Wall clock time and date at job start Mon Mar 30 2020 03:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47273 * 2 1 4 4 C 1.52999 * 109.47228 * 239.99762 * 2 1 3 5 5 N 1.46902 * 109.47220 * 119.99922 * 2 1 3 6 6 C 1.47447 * 110.99786 * 300.50141 * 5 2 1 7 7 C 1.54323 * 107.23089 * 123.25835 * 6 5 2 8 8 C 1.55133 * 103.01959 * 22.28335 * 7 6 5 9 9 H 1.08993 * 110.99287 * 82.44067 * 8 7 6 10 10 C 1.53005 * 110.98959 * 206.25752 * 8 7 6 11 11 N 1.46500 * 109.46775 * 287.26731 * 10 8 7 12 12 C 1.36938 * 119.99794 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00251 * 359.97438 * 12 11 10 14 14 C 1.38811 * 120.00032 * 179.97438 * 12 11 10 15 15 N 1.31618 * 120.00151 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00122 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46895 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46996 * 119.99976 * 16 14 12 19 19 H 1.48497 * 109.47213 * 240.00168 * 16 14 12 20 20 C 1.47843 * 110.99964 * 61.34549 * 5 2 1 21 21 H 1.08997 * 109.47262 * 293.79653 * 1 2 3 22 22 H 1.09005 * 109.47191 * 53.79632 * 1 2 3 23 23 H 1.09005 * 109.47056 * 173.79859 * 1 2 3 24 24 H 1.08995 * 109.47686 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47158 * 299.99792 * 3 2 1 26 26 H 1.09000 * 109.47239 * 59.99744 * 3 2 1 27 27 H 1.09002 * 109.47350 * 299.99789 * 4 2 1 28 28 H 1.09001 * 109.47026 * 60.00316 * 4 2 1 29 29 H 1.09005 * 109.46953 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.88802 * 242.65995 * 6 5 2 31 31 H 1.09005 * 109.88658 * 3.69010 * 6 5 2 32 32 H 1.08999 * 110.70300 * 140.66937 * 7 6 5 33 33 H 1.09003 * 110.70241 * 263.72851 * 7 6 5 34 34 H 1.08993 * 109.47012 * 47.26609 * 10 8 7 35 35 H 1.09005 * 109.47176 * 167.26689 * 10 8 7 36 36 H 0.97000 * 120.00420 * 0.02562 * 11 10 8 37 37 H 0.96995 * 120.00669 * 179.97438 * 15 14 12 38 38 H 1.09001 * 110.37259 * 332.46198 * 20 5 2 39 39 H 1.08991 * 110.37894 * 94.80934 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 1.5370 -0.0308 2.4256 7 6 0.7764 -1.0918 3.2485 8 6 1.3562 -2.4287 2.7162 9 1 2.3014 -2.6661 3.2042 10 6 0.3511 -3.5693 2.8888 11 7 0.2615 -3.9310 4.3056 12 6 -0.5806 -4.9346 4.7041 13 1 -1.1790 -5.4592 3.9739 14 6 -0.6651 -5.2777 6.0464 15 7 0.0645 -4.6388 6.9362 16 14 -1.8144 -6.6463 6.5902 17 1 -2.5174 -7.2020 5.4060 18 1 -1.0282 -7.7209 7.2478 19 1 -2.8108 -6.1045 7.5487 20 6 1.5723 -2.1015 1.2175 21 1 -0.3633 0.4146 0.9403 22 1 -0.3634 0.6070 -0.8293 23 1 -0.3633 -1.0217 -0.1110 24 1 3.1299 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6767 -1.7490 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7209 -1.2494 30 1 2.3825 0.3478 2.9999 31 1 0.8683 0.7898 2.1654 32 1 0.9855 -0.9773 4.3121 33 1 -0.2953 -1.0309 3.0590 34 1 -0.6278 -3.2478 2.5332 35 1 0.6807 -4.4343 2.3131 36 1 0.7987 -3.4596 4.9614 37 1 0.0053 -4.8782 7.8743 38 1 0.6378 -2.2100 0.6670 39 1 2.3402 -2.7490 0.7947 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710335507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:45 Heat of formation + Delta-G solvation = -12.695498 kcal Electronic energy + Delta-G solvation = -16358.800211 eV Core-core repulsion = 13914.399148 eV Total energy + Delta-G solvation = -2444.401063 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93768 -37.34878 -35.51517 -33.16425 -30.64605 -30.27524 -28.21681 -27.92136 -26.49385 -24.08603 -22.86512 -21.22901 -19.49855 -19.14025 -17.25415 -16.91068 -16.46808 -15.43484 -15.38011 -15.22402 -14.88587 -14.67593 -14.29352 -13.82545 -13.41688 -13.13844 -13.04711 -12.92024 -12.83490 -12.60756 -12.52172 -12.18439 -12.07487 -12.07422 -11.88898 -11.67294 -11.57760 -11.52811 -11.34630 -10.94591 -9.16958 -9.01610 -7.96579 -5.25816 1.46343 1.47468 1.57678 2.54586 3.00451 3.36763 3.60035 3.73804 3.94206 4.03293 4.07621 4.21669 4.32324 4.37864 4.52840 4.63159 4.68729 4.73585 4.75278 4.84728 4.88788 4.92129 4.98585 5.01594 5.03860 5.07293 5.15615 5.26727 5.28420 5.38639 5.43846 5.48669 5.51300 6.07022 6.25269 6.30468 7.31845 8.07361 8.31665 9.27401 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.058963 B = 0.005204 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.759814 B = 5379.267149 C = 5538.442588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 C -0.135 4.135 4 C -0.136 4.136 5 N -0.523 5.523 6 C 0.047 3.953 7 C -0.126 4.126 8 C -0.096 4.096 9 H 0.068 0.932 10 C 0.165 3.835 11 N -0.743 5.743 12 C -0.248 4.248 13 H 0.075 0.925 14 C -0.075 4.075 15 N -0.970 5.970 16 Si 0.975 3.025 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.292 1.292 20 C 0.058 3.942 21 H 0.051 0.949 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.019 0.981 36 H 0.374 0.626 37 H 0.252 0.748 38 H 0.057 0.943 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.849 11.529 -16.035 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.000 4.000 3 C -0.192 4.192 4 C -0.193 4.193 5 N -0.247 5.247 6 C -0.081 4.081 7 C -0.165 4.165 8 C -0.116 4.116 9 H 0.087 0.913 10 C 0.039 3.961 11 N -0.386 5.386 12 C -0.379 4.379 13 H 0.093 0.907 14 C -0.267 4.267 15 N -0.621 5.621 16 Si 0.804 3.196 17 H -0.190 1.190 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.070 4.070 21 H 0.070 0.930 22 H 0.094 0.906 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.206 0.794 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.273 11.434 -16.127 20.038 hybrid contribution -1.271 -0.758 1.098 1.843 sum 2.002 10.676 -15.029 18.543 Atomic orbital electron populations 1.22517 0.96882 1.02003 1.02496 1.21353 0.92589 0.95303 0.90721 1.21859 1.01617 0.93515 1.02227 1.21847 1.01618 0.99954 0.95930 1.63875 1.57312 1.01621 1.01923 1.22811 0.98226 0.96280 0.90742 1.22685 0.99318 0.94616 0.99859 1.22333 0.98162 0.94442 0.96640 0.91344 1.20686 0.95699 0.94574 0.85172 1.42550 1.50646 1.41786 1.03613 1.19690 1.16134 1.09909 0.92212 0.90744 1.25582 1.02298 1.02753 0.96044 1.69826 1.45427 1.45591 1.01239 0.85053 0.78040 0.78541 0.78000 1.19044 1.21878 1.21889 1.22930 0.99597 0.89961 0.94517 0.92967 0.90610 0.93071 0.92153 0.90752 0.92797 0.93099 0.90768 0.92105 0.90745 0.91109 0.92356 0.92393 0.96501 0.96278 0.79442 0.93935 0.92524 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 7.88 71.98 0.57 -3.02 16 2 C 0.09 1.79 0.67 3.52 0.00 1.80 16 3 C -0.13 -2.28 8.35 71.98 0.60 -1.68 16 4 C -0.14 -2.42 8.35 71.98 0.60 -1.81 16 5 N -0.52 -13.08 5.00 -836.15 -4.18 -17.26 16 6 C 0.05 1.21 5.50 86.65 0.48 1.69 16 7 C -0.13 -4.06 6.35 31.77 0.20 -3.85 16 8 C -0.10 -3.30 3.04 -9.41 -0.03 -3.32 16 9 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 10 C 0.17 6.91 5.71 86.38 0.49 7.40 16 11 N -0.74 -39.22 5.55 -343.44 -1.91 -41.13 16 12 C -0.25 -14.24 9.99 84.03 0.84 -13.41 16 13 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 14 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 15 N -0.97 -60.53 13.06 21.65 0.28 -60.24 16 16 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 C 0.06 1.60 4.61 86.78 0.40 2.00 16 21 H 0.05 1.12 6.14 -2.39 -0.01 1.11 16 22 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.05 1.11 6.30 -2.38 -0.02 1.10 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 0.93 6.53 -2.39 -0.02 0.92 16 27 H 0.05 0.96 7.00 -2.39 -0.02 0.94 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 1.63 4.79 -2.38 -0.01 1.62 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 1.93 7.92 -2.39 -0.02 1.91 16 34 H 0.02 0.71 7.98 -2.39 -0.02 0.69 16 35 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.37 20.95 7.67 -92.71 -0.71 20.24 16 37 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.06 1.52 5.38 -2.39 -0.01 1.51 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -63.63 297.70 1.15 -62.49 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.30 Total: 25.41 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 4.62 Total: -18.12 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -5.80 Total: -118.63 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -63.63 1.15 -62.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710335507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.790 kcal (2) G-P(sol) polarization free energy of solvation -63.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds