Wall clock time and date at job start Mon Mar 30 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99738 * 2 1 4 4 H 1.48500 * 109.47260 * 269.99584 * 3 2 1 5 5 H 1.48503 * 109.47324 * 29.99643 * 3 2 1 6 6 H 1.48502 * 109.47081 * 149.99726 * 3 2 1 7 7 C 1.37873 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00178 * 180.02562 * 7 2 1 10 10 N 1.46907 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46854 * 110.99548 * 293.42567 * 10 9 7 12 12 C 1.53036 * 109.52015 * 174.16232 * 11 10 9 13 13 C 1.53118 * 109.28119 * 59.18069 * 12 11 10 14 14 C 1.53125 * 109.15894 * 302.34505 * 13 12 11 15 15 C 1.46845 * 111.00149 * 169.21676 * 10 9 7 16 16 H 1.09008 * 109.45408 * 65.82517 * 15 10 9 17 17 C 1.52995 * 109.46282 * 305.85243 * 15 10 9 18 18 C 1.52999 * 109.47137 * 303.80349 * 17 15 10 19 19 C 1.53005 * 109.46890 * 179.43974 * 18 17 15 20 20 N 1.46908 * 109.46887 * 179.97438 * 19 18 17 21 21 H 0.96993 * 120.00137 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47509 * 60.00256 * 9 7 2 23 23 H 1.09000 * 109.47310 * 299.99741 * 9 7 2 24 24 H 1.08994 * 109.46439 * 54.14520 * 11 10 9 25 25 H 1.08998 * 109.45562 * 294.17135 * 11 10 9 26 26 H 1.09001 * 109.50153 * 299.23401 * 12 11 10 27 27 H 1.09001 * 109.50355 * 179.12432 * 12 11 10 28 28 H 1.08998 * 109.52478 * 182.44256 * 13 12 11 29 29 H 1.08994 * 109.57727 * 62.28029 * 13 12 11 30 30 H 1.09002 * 109.49918 * 297.71389 * 14 13 12 31 31 H 1.08993 * 109.53678 * 177.61861 * 14 13 12 32 32 H 1.09002 * 109.46932 * 63.80049 * 17 15 10 33 33 H 1.09002 * 109.47115 * 183.79706 * 17 15 10 34 34 H 1.09003 * 109.47005 * 299.43926 * 18 17 15 35 35 H 1.08989 * 109.47296 * 59.44158 * 18 17 15 36 36 H 1.08995 * 109.47465 * 299.99622 * 19 18 17 37 37 H 1.09004 * 109.47310 * 60.00386 * 19 18 17 38 38 H 1.00902 * 110.99316 * 56.04528 * 20 19 18 39 39 H 1.00895 * 110.99716 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 3.6623 -3.2570 1.2587 12 6 4.0569 -4.7328 1.1666 13 6 5.5605 -4.8383 0.8973 14 6 5.8943 -4.0830 -0.3923 15 6 5.4465 -2.6261 -0.2549 16 1 5.9775 -2.1596 0.5749 17 6 5.7599 -1.8724 -1.5489 18 6 4.9411 -2.4668 -2.6965 19 6 5.2441 -1.7039 -3.9877 20 7 4.4583 -2.2751 -5.0898 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8752 -0.6804 -0.8889 24 1 2.5898 -3.1783 1.4362 25 1 4.2020 -2.7875 2.0812 26 1 3.5073 -5.2063 0.3529 27 1 3.8194 -5.2323 2.1058 28 1 5.8383 -5.8865 0.7878 29 1 6.1121 -4.4002 1.7291 30 1 5.3737 -4.5463 -1.2304 31 1 6.9695 -4.1183 -0.5674 32 1 5.5041 -0.8198 -1.4273 33 1 6.8223 -1.9643 -1.7747 34 1 5.2041 -3.5169 -2.8246 35 1 3.8790 -2.3838 -2.4662 36 1 4.9811 -0.6540 -3.8597 37 1 6.3062 -1.7871 -4.2182 38 1 3.4730 -2.2690 -4.8723 39 1 4.6406 -1.7878 -5.9543 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710387510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:19 Heat of formation + Delta-G solvation = -16.424244 kcal Electronic energy + Delta-G solvation = -16759.797728 eV Core-core repulsion = 14315.234975 eV Total energy + Delta-G solvation = -2444.562753 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.92718 -35.45174 -33.61617 -32.56941 -31.75405 -28.78792 -27.54595 -24.88365 -23.55600 -21.65279 -20.95880 -20.35936 -18.57051 -16.77904 -15.65408 -15.29126 -15.05748 -14.40040 -14.21410 -13.91644 -13.67487 -13.29563 -13.03916 -12.80969 -12.23458 -11.84235 -11.69584 -11.52353 -11.28082 -10.94527 -10.75243 -10.64990 -10.43501 -10.35793 -9.99490 -9.90910 -9.80631 -9.45204 -9.17202 -8.55089 -8.50193 -7.25926 -6.04969 -4.01070 3.25501 3.33923 3.36205 4.41185 4.72157 4.81312 5.17738 5.20455 5.27284 5.34135 5.42690 5.51921 5.64338 5.78373 5.89336 5.95089 6.01387 6.03842 6.12099 6.25448 6.27044 6.30408 6.32798 6.46543 6.56927 6.71134 6.76448 6.82758 6.92785 7.02954 7.08026 7.33431 7.62157 7.64643 7.99577 8.15747 8.69523 9.04875 9.57675 11.08237 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017491 B = 0.011196 C = 0.007957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.446435 B = 2500.393240 C = 3517.853981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.157 3.843 10 N -0.517 5.517 11 C 0.064 3.936 12 C -0.117 4.117 13 C -0.119 4.119 14 C -0.110 4.110 15 C 0.083 3.917 16 H 0.026 0.974 17 C -0.111 4.111 18 C -0.111 4.111 19 C 0.059 3.941 20 N -0.853 5.853 21 H 0.262 0.738 22 H -0.017 1.017 23 H 0.031 0.969 24 H 0.087 0.913 25 H 0.016 0.984 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.022 0.978 37 H 0.061 0.939 38 H 0.345 0.655 39 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.657 -5.157 -2.723 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.542 4.542 8 H 0.099 0.901 9 C 0.031 3.969 10 N -0.242 5.242 11 C -0.064 4.064 12 C -0.154 4.154 13 C -0.156 4.156 14 C -0.148 4.148 15 C -0.026 4.026 16 H 0.044 0.956 17 C -0.149 4.149 18 C -0.148 4.148 19 C -0.072 4.072 20 N -0.382 5.382 21 H 0.072 0.928 22 H 0.001 0.999 23 H 0.049 0.951 24 H 0.105 0.895 25 H 0.034 0.966 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.157 0.843 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.678 -5.946 -2.949 13.433 hybrid contribution 0.373 2.487 0.650 2.598 sum 12.051 -3.459 -2.299 12.747 Atomic orbital electron populations 1.69892 1.06056 1.26691 1.51404 1.24882 0.94673 0.98669 0.95073 0.86933 0.80419 0.84364 0.78480 1.20309 1.21249 1.19310 1.21053 0.88832 0.94583 1.49778 0.90137 1.20248 0.96870 0.84678 0.95080 1.61883 1.10391 1.18538 1.33368 1.21961 1.02002 0.92487 0.89969 1.21611 0.95440 0.97309 1.01081 1.21565 0.96953 0.99391 0.97722 1.21643 0.99505 0.95391 0.98235 1.21552 0.90293 0.94945 0.95837 0.95635 1.21611 0.98653 0.99856 0.94818 1.21504 1.02764 0.99128 0.91449 1.21863 0.97390 0.95986 0.91916 1.58781 1.12710 1.61459 1.05251 0.92759 0.99911 0.95138 0.89454 0.96596 0.91336 0.92550 0.92662 0.92962 0.90829 0.92678 0.91949 0.92717 0.91691 0.89380 0.95959 0.92097 0.84264 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.50 -14.08 8.99 -34.44 -0.31 -14.39 16 8 H 0.08 2.46 7.42 -52.48 -0.39 2.07 16 9 C 0.16 3.76 3.15 -4.98 -0.02 3.74 16 10 N -0.52 -10.56 3.62 -228.12 -0.83 -11.39 16 11 C 0.06 1.24 5.30 -3.83 -0.02 1.22 16 12 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 13 C -0.12 -1.65 6.00 -26.61 -0.16 -1.81 16 14 C -0.11 -1.60 5.12 -26.65 -0.14 -1.74 16 15 C 0.08 1.42 2.13 -67.73 -0.14 1.28 16 16 H 0.03 0.46 8.14 -51.92 -0.42 0.03 16 17 C -0.11 -1.78 4.40 -26.73 -0.12 -1.90 16 18 C -0.11 -1.79 4.87 -26.73 -0.13 -1.92 16 19 C 0.06 0.85 6.79 -3.82 -0.03 0.83 16 20 N -0.85 -11.57 9.63 -10.36 -0.10 -11.67 16 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 22 H -0.02 -0.42 7.17 -51.93 -0.37 -0.79 16 23 H 0.03 0.73 4.87 -51.93 -0.25 0.47 16 24 H 0.09 1.90 6.75 -51.93 -0.35 1.55 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.12 6.51 -51.93 -0.34 0.78 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.09 6.32 -51.93 -0.33 0.76 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.03 6.54 -51.93 -0.34 0.69 16 35 H 0.09 1.72 7.01 -51.94 -0.36 1.36 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.34 4.79 8.99 -39.29 -0.35 4.44 16 39 H 0.33 3.76 9.08 -39.29 -0.36 3.40 16 LS Contribution 294.15 15.07 4.43 4.43 Total: -1.00 -29.44 294.15 -8.55 -37.99 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.84 Total: 5.31 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -1.32 Total: -14.82 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.15 Total: -49.70 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.44 -8.55 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710387510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.563 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds