Wall clock time and date at job start Mon Mar 30 2020 02:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99831 * 2 1 4 4 H 1.48506 * 109.47102 * 240.00703 * 3 2 1 5 5 H 1.48508 * 109.47190 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47253 * 120.00401 * 3 2 1 7 7 C 1.37874 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00310 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.46847 * 110.99918 * 64.55705 * 10 9 7 12 12 C 1.53037 * 109.52045 * 185.84182 * 11 10 9 13 13 C 1.53124 * 109.27666 * 300.81404 * 12 11 10 14 14 C 1.53127 * 109.15856 * 57.65944 * 13 12 11 15 15 C 1.46843 * 110.99766 * 188.76463 * 10 9 7 16 16 H 1.09006 * 109.46456 * 294.17339 * 15 10 9 17 17 C 1.52996 * 109.46475 * 54.14220 * 15 10 9 18 18 C 1.52999 * 109.47337 * 182.17556 * 17 15 10 19 19 C 1.53000 * 109.47338 * 184.06633 * 18 17 15 20 20 N 1.46899 * 109.47452 * 180.02562 * 19 18 17 21 21 H 0.96998 * 120.00147 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46982 * 300.00186 * 9 7 2 23 23 H 1.09001 * 109.46987 * 60.00094 * 9 7 2 24 24 H 1.09003 * 109.46253 * 305.84777 * 11 10 9 25 25 H 1.08995 * 109.46510 * 65.83369 * 11 10 9 26 26 H 1.08994 * 109.50905 * 60.75625 * 12 11 10 27 27 H 1.08998 * 109.50408 * 180.84325 * 12 11 10 28 28 H 1.08997 * 109.52586 * 177.55958 * 13 12 11 29 29 H 1.09002 * 109.52726 * 297.69047 * 13 12 11 30 30 H 1.08994 * 109.50036 * 62.28089 * 14 13 12 31 31 H 1.08990 * 109.50185 * 182.36489 * 14 13 12 32 32 H 1.08999 * 109.47554 * 302.17691 * 17 15 10 33 33 H 1.09007 * 109.46810 * 62.17831 * 17 15 10 34 34 H 1.08993 * 109.47393 * 304.07002 * 18 17 15 35 35 H 1.09004 * 109.46773 * 64.07436 * 18 17 15 36 36 H 1.09006 * 109.47465 * 300.00505 * 19 18 17 37 37 H 1.09003 * 109.47092 * 60.00146 * 19 18 17 38 38 H 1.00899 * 111.00226 * 180.02562 * 20 19 18 39 39 H 1.00903 * 111.00057 * 303.95814 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.9954 -3.6329 1.2374 12 6 4.0738 -4.7145 1.1411 13 6 3.4069 -6.0750 0.9202 14 6 2.5521 -6.0155 -0.3489 15 6 1.5179 -4.8961 -0.2094 16 1 0.8705 -5.1039 0.6426 17 6 0.6744 -4.8198 -1.4836 18 6 -0.0847 -6.1347 -1.6723 19 6 -0.8484 -6.0971 -2.9975 20 7 -1.5777 -7.3594 -3.1784 21 1 -0.4850 0.8400 0.0004 22 1 0.6248 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 3.4677 -2.6610 1.3805 25 1 2.3412 -3.8467 2.0826 26 1 4.7367 -4.4940 0.3045 27 1 4.6501 -4.7371 2.0660 28 1 4.1729 -6.8422 0.8077 29 1 2.7747 -6.3141 1.7754 30 1 3.1911 -5.8154 -1.2089 31 1 2.0415 -6.9682 -0.4887 32 1 -0.0372 -3.9984 -1.3996 33 1 1.3258 -4.6500 -2.3409 34 1 0.6225 -6.9640 -1.6839 35 1 -0.7887 -6.2689 -0.8510 36 1 -1.5557 -5.2677 -2.9859 37 1 -0.1445 -5.9629 -3.8188 38 1 -2.0903 -7.3595 -4.0475 39 1 -0.9517 -8.1492 -3.1280 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710387509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:16 Heat of formation + Delta-G solvation = -42.897806 kcal Electronic energy + Delta-G solvation = -16351.887297 eV Core-core repulsion = 13906.176564 eV Total energy + Delta-G solvation = -2445.710733 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.24897 -36.87100 -35.44951 -33.97338 -33.47937 -30.16112 -28.91071 -26.10509 -25.47394 -23.35651 -22.37687 -21.53404 -20.44569 -18.47851 -17.04351 -16.88240 -16.31518 -16.07864 -15.77841 -15.29850 -15.03165 -14.76487 -14.46075 -14.06556 -13.88574 -13.59041 -13.14449 -12.83188 -12.67713 -12.58646 -12.41722 -12.29648 -12.00593 -11.78753 -11.72929 -11.54058 -11.33862 -10.98817 -10.78430 -10.53621 -9.61946 -8.96192 -8.20126 -6.30024 1.39307 1.42832 1.50720 2.39685 3.11343 3.22506 3.67555 3.90001 3.94625 4.07881 4.16668 4.25445 4.31932 4.46655 4.55582 4.60888 4.67357 4.77751 4.82288 4.96153 5.01971 5.04335 5.09906 5.16763 5.19722 5.24429 5.30044 5.40380 5.42482 5.46029 5.57033 5.67765 6.08967 6.22122 6.41376 6.63356 6.73515 6.87024 7.39314 8.90811 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.007827 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.708581 B = 3576.545290 C = 4700.384806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.204 3.796 10 N -0.537 5.537 11 C 0.062 3.938 12 C -0.109 4.109 13 C -0.116 4.116 14 C -0.102 4.102 15 C 0.083 3.917 16 H 0.011 0.989 17 C -0.107 4.107 18 C -0.103 4.103 19 C 0.063 3.937 20 N -0.857 5.857 21 H 0.264 0.736 22 H -0.052 1.052 23 H 0.020 0.980 24 H 0.058 0.942 25 H 0.004 0.996 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.034 0.966 38 H 0.350 0.650 39 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -14.321 -3.040 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.078 3.922 10 N -0.262 5.262 11 C -0.066 4.066 12 C -0.147 4.147 13 C -0.153 4.153 14 C -0.140 4.140 15 C -0.026 4.026 16 H 0.029 0.971 17 C -0.146 4.146 18 C -0.141 4.141 19 C -0.068 4.068 20 N -0.388 5.388 21 H 0.073 0.927 22 H -0.035 1.035 23 H 0.038 0.962 24 H 0.076 0.924 25 H 0.023 0.977 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.163 0.837 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.977 -13.930 -2.768 14.748 hybrid contribution -0.158 1.201 -0.005 1.211 sum 3.818 -12.729 -2.773 13.575 Atomic orbital electron populations 1.70090 1.07746 1.27882 1.51850 1.25923 0.95743 1.03190 0.94862 0.85444 0.78165 0.77935 0.79116 1.19241 1.20798 1.19293 1.21464 0.93526 0.91256 1.49982 0.92066 1.19451 0.90386 0.88944 0.93431 1.62017 1.25834 1.02690 1.35673 1.21977 0.95483 0.99679 0.89482 1.21583 0.96797 0.94068 1.02231 1.21582 0.99344 0.96945 0.97469 1.21641 0.96790 0.96873 0.98690 1.21664 0.94500 0.90531 0.95896 0.97131 1.21567 0.97993 0.97543 0.97460 1.21483 0.98469 0.96801 0.97330 1.21697 0.96028 0.92560 0.96476 1.58669 1.32719 1.04235 1.43170 0.92745 1.03463 0.96236 0.92385 0.97728 0.91606 0.90318 0.89393 0.92678 0.91466 0.89596 0.94458 0.91812 0.89885 0.92700 0.92701 0.94779 0.83698 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 13.29 21.45 0.28 -57.48 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.52 -30.66 8.42 25.60 0.22 -30.44 16 8 H 0.06 3.51 7.03 -2.91 -0.02 3.49 16 9 C 0.20 11.34 4.42 85.56 0.38 11.72 16 10 N -0.54 -24.18 4.49 -875.65 -3.93 -28.11 16 11 C 0.06 2.53 5.29 86.33 0.46 2.99 16 12 C -0.11 -3.27 6.09 30.65 0.19 -3.08 16 13 C -0.12 -2.95 6.00 30.68 0.18 -2.76 16 14 C -0.10 -2.83 5.05 30.65 0.15 -2.67 16 15 C 0.08 3.05 1.95 44.94 0.09 3.14 16 16 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 17 C -0.11 -3.78 4.39 30.59 0.13 -3.65 16 18 C -0.10 -2.77 5.28 30.59 0.16 -2.61 16 19 C 0.06 1.57 6.79 86.30 0.59 2.15 16 20 N -0.86 -17.23 9.62 -186.71 -1.80 -19.03 16 21 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 22 H -0.05 -3.23 8.13 -2.39 -0.02 -3.25 16 23 H 0.02 1.16 5.67 -2.39 -0.01 1.14 16 24 H 0.06 2.60 6.61 -2.39 -0.02 2.59 16 25 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 1.93 6.44 -2.39 -0.02 1.91 16 32 H 0.04 1.58 6.01 -2.39 -0.01 1.57 16 33 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.08 1.86 6.30 -2.39 -0.02 1.84 16 35 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.35 5.73 9.08 -89.69 -0.81 4.92 16 39 H 0.35 5.64 8.99 -89.69 -0.81 4.83 16 Total: -1.00 -66.66 299.53 -1.01 -67.67 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -0.60 Total: 14.42 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 3.01 Total: -24.72 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -5.45 Total: -104.62 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.66 -1.01 -67.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710387509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.773 kcal (2) G-P(sol) polarization free energy of solvation -66.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds