4.7041 13 1 -1.1790 -5.4592 3.9739 14 6 -0.6651 -5.2777 6.0464 15 7 0.0645 -4.6388 6.9362 16 14 -1.8144 -6.6463 6.5902 17 1 -2.5174 -7.2020 5.4060 18 1 -1.0282 -7.7209 7.2478 19 1 -2.8108 -6.1045 7.5487 20 6 1.5723 -2.1015 1.2175 21 1 -0.3633 0.4146 0.9403 22 1 -0.3634 0.6070 -0.8293 23 1 -0.3633 -1.0217 -0.1110 24 1 3.1299 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6767 -1.7490 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7209 -1.2494 30 1 2.3825 0.3478 2.9999 31 1 0.8683 0.7898 2.1654 32 1 0.9855 -0.9773 4.3121 33 1 -0.2953 -1.0309 3.0590 34 1 -0.6278 -3.2478 2.5332 35 1 0.6807 -4.4343 2.3131 36 1 0.7987 -3.4596 4.9614 37 1 0.0053 -4.8782 7.8743 38 1 0.6378 -2.2100 0.6670 39 1 2.3402 -2.7490 0.7947 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710335507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:45 Heat of formation + Delta-G solvation = 7.208171 kcal Electronic energy + Delta-G solvation = -16357.937123 eV Core-core repulsion = 13914.399148 eV Total energy + Delta-G solvation = -2443.537975 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.84139 -35.89531 -33.83819 -31.30728 -29.36641 -28.88634 -27.37109 -26.94870 -24.70776 -22.23598 -21.73553 -19.79347 -18.51452 -17.06829 -16.04013 -15.68518 -14.60795 -14.40973 -14.14666 -13.65385 -13.29539 -13.10833 -12.93004 -12.59475 -12.34486 -12.16886 -11.99956 -11.69190 -11.40018 -11.23515 -11.08034 -10.85643 -10.82467 -10.62376 -10.47994 -10.25826 -10.11867 -9.93061 -9.65079 -8.84404 -8.11110 -6.87916 -5.73607 -3.01788 3.44926 3.50367 3.52759 4.03892 4.60676 4.72243 4.87006 4.98159 5.10930 5.14243 5.32302 5.48769 5.51198 5.55898 5.60831 5.67975 5.72461 5.77048 5.80284 5.82559 5.88157 6.07414 6.13006 6.16508 6.21507 6.24029 6.29970 6.37816 6.50959 6.55480 6.81868 6.97163 7.16277 7.30803 7.72965 8.45552 9.56672 10.15708 10.50721 11.49537 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.058963 B = 0.005204 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.759814 B = 5379.267149 C = 5538.442588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.095 3.905 3 C -0.138 4.138 4 C -0.138 4.138 5 N -0.519 5.519 6 C 0.038 3.962 7 C -0.129 4.129 8 C -0.101 4.101 9 H 0.082 0.918 10 C 0.164 3.836 11 N -0.731 5.731 12 C -0.238 4.238 13 H 0.070 0.930 14 C -0.015 4.015 15 N -0.934 5.934 16 Si 0.906 3.094 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.292 1.292 20 C 0.046 3.954 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.016 0.984 35 H 0.018 0.982 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.052 0.948 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 11.043 -14.414 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.005 3.995 3 C -0.195 4.195 4 C -0.196 4.196 5 N -0.243 5.243 6 C -0.090 4.090 7 C -0.168 4.168 8 C -0.120 4.120 9 H 0.100 0.900 10 C 0.036 3.964 11 N -0.375 5.375 12 C -0.369 4.369 13 H 0.088 0.912 14 C -0.210 4.210 15 N -0.583 5.583 16 Si 0.737 3.263 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.081 4.081 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.645 10.941 -14.457 18.493 hybrid contribution -1.394 -0.636 0.657 1.667 sum 2.251 10.305 -13.800 17.369 Atomic orbital electron populations 1.22545 0.97072 1.02355 1.02194 1.21185 0.92410 0.94525 0.91388 1.21877 1.01749 0.94516 1.01391 1.21854 1.01722 1.00204 0.95774 1.63839 1.57118 1.02152 1.01153 1.22891 0.98248 0.96843 0.90982 1.22759 0.99481 0.94134 1.00411 1.22472 0.99945 0.95276 0.94314 0.89977 1.20575 0.94643 0.93268 0.87910 1.42348 1.51171 1.42253 1.01735 1.19289 1.16160 1.09621 0.91832 0.91220 1.24731 1.00343 1.00062 0.95912 1.69669 1.43620 1.43821 1.01164 0.86126 0.80187 0.81662 0.78297 1.20589 1.21864 1.21901 1.23063 0.99117 0.88993 0.96958 0.92108 0.92438 0.92061 0.91948 0.92588 0.92596 0.92478 0.92601 0.91944 0.90989 0.92606 0.90639 0.91650 0.96597 0.96394 0.78250 0.93599 0.92993 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 7.88 37.15 0.29 -1.73 16 2 C 0.09 1.06 0.67 -131.60 -0.09 0.97 16 3 C -0.14 -1.36 8.35 37.16 0.31 -1.05 16 4 C -0.14 -1.40 8.35 37.16 0.31 -1.09 16 5 N -0.52 -6.90 5.00 -215.64 -1.08 -7.98 16 6 C 0.04 0.51 5.50 -2.83 -0.02 0.50 16 7 C -0.13 -2.08 6.35 -24.91 -0.16 -2.23 16 8 C -0.10 -1.72 3.04 -88.48 -0.27 -1.99 16 9 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 10 C 0.16 3.41 5.71 -4.04 -0.02 3.39 16 11 N -0.73 -18.99 5.55 -59.91 -0.33 -19.33 16 12 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 13 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 14 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 15 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 16 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 C 0.05 0.67 4.61 -2.30 -0.01 0.66 16 21 H 0.06 0.71 6.14 -51.93 -0.32 0.39 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.72 6.30 -51.93 -0.33 0.40 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.56 6.53 -51.93 -0.34 0.22 16 27 H 0.06 0.60 7.00 -51.93 -0.36 0.24 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.69 4.79 -51.93 -0.25 0.44 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 34 H 0.02 0.34 7.98 -51.93 -0.41 -0.07 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 37 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.05 0.73 5.38 -51.93 -0.28 0.45 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -30.19 297.70 -7.91 -38.10 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.79 Total: 5.07 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 0.10 Total: -10.08 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.69 Total: -55.29 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.19 -7.91 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710335507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.307 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds