Wall clock time and date at job start Mon Mar 30 2020 03:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.79456 * 2 1 4 4 C 1.50807 * 109.63221 * 239.50006 * 2 1 3 5 5 C 1.53693 * 112.09974 * 332.85325 * 4 2 1 6 6 N 1.48063 * 112.47041 * 318.54675 * 5 4 2 7 7 C 1.44579 * 113.85479 * 318.32256 * 6 5 4 8 8 C 1.54195 * 108.85234 * 94.22855 * 7 6 5 9 9 N 1.40015 * 112.08419 * 281.18390 * 8 7 6 10 10 C 1.46903 * 111.00056 * 188.08982 * 9 8 7 11 11 C 1.53000 * 109.46452 * 65.53271 * 10 9 8 12 12 C 1.50710 * 109.46402 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00546 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99344 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00490 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99565 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46906 * 60.00288 * 16 14 12 18 18 H 1.48503 * 109.47173 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47361 * 300.00129 * 16 14 12 20 20 H 1.08999 * 109.47141 * 332.86421 * 1 2 3 21 21 H 1.09005 * 109.47450 * 92.86255 * 1 2 3 22 22 H 1.08999 * 109.47351 * 212.86056 * 1 2 3 23 23 H 1.09000 * 109.46908 * 173.16619 * 3 2 1 24 24 H 1.09004 * 109.46805 * 293.16480 * 3 2 1 25 25 H 1.08998 * 109.46966 * 53.15841 * 3 2 1 26 26 H 1.08995 * 108.95511 * 212.16850 * 4 2 1 27 27 H 1.09005 * 108.88300 * 93.47399 * 4 2 1 28 28 H 1.09002 * 108.88263 * 197.77981 * 5 4 2 29 29 H 1.08995 * 108.80814 * 79.26702 * 5 4 2 30 30 H 1.00899 * 111.00323 * 84.43792 * 6 5 4 31 31 H 1.09005 * 109.57509 * 334.41391 * 7 6 5 32 32 H 1.09002 * 109.57321 * 214.04329 * 7 6 5 33 33 H 1.09000 * 108.96357 * 160.51329 * 8 7 6 34 34 H 1.09004 * 108.95723 * 41.85301 * 8 7 6 35 35 H 1.08994 * 109.47364 * 305.53375 * 10 9 8 36 36 H 1.08999 * 109.46943 * 185.53128 * 10 9 8 37 37 H 1.08999 * 109.47429 * 299.99559 * 11 10 9 38 38 H 1.08998 * 109.47205 * 60.00553 * 11 10 9 39 39 H 0.97000 * 120.00255 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0480 1.4396 0.0000 4 6 2.0366 -0.7209 -1.2239 5 6 1.0374 -1.7732 -1.7302 6 7 0.4161 -2.5407 -0.6269 7 6 1.3422 -2.9162 0.4180 8 6 1.2934 -1.8523 1.5331 9 7 2.0269 -0.7070 1.2004 10 6 2.1251 0.2066 2.3465 11 6 2.9445 -0.4543 3.4567 12 6 3.0458 0.4833 4.6323 13 1 2.5726 1.4533 4.5918 14 6 3.7416 0.1022 5.7600 15 7 4.3174 -1.0791 5.8096 16 14 3.8677 1.2646 7.2168 17 1 2.5061 1.5737 7.7227 18 1 4.6620 0.6227 8.2950 19 1 4.5347 2.5212 6.7912 20 1 -0.3633 0.9145 0.4687 21 1 -0.3634 -0.0513 -1.0264 22 1 -0.3634 -0.8632 0.5576 23 1 3.1311 1.4359 0.1223 24 1 1.7907 1.9183 -0.9449 25 1 1.5913 1.9901 0.8224 26 1 2.9774 -1.2142 -0.9800 27 1 2.2140 0.0081 -2.0146 28 1 1.5588 -2.4654 -2.3914 29 1 0.2529 -1.2698 -2.2951 30 1 -0.3781 -2.0484 -0.2463 31 1 2.3512 -2.9710 0.0094 32 1 1.0585 -3.8863 0.8261 33 1 1.7009 -2.2802 2.4490 34 1 0.2552 -1.5696 1.7076 35 1 1.1255 0.4323 2.7179 36 1 2.6137 1.1296 2.0345 37 1 2.4559 -1.3773 3.7687 38 1 3.9441 -0.6799 3.0853 39 1 4.8067 -1.3473 6.6030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712600394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:02 Heat of formation + Delta-G solvation = 29.686380 kcal Electronic energy + Delta-G solvation = -16984.535419 eV Core-core repulsion = 14541.972173 eV Total energy + Delta-G solvation = -2442.563247 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.48109 -35.47938 -33.89703 -32.78318 -29.93219 -28.52121 -27.51870 -26.63828 -23.99220 -23.19916 -21.23921 -20.03095 -18.02249 -16.66635 -16.09440 -15.73388 -15.35774 -14.74758 -14.42815 -13.54485 -13.47195 -13.26320 -12.55662 -12.44591 -12.32053 -12.04388 -11.87162 -11.62094 -11.20829 -11.13995 -11.01825 -10.86655 -10.66386 -10.57265 -10.41005 -10.08752 -9.72848 -9.29894 -9.10395 -8.32574 -8.09465 -7.54346 -5.99542 -4.02036 3.32800 3.37362 3.39483 4.31364 4.46277 4.52306 4.92494 4.98505 5.14024 5.24446 5.36030 5.38257 5.46317 5.59488 5.69187 5.77732 5.83748 5.91540 5.97165 6.07400 6.12815 6.19543 6.28815 6.30820 6.41935 6.43515 6.56721 6.63768 7.01435 7.27302 7.54864 7.56086 7.75522 7.84232 8.03360 8.10714 8.44635 9.05060 9.61504 11.11726 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044171 B = 0.006645 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.746766 B = 4212.718074 C = 4541.375679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.112 3.888 3 C -0.141 4.141 4 C -0.140 4.140 5 C 0.065 3.935 6 N -0.709 5.709 7 C 0.066 3.934 8 C 0.028 3.972 9 N -0.538 5.538 10 C 0.060 3.940 11 C 0.028 3.972 12 C -0.523 4.523 13 H 0.052 0.948 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.344 0.656 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.021 0.979 35 H 0.016 0.984 36 H 0.070 0.930 37 H 0.016 0.984 38 H 0.023 0.977 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 0.454 -13.278 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.023 3.977 3 C -0.199 4.199 4 C -0.180 4.180 5 C -0.064 4.064 6 N -0.344 5.344 7 C -0.064 4.064 8 C -0.103 4.103 9 N -0.262 5.262 10 C -0.066 4.066 11 C -0.010 4.010 12 C -0.561 4.561 13 H 0.071 0.929 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.095 0.905 23 H 0.085 0.915 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.168 0.832 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.039 0.961 35 H 0.034 0.966 36 H 0.089 0.911 37 H 0.034 0.966 38 H 0.042 0.958 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.181 -0.411 -13.589 14.934 hybrid contribution -0.545 1.739 1.572 2.407 sum -6.726 1.328 -12.017 13.835 Atomic orbital electron populations 1.23021 0.97890 1.02763 1.02225 1.20709 0.91892 0.93780 0.91329 1.22073 1.02232 0.94467 1.01089 1.22100 1.00839 0.98435 0.96626 1.22288 0.96598 0.93935 0.93558 1.59780 1.11547 1.48992 1.14058 1.21907 0.96869 0.97073 0.90535 1.21789 0.95821 0.92277 1.00441 1.59621 1.53674 1.07400 1.05548 1.22458 0.98607 0.95613 0.89921 1.19127 0.95318 0.95601 0.90906 1.21153 1.33229 1.01866 0.99893 0.92949 1.24987 0.95523 0.95183 0.98552 1.69958 1.34779 1.19447 1.29027 0.86670 0.78068 0.81086 0.82233 1.20328 1.21250 1.20243 0.92829 0.91974 0.90492 0.91464 0.92880 0.92147 0.90583 0.91820 0.91606 0.91982 0.83216 0.90600 0.90838 0.89160 0.96149 0.96556 0.91145 0.96610 0.95847 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.61 7.29 37.15 0.27 -2.34 16 2 C 0.11 1.62 0.72 -132.15 -0.10 1.53 16 3 C -0.14 -1.99 6.89 37.16 0.26 -1.73 16 4 C -0.14 -1.81 4.73 -27.47 -0.13 -1.94 16 5 C 0.07 0.77 5.75 -2.82 -0.02 0.75 16 6 N -0.71 -9.25 6.53 -113.50 -0.74 -9.99 16 7 C 0.07 0.96 6.30 -4.44 -0.03 0.94 16 8 C 0.03 0.47 4.67 -6.75 -0.03 0.44 16 9 N -0.54 -9.60 3.99 -224.06 -0.89 -10.49 16 10 C 0.06 1.26 4.13 -3.82 -0.02 1.25 16 11 C 0.03 0.72 4.86 -27.88 -0.14 0.59 16 12 C -0.52 -14.86 9.11 -34.43 -0.31 -15.17 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 16 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H 0.05 0.71 7.69 -51.93 -0.40 0.31 16 21 H 0.06 0.70 6.09 -51.93 -0.32 0.38 16 22 H 0.08 1.05 2.90 -51.93 -0.15 0.90 16 23 H 0.07 1.02 7.79 -51.93 -0.40 0.61 16 24 H 0.05 0.62 7.93 -51.93 -0.41 0.21 16 25 H 0.06 0.89 6.66 -51.93 -0.35 0.55 16 26 H 0.08 1.12 7.23 -51.93 -0.38 0.74 16 27 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.64 6.99 -51.93 -0.36 0.28 16 30 H 0.34 4.36 5.05 -39.29 -0.20 4.16 16 31 H 0.08 1.16 6.93 -51.93 -0.36 0.80 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.77 5.90 -51.93 -0.31 1.47 16 34 H 0.02 0.35 5.60 -51.93 -0.29 0.06 16 35 H 0.02 0.35 8.11 -51.93 -0.42 -0.07 16 36 H 0.07 1.46 5.40 -51.93 -0.28 1.18 16 37 H 0.02 0.43 6.35 -51.93 -0.33 0.10 16 38 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 279.30 15.07 4.21 4.21 Total: -1.00 -29.34 279.30 -8.21 -37.55 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.16 Total: 2.33 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -0.34 Total: -14.09 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.90 Total: -46.71 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.34 -8.21 -37.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712600394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.234 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds