Wall clock time and date at job start Mon Mar 30 2020 04:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00299 * 2 1 4 4 C 1.52998 * 109.47368 * 65.87218 * 3 2 1 5 5 C 1.50707 * 115.55011 * 54.35578 * 4 3 2 6 6 H 1.07998 * 120.00090 * 215.97153 * 5 4 3 7 7 C 1.37875 * 119.99384 * 35.69876 * 5 4 3 8 8 N 1.31511 * 120.00338 * 1.45129 * 7 5 4 9 9 Si 1.86808 * 119.99541 * 181.44974 * 7 5 4 10 10 H 1.48494 * 109.47060 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46929 * 120.00199 * 9 7 5 12 12 H 1.48496 * 109.47006 * 239.99908 * 9 7 5 13 13 C 1.53004 * 117.50270 * 200.03215 * 4 3 2 14 14 C 1.53004 * 117.49744 * 268.69564 * 4 3 2 15 15 C 1.46906 * 110.99918 * 236.04539 * 2 1 3 16 16 C 1.52997 * 109.47219 * 60.39216 * 15 2 1 17 17 C 1.52999 * 109.47053 * 180.39305 * 15 2 1 18 18 C 1.52995 * 109.46942 * 300.39070 * 15 2 1 19 19 N 1.46901 * 109.47367 * 65.33581 * 18 15 2 20 20 H 1.09000 * 109.46627 * 69.72765 * 1 2 3 21 21 H 1.08994 * 109.47334 * 189.72500 * 1 2 3 22 22 H 1.09001 * 109.46725 * 309.73101 * 1 2 3 23 23 H 1.09002 * 109.47167 * 305.87098 * 3 2 1 24 24 H 1.08997 * 109.47663 * 185.87044 * 3 2 1 25 25 H 0.96998 * 119.99887 * 184.71649 * 8 7 5 26 26 H 1.08996 * 117.49771 * 215.00158 * 13 4 3 27 27 H 1.08997 * 117.49512 * 0.02562 * 13 4 3 28 28 H 1.09000 * 117.50226 * 359.96636 * 14 4 3 29 29 H 1.08999 * 117.49698 * 144.97499 * 14 4 3 30 30 H 1.09001 * 109.47286 * 59.99586 * 16 15 2 31 31 H 1.08996 * 109.47356 * 180.02562 * 16 15 2 32 32 H 1.09005 * 109.47043 * 299.99988 * 16 15 2 33 33 H 1.09000 * 109.47399 * 59.99800 * 17 15 2 34 34 H 1.08995 * 109.47283 * 180.02562 * 17 15 2 35 35 H 1.09008 * 109.47023 * 300.00012 * 17 15 2 36 36 H 1.09006 * 109.47172 * 185.33531 * 18 15 2 37 37 H 1.09003 * 109.47696 * 305.33800 * 18 15 2 38 38 H 1.00901 * 110.99402 * 56.04808 * 19 18 15 39 39 H 1.00897 * 111.00246 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6279 2.0588 1.3164 5 6 2.0445 1.3308 2.5685 6 1 1.4118 1.3553 3.4433 7 6 3.2309 0.6288 2.5951 8 7 4.0125 0.6180 1.5375 9 14 3.7280 -0.3071 4.1335 10 1 2.6835 -0.1374 5.1753 11 1 3.8742 -1.7490 3.8101 12 1 5.0211 0.2207 4.6378 13 6 1.6551 3.5883 1.3464 14 6 0.3164 2.8458 1.3602 15 6 1.9955 -0.7660 -1.1376 16 6 1.5129 -0.1343 -2.4449 17 6 3.5249 -0.7514 -1.0983 18 6 1.4969 -2.2101 -1.0545 19 7 0.0375 -2.2347 -1.2204 20 1 -0.3632 0.3561 -0.9640 21 1 -0.3634 -1.0128 0.1736 22 1 -0.3633 0.6569 0.7904 23 1 1.5636 1.9264 -0.8328 24 1 3.0801 1.3442 -0.1051 25 1 4.8126 0.0697 1.5313 26 1 1.9744 4.0679 2.2716 27 1 1.9345 4.1048 0.4281 28 1 -0.2841 2.8742 0.4511 29 1 -0.2450 2.8367 2.2945 30 1 1.8680 0.8945 -2.5041 31 1 1.9031 -0.7029 -3.2889 32 1 0.4233 -0.1448 -2.4729 33 1 3.8687 -1.2015 -0.1669 34 1 3.9155 -1.3194 -1.9425 35 1 3.8801 0.2774 -1.1575 36 1 1.9623 -2.8011 -1.8433 37 1 1.7592 -2.6298 -0.0833 38 1 -0.2355 -1.7924 -2.0852 39 1 -0.3163 -3.1782 -1.1697 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714239674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:25 Heat of formation + Delta-G solvation = 53.223034 kcal Electronic energy + Delta-G solvation = -17547.575941 eV Core-core repulsion = 15106.033320 eV Total energy + Delta-G solvation = -2441.542621 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.70948 -36.16746 -32.83207 -31.89591 -30.63486 -26.98318 -26.06765 -25.22721 -24.16147 -22.50646 -21.00918 -18.81914 -17.88091 -15.99634 -15.62149 -15.18278 -14.54239 -14.03218 -13.82198 -13.62832 -12.92151 -12.70282 -12.48838 -12.16853 -11.54968 -11.37952 -11.08300 -11.01728 -10.85483 -10.79538 -10.47505 -10.35055 -10.28098 -10.18305 -9.99352 -9.59451 -9.18362 -8.72293 -8.43545 -7.91512 -7.84490 -6.73909 -5.72041 -3.77784 3.41120 3.48849 3.53625 4.58527 4.91557 4.98589 5.32363 5.45212 5.65642 5.77556 5.83214 5.90246 6.06270 6.26859 6.35502 6.36430 6.47328 6.53200 6.58254 6.72184 6.77483 6.83627 6.86181 6.91144 7.06891 7.09562 7.28383 7.40990 7.43625 7.50093 7.51868 7.69668 7.84877 8.22344 8.53360 8.60227 8.80048 9.16156 9.81398 11.25445 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.012740 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.764623 B = 2197.241273 C = 2737.360256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.478 5.478 3 C 0.097 3.903 4 C 0.070 3.930 5 C -0.467 4.467 6 H 0.051 0.949 7 C 0.088 3.912 8 N -0.870 5.870 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.290 1.290 13 C -0.213 4.213 14 C -0.217 4.217 15 C 0.113 3.887 16 C -0.185 4.185 17 C -0.125 4.125 18 C 0.077 3.923 19 N -0.836 5.836 20 H -0.007 1.007 21 H 0.100 0.900 22 H 0.055 0.945 23 H -0.025 1.025 24 H 0.124 0.876 25 H 0.253 0.747 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.018 0.982 37 H 0.079 0.921 38 H 0.333 0.667 39 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -4.327 -7.285 9.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.199 5.199 3 C -0.030 4.030 4 C 0.069 3.931 5 C -0.504 4.504 6 H 0.069 0.931 7 C -0.115 4.115 8 N -0.508 5.508 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.217 1.217 13 C -0.251 4.251 14 C -0.254 4.254 15 C 0.022 3.978 16 C -0.244 4.244 17 C -0.183 4.183 18 C -0.054 4.054 19 N -0.366 5.366 20 H 0.012 0.988 21 H 0.118 0.882 22 H 0.074 0.926 23 H -0.007 1.007 24 H 0.141 0.859 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.098 0.902 38 H 0.147 0.853 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.024 -4.168 -6.217 8.072 hybrid contribution 0.044 -0.517 -0.880 1.021 sum -2.979 -4.686 -7.096 9.010 Atomic orbital electron populations 1.22941 0.88900 1.04092 0.97420 1.61876 1.06252 1.14243 1.37578 1.21939 1.03161 0.85780 0.92079 1.18994 0.91513 0.87148 0.95428 1.20310 1.03750 1.30691 0.95646 0.93095 1.24696 0.95852 0.95444 0.95482 1.69834 1.13770 1.39281 1.27914 0.86639 0.77922 0.79855 0.83976 1.20252 1.21190 1.21668 1.22997 1.01736 1.00666 0.99718 1.22913 0.91555 1.11438 0.99537 1.20962 0.95403 0.92566 0.88860 1.22562 1.01266 1.01599 0.98983 1.21788 0.93276 1.02621 1.00610 1.21841 0.86718 0.96411 1.00439 1.59310 1.12545 1.22743 1.41965 0.98848 0.88235 0.92615 1.00682 0.85912 0.93616 0.90685 0.92229 0.92035 0.91093 0.92532 0.93848 0.92456 0.90878 0.95370 0.91352 0.96412 0.90211 0.85315 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 8.00 60.07 0.48 0.78 16 2 N -0.48 -10.34 4.15 -227.17 -0.94 -11.28 16 3 C 0.10 2.30 3.09 -3.83 -0.01 2.29 16 4 C 0.07 1.76 1.46 -155.65 -0.23 1.53 16 5 C -0.47 -12.79 8.74 -34.44 -0.30 -13.09 16 6 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 7 C 0.09 2.35 5.28 -17.82 -0.09 2.25 16 8 N -0.87 -22.89 8.78 55.43 0.49 -22.41 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C -0.21 -5.01 9.96 -26.69 -0.27 -5.27 16 14 C -0.22 -4.96 8.12 -26.69 -0.22 -5.18 16 15 C 0.11 2.07 0.68 -131.60 -0.09 1.98 16 16 C -0.18 -3.03 7.34 37.16 0.27 -2.76 16 17 C -0.13 -2.37 7.38 37.16 0.27 -2.10 16 18 C 0.08 1.23 5.80 -3.83 -0.02 1.21 16 19 N -0.84 -11.62 5.88 -10.37 -0.06 -11.68 16 20 H -0.01 -0.13 6.02 -51.93 -0.31 -0.45 16 21 H 0.10 1.95 5.44 -51.93 -0.28 1.67 16 22 H 0.06 1.24 5.54 -51.93 -0.29 0.96 16 23 H -0.02 -0.58 6.85 -51.93 -0.36 -0.93 16 24 H 0.12 3.12 3.57 -51.93 -0.19 2.93 16 25 H 0.25 6.45 8.19 -40.82 -0.33 6.12 16 26 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 29 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.06 1.00 6.71 -51.93 -0.35 0.65 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.90 4.69 -51.93 -0.24 0.66 16 33 H 0.07 1.54 7.24 -51.93 -0.38 1.16 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 1.41 6.11 -51.92 -0.32 1.09 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.33 4.30 6.87 -39.29 -0.27 4.04 16 39 H 0.33 3.78 9.08 -39.29 -0.36 3.42 16 LS Contribution 284.71 15.07 4.29 4.29 Total: -1.00 -27.05 284.71 -7.70 -34.75 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.25 Total: 8.32 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -0.20 Total: -18.35 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.52 Total: -45.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.05 -7.70 -34.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714239674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.977 kcal (2) G-P(sol) polarization free energy of solvation -27.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds