Wall clock time and date at job start Mon Mar 30 2020 04:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00299 * 2 1 4 4 C 1.52998 * 109.47368 * 65.87218 * 3 2 1 5 5 C 1.50707 * 115.55011 * 54.35578 * 4 3 2 6 6 H 1.07998 * 120.00090 * 215.97153 * 5 4 3 7 7 C 1.37875 * 119.99384 * 35.69876 * 5 4 3 8 8 N 1.31511 * 120.00338 * 1.45129 * 7 5 4 9 9 Si 1.86808 * 119.99541 * 181.44974 * 7 5 4 10 10 H 1.48494 * 109.47060 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46929 * 120.00199 * 9 7 5 12 12 H 1.48496 * 109.47006 * 239.99908 * 9 7 5 13 13 C 1.53004 * 117.50270 * 200.03215 * 4 3 2 14 14 C 1.53004 * 117.49744 * 268.69564 * 4 3 2 15 15 C 1.46906 * 110.99918 * 236.04539 * 2 1 3 16 16 C 1.52997 * 109.47219 * 60.39216 * 15 2 1 17 17 C 1.52999 * 109.47053 * 180.39305 * 15 2 1 18 18 C 1.52995 * 109.46942 * 300.39070 * 15 2 1 19 19 N 1.46901 * 109.47367 * 65.33581 * 18 15 2 20 20 H 1.09000 * 109.46627 * 69.72765 * 1 2 3 21 21 H 1.08994 * 109.47334 * 189.72500 * 1 2 3 22 22 H 1.09001 * 109.46725 * 309.73101 * 1 2 3 23 23 H 1.09002 * 109.47167 * 305.87098 * 3 2 1 24 24 H 1.08997 * 109.47663 * 185.87044 * 3 2 1 25 25 H 0.96998 * 119.99887 * 184.71649 * 8 7 5 26 26 H 1.08996 * 117.49771 * 215.00158 * 13 4 3 27 27 H 1.08997 * 117.49512 * 0.02562 * 13 4 3 28 28 H 1.09000 * 117.50226 * 359.96636 * 14 4 3 29 29 H 1.08999 * 117.49698 * 144.97499 * 14 4 3 30 30 H 1.09001 * 109.47286 * 59.99586 * 16 15 2 31 31 H 1.08996 * 109.47356 * 180.02562 * 16 15 2 32 32 H 1.09005 * 109.47043 * 299.99988 * 16 15 2 33 33 H 1.09000 * 109.47399 * 59.99800 * 17 15 2 34 34 H 1.08995 * 109.47283 * 180.02562 * 17 15 2 35 35 H 1.09008 * 109.47023 * 300.00012 * 17 15 2 36 36 H 1.09006 * 109.47172 * 185.33531 * 18 15 2 37 37 H 1.09003 * 109.47696 * 305.33800 * 18 15 2 38 38 H 1.00901 * 110.99402 * 56.04808 * 19 18 15 39 39 H 1.00897 * 111.00246 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6279 2.0588 1.3164 5 6 2.0445 1.3308 2.5685 6 1 1.4118 1.3553 3.4433 7 6 3.2309 0.6288 2.5951 8 7 4.0125 0.6180 1.5375 9 14 3.7280 -0.3071 4.1335 10 1 2.6835 -0.1374 5.1753 11 1 3.8742 -1.7490 3.8101 12 1 5.0211 0.2207 4.6378 13 6 1.6551 3.5883 1.3464 14 6 0.3164 2.8458 1.3602 15 6 1.9955 -0.7660 -1.1376 16 6 1.5129 -0.1343 -2.4449 17 6 3.5249 -0.7514 -1.0983 18 6 1.4969 -2.2101 -1.0545 19 7 0.0375 -2.2347 -1.2204 20 1 -0.3632 0.3561 -0.9640 21 1 -0.3634 -1.0128 0.1736 22 1 -0.3633 0.6569 0.7904 23 1 1.5636 1.9264 -0.8328 24 1 3.0801 1.3442 -0.1051 25 1 4.8126 0.0697 1.5313 26 1 1.9744 4.0679 2.2716 27 1 1.9345 4.1048 0.4281 28 1 -0.2841 2.8742 0.4511 29 1 -0.2450 2.8367 2.2945 30 1 1.8680 0.8945 -2.5041 31 1 1.9031 -0.7029 -3.2889 32 1 0.4233 -0.1448 -2.4729 33 1 3.8687 -1.2015 -0.1669 34 1 3.9155 -1.3194 -1.9425 35 1 3.8801 0.2774 -1.1575 36 1 1.9623 -2.8011 -1.8433 37 1 1.7592 -2.6298 -0.0833 38 1 -0.2355 -1.7924 -2.0852 39 1 -0.3163 -3.1782 -1.1697 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714239674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:25 Heat of formation + Delta-G solvation = 36.096304 kcal Electronic energy + Delta-G solvation = -17548.318611 eV Core-core repulsion = 15106.033320 eV Total energy + Delta-G solvation = -2442.285291 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26641 -37.92713 -34.22857 -33.91497 -32.13304 -28.45140 -27.75201 -27.15752 -25.61072 -24.10502 -22.87008 -20.71362 -19.40043 -17.90724 -16.94509 -16.61768 -16.51117 -15.65005 -15.45212 -15.13369 -14.55937 -14.35442 -14.06403 -13.66981 -13.24396 -12.93389 -12.79765 -12.72103 -12.63708 -12.48485 -12.24204 -12.15927 -11.96557 -11.73917 -11.58161 -11.32947 -11.05283 -10.68190 -10.34821 -9.83203 -9.10467 -8.35912 -7.74173 -5.86616 1.47125 1.51119 1.59056 2.58169 3.19500 3.54868 3.80678 3.85719 4.09243 4.27803 4.43515 4.46927 4.61745 4.68727 4.74518 4.81317 4.93637 4.96960 4.99416 5.04870 5.08769 5.11833 5.18295 5.19322 5.31740 5.55031 5.59004 5.64367 5.73020 5.81914 5.91019 6.25927 6.34975 6.58986 6.72502 6.92855 7.03927 7.15133 7.72945 9.19470 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.012740 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.764623 B = 2197.241273 C = 2737.360256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.497 5.497 3 C 0.112 3.888 4 C 0.044 3.956 5 C -0.490 4.490 6 H 0.031 0.969 7 C 0.057 3.943 8 N -0.872 5.872 9 Si 0.936 3.064 10 H -0.284 1.284 11 H -0.283 1.283 12 H -0.287 1.287 13 C -0.213 4.213 14 C -0.198 4.198 15 C 0.106 3.894 16 C -0.175 4.175 17 C -0.116 4.116 18 C 0.086 3.914 19 N -0.841 5.841 20 H 0.005 0.995 21 H 0.109 0.891 22 H 0.031 0.969 23 H -0.027 1.027 24 H 0.104 0.896 25 H 0.254 0.746 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.055 0.945 38 H 0.342 0.658 39 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.859 -5.328 -8.532 10.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.220 5.220 3 C -0.015 4.015 4 C 0.043 3.957 5 C -0.527 4.527 6 H 0.049 0.951 7 C -0.145 4.145 8 N -0.509 5.509 9 Si 0.764 3.236 10 H -0.209 1.209 11 H -0.209 1.209 12 H -0.214 1.214 13 C -0.252 4.252 14 C -0.235 4.235 15 C 0.015 3.985 16 C -0.234 4.234 17 C -0.174 4.174 18 C -0.045 4.045 19 N -0.373 5.373 20 H 0.023 0.977 21 H 0.127 0.873 22 H 0.049 0.951 23 H -0.009 1.009 24 H 0.121 0.879 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.157 0.843 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.500 -5.176 -7.478 9.745 hybrid contribution 0.197 -0.215 -0.498 0.577 sum -3.303 -5.391 -7.976 10.178 Atomic orbital electron populations 1.22870 0.88268 1.04108 0.97103 1.61805 1.06925 1.13282 1.39946 1.21638 1.01908 0.86935 0.91040 1.19135 0.93320 0.87754 0.95471 1.20376 1.04117 1.32187 0.96054 0.95076 1.25156 0.95846 0.96055 0.97479 1.69937 1.13573 1.38997 1.28392 0.85890 0.77295 0.78920 0.81489 1.20889 1.20922 1.21389 1.23001 1.02305 0.99932 0.99957 1.22837 0.90989 1.09687 1.00010 1.21099 0.94874 0.93680 0.88834 1.22427 1.01692 1.00660 0.98582 1.21668 0.94054 1.01315 1.00396 1.21621 0.88151 0.94719 1.00041 1.59099 1.11222 1.24267 1.42688 0.97666 0.87315 0.95053 1.00888 0.87863 0.93564 0.91380 0.91024 0.90606 0.91360 0.94290 0.91310 0.91674 0.93512 0.92486 0.93597 0.93992 0.92613 0.84285 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.98 8.00 127.69 1.02 2.00 16 2 N -0.50 -21.19 4.15 -872.64 -3.62 -24.81 16 3 C 0.11 5.29 3.09 86.30 0.27 5.56 16 4 C 0.04 2.21 1.46 -52.92 -0.08 2.14 16 5 C -0.49 -27.21 8.74 25.60 0.22 -26.99 16 6 H 0.03 1.80 7.81 -2.91 -0.02 1.77 16 7 C 0.06 3.05 5.28 84.65 0.45 3.50 16 8 N -0.87 -46.17 8.78 21.45 0.19 -45.98 16 9 Si 0.94 44.17 29.54 68.60 2.03 46.19 16 10 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 13 C -0.21 -10.01 9.96 30.62 0.30 -9.70 16 14 C -0.20 -8.95 8.12 30.62 0.25 -8.70 16 15 C 0.11 3.69 0.68 3.52 0.00 3.69 16 16 C -0.17 -5.26 7.34 71.98 0.53 -4.73 16 17 C -0.12 -4.29 7.38 71.98 0.53 -3.76 16 18 C 0.09 2.54 5.80 86.30 0.50 3.04 16 19 N -0.84 -20.92 5.88 -186.71 -1.10 -22.02 16 20 H 0.01 0.19 6.02 -2.39 -0.01 0.17 16 21 H 0.11 4.08 5.44 -2.39 -0.01 4.07 16 22 H 0.03 1.37 5.54 -2.39 -0.01 1.35 16 23 H -0.03 -1.23 6.85 -2.39 -0.02 -1.25 16 24 H 0.10 5.29 3.57 -2.39 -0.01 5.28 16 25 H 0.25 13.00 8.19 -92.71 -0.76 12.24 16 26 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 27 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.08 3.18 8.07 -2.39 -0.02 3.16 16 29 H 0.07 3.08 8.14 -2.39 -0.02 3.07 16 30 H 0.04 1.30 6.71 -2.39 -0.02 1.29 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.85 4.69 -2.38 -0.01 1.84 16 33 H 0.05 1.95 7.24 -2.39 -0.02 1.93 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.88 6.11 -2.38 -0.01 1.87 16 36 H 0.04 1.05 8.14 -2.38 -0.02 1.04 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.34 7.63 6.87 -89.69 -0.62 7.01 16 39 H 0.34 6.86 9.08 -89.70 -0.81 6.05 16 Total: -1.00 -57.15 284.71 1.12 -56.03 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.37 Total: 24.54 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 4.00 Total: -33.96 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -4.53 Total: -92.80 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -57.15 1.12 -56.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714239674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.123 kcal (2) G-P(sol) polarization free energy of solvation -57.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds