Wall clock time and date at job start Mon Mar 30 2020 03:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.79456 * 2 1 4 4 C 1.50807 * 109.63221 * 239.50006 * 2 1 3 5 5 C 1.53693 * 112.09974 * 332.85325 * 4 2 1 6 6 N 1.48063 * 112.47041 * 318.54675 * 5 4 2 7 7 C 1.44579 * 113.85479 * 318.32256 * 6 5 4 8 8 C 1.54195 * 108.85234 * 94.22855 * 7 6 5 9 9 N 1.40015 * 112.08419 * 281.18390 * 8 7 6 10 10 C 1.46903 * 111.00056 * 188.08982 * 9 8 7 11 11 C 1.53000 * 109.46452 * 65.53271 * 10 9 8 12 12 C 1.50710 * 109.46402 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00546 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99344 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00490 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99565 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46906 * 60.00288 * 16 14 12 18 18 H 1.48503 * 109.47173 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47361 * 300.00129 * 16 14 12 20 20 H 1.08999 * 109.47141 * 332.86421 * 1 2 3 21 21 H 1.09005 * 109.47450 * 92.86255 * 1 2 3 22 22 H 1.08999 * 109.47351 * 212.86056 * 1 2 3 23 23 H 1.09000 * 109.46908 * 173.16619 * 3 2 1 24 24 H 1.09004 * 109.46805 * 293.16480 * 3 2 1 25 25 H 1.08998 * 109.46966 * 53.15841 * 3 2 1 26 26 H 1.08995 * 108.95511 * 212.16850 * 4 2 1 27 27 H 1.09005 * 108.88300 * 93.47399 * 4 2 1 28 28 H 1.09002 * 108.88263 * 197.77981 * 5 4 2 29 29 H 1.08995 * 108.80814 * 79.26702 * 5 4 2 30 30 H 1.00899 * 111.00323 * 84.43792 * 6 5 4 31 31 H 1.09005 * 109.57509 * 334.41391 * 7 6 5 32 32 H 1.09002 * 109.57321 * 214.04329 * 7 6 5 33 33 H 1.09000 * 108.96357 * 160.51329 * 8 7 6 34 34 H 1.09004 * 108.95723 * 41.85301 * 8 7 6 35 35 H 1.08994 * 109.47364 * 305.53375 * 10 9 8 36 36 H 1.08999 * 109.46943 * 185.53128 * 10 9 8 37 37 H 1.08999 * 109.47429 * 299.99559 * 11 10 9 38 38 H 1.08998 * 109.47205 * 60.00553 * 11 10 9 39 39 H 0.97000 * 120.00255 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0480 1.4396 0.0000 4 6 2.0366 -0.7209 -1.2239 5 6 1.0374 -1.7732 -1.7302 6 7 0.4161 -2.5407 -0.6269 7 6 1.3422 -2.9162 0.4180 8 6 1.2934 -1.8523 1.5331 9 7 2.0269 -0.7070 1.2004 10 6 2.1251 0.2066 2.3465 11 6 2.9445 -0.4543 3.4567 12 6 3.0458 0.4833 4.6323 13 1 2.5726 1.4533 4.5918 14 6 3.7416 0.1022 5.7600 15 7 4.3174 -1.0791 5.8096 16 14 3.8677 1.2646 7.2168 17 1 2.5061 1.5737 7.7227 18 1 4.6620 0.6227 8.2950 19 1 4.5347 2.5212 6.7912 20 1 -0.3633 0.9145 0.4687 21 1 -0.3634 -0.0513 -1.0264 22 1 -0.3634 -0.8632 0.5576 23 1 3.1311 1.4359 0.1223 24 1 1.7907 1.9183 -0.9449 25 1 1.5913 1.9901 0.8224 26 1 2.9774 -1.2142 -0.9800 27 1 2.2140 0.0081 -2.0146 28 1 1.5588 -2.4654 -2.3914 29 1 0.2529 -1.2698 -2.2951 30 1 -0.3781 -2.0484 -0.2463 31 1 2.3512 -2.9710 0.0094 32 1 1.0585 -3.8863 0.8261 33 1 1.7009 -2.2802 2.4490 34 1 0.2552 -1.5696 1.7076 35 1 1.1255 0.4323 2.7179 36 1 2.6137 1.1296 2.0345 37 1 2.4559 -1.3773 3.7687 38 1 3.9441 -0.6799 3.0853 39 1 4.8067 -1.3473 6.6030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712600394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:02 Heat of formation + Delta-G solvation = 9.151627 kcal Electronic energy + Delta-G solvation = -16985.425873 eV Core-core repulsion = 14541.972173 eV Total energy + Delta-G solvation = -2443.453700 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.72997 -36.88262 -35.32752 -34.64084 -31.72826 -29.68777 -28.64907 -28.16490 -25.83139 -24.42390 -22.78034 -21.47367 -19.33520 -18.56794 -17.42593 -17.09057 -16.71297 -16.38291 -15.98318 -15.04559 -14.73086 -14.55265 -14.26767 -13.91453 -13.61419 -13.42422 -13.12726 -13.03652 -12.83638 -12.66734 -12.47396 -12.38032 -12.13689 -11.95052 -11.67268 -11.60479 -11.31721 -11.13592 -11.11103 -10.53782 -9.21367 -8.95872 -8.21443 -6.33193 1.38165 1.41458 1.49466 2.38529 3.01733 3.11586 3.41844 3.82703 3.85498 3.96874 4.12923 4.24828 4.32700 4.39346 4.53015 4.61619 4.66191 4.71145 4.73704 4.83793 4.90649 4.95815 5.03755 5.08321 5.12223 5.16522 5.25164 5.30765 5.44061 5.51170 5.67594 5.79104 6.15444 6.18649 6.37257 6.50885 6.66835 6.84410 7.35948 8.90433 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044171 B = 0.006645 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.746766 B = 4212.718074 C = 4541.375679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.106 3.894 3 C -0.140 4.140 4 C -0.135 4.135 5 C 0.066 3.934 6 N -0.706 5.706 7 C 0.080 3.920 8 C 0.031 3.969 9 N -0.549 5.549 10 C 0.080 3.920 11 C 0.037 3.963 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.966 3.034 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.266 1.266 20 H 0.050 0.950 21 H 0.088 0.912 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.348 0.652 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.026 0.974 35 H 0.011 0.989 36 H 0.074 0.926 37 H -0.009 1.009 38 H -0.011 1.011 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.974 1.666 -14.572 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.018 3.982 3 C -0.198 4.198 4 C -0.175 4.175 5 C -0.063 4.063 6 N -0.341 5.341 7 C -0.051 4.051 8 C -0.100 4.100 9 N -0.274 5.274 10 C -0.047 4.047 11 C 0.000 4.000 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.790 3.210 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.191 1.191 20 H 0.069 0.931 21 H 0.107 0.893 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.173 0.827 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.092 0.908 37 H 0.009 0.991 38 H 0.007 0.993 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.371 0.806 -14.910 16.652 hybrid contribution -0.169 1.334 1.923 2.346 sum -7.540 2.140 -12.987 15.169 Atomic orbital electron populations 1.22959 0.96242 1.02308 1.03770 1.20916 0.93238 0.93914 0.90084 1.22068 1.01049 0.94252 1.02390 1.22052 1.00038 0.99038 0.96361 1.22380 0.97075 0.93781 0.93082 1.59799 1.11214 1.49543 1.13568 1.21737 0.96903 0.96387 0.90060 1.21753 0.95563 0.92619 1.00062 1.59550 1.55033 1.07335 1.05436 1.22058 0.97182 0.95722 0.89749 1.18947 0.93974 0.94811 0.92301 1.21594 1.33460 1.02450 1.00941 0.92326 1.25967 0.94891 0.96922 1.01827 1.70105 1.35487 1.21476 1.30062 0.85495 0.78551 0.78844 0.78115 1.19200 1.20731 1.19071 0.93058 0.89298 0.91214 0.93055 0.89740 0.93216 0.92832 0.89424 0.90927 0.89485 0.82738 0.91529 0.90179 0.92945 0.95633 0.97043 0.90767 0.99056 0.99298 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.56 7.29 71.98 0.52 -4.03 16 2 C 0.11 2.92 0.72 2.62 0.00 2.92 16 3 C -0.14 -3.71 6.89 71.98 0.50 -3.21 16 4 C -0.14 -3.17 4.73 30.12 0.14 -3.02 16 5 C 0.07 1.33 5.75 86.31 0.50 1.83 16 6 N -0.71 -16.86 6.53 -513.00 -3.35 -20.21 16 7 C 0.08 2.29 6.30 87.14 0.55 2.84 16 8 C 0.03 1.09 4.67 87.95 0.41 1.50 16 9 N -0.55 -19.87 3.99 -862.79 -3.45 -23.32 16 10 C 0.08 3.45 4.13 86.30 0.36 3.80 16 11 C 0.04 2.03 4.86 29.85 0.15 2.18 16 12 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 14 C 0.00 0.12 5.46 84.66 0.46 0.58 16 15 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 16 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H 0.05 1.23 7.69 -2.39 -0.02 1.22 16 21 H 0.09 1.62 6.09 -2.38 -0.01 1.60 16 22 H 0.07 1.76 2.90 -2.39 -0.01 1.76 16 23 H 0.05 1.51 7.79 -2.39 -0.02 1.49 16 24 H 0.08 1.70 7.93 -2.39 -0.02 1.68 16 25 H 0.05 1.41 6.66 -2.39 -0.02 1.39 16 26 H 0.05 1.51 7.23 -2.39 -0.02 1.50 16 27 H 0.09 1.66 7.60 -2.38 -0.02 1.64 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.39 6.99 -2.39 -0.02 1.37 16 30 H 0.35 7.94 5.05 -89.69 -0.45 7.49 16 31 H 0.07 2.04 6.93 -2.38 -0.02 2.02 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 2.21 5.90 -2.39 -0.01 2.19 16 34 H 0.03 0.87 5.60 -2.38 -0.01 0.86 16 35 H 0.01 0.50 8.11 -2.39 -0.02 0.48 16 36 H 0.07 3.13 5.40 -2.39 -0.01 3.12 16 37 H -0.01 -0.52 6.35 -2.39 -0.02 -0.53 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -64.69 279.30 -0.09 -64.77 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.58 Total: 15.66 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 3.82 Total: -26.19 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -6.51 Total: -101.06 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.69 -0.09 -64.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712600394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.926 kcal (2) G-P(sol) polarization free energy of solvation -64.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds