Wall clock time and date at job start Mon Mar 30 2020 03:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00283 * 2 1 4 4 C 1.46906 * 110.99888 * 123.94961 * 2 1 3 5 5 C 1.52997 * 109.46907 * 59.99949 * 4 2 1 6 6 C 1.52997 * 109.47110 * 299.99954 * 4 2 1 7 7 C 1.52996 * 109.47131 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46969 * 60.00062 * 7 6 4 9 9 N 1.46496 * 109.47421 * 179.97438 * 8 7 6 10 10 C 1.36942 * 120.00227 * 275.00599 * 9 8 7 11 11 H 1.07998 * 120.00194 * 359.97438 * 10 9 8 12 12 C 1.38815 * 119.99929 * 179.97438 * 10 9 8 13 13 N 1.31622 * 120.00192 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99710 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47109 * 89.99808 * 14 12 10 16 16 H 1.48499 * 109.46812 * 210.00075 * 14 12 10 17 17 H 1.48497 * 109.46898 * 329.99755 * 14 12 10 18 18 C 1.53002 * 109.47454 * 300.00051 * 8 7 6 19 19 C 1.52999 * 109.46897 * 179.97438 * 4 2 1 20 20 H 1.08997 * 109.47334 * 296.05250 * 1 2 3 21 21 H 1.09000 * 109.46674 * 56.05127 * 1 2 3 22 22 H 1.08995 * 109.47296 * 176.04950 * 1 2 3 23 23 H 1.09004 * 109.47457 * 183.95363 * 3 2 1 24 24 H 1.09001 * 109.46615 * 303.95014 * 3 2 1 25 25 H 1.08990 * 109.47358 * 63.94680 * 3 2 1 26 26 H 1.09000 * 109.47140 * 60.00230 * 5 4 2 27 27 H 1.09001 * 109.47230 * 179.97438 * 5 4 2 28 28 H 1.09001 * 109.47375 * 300.00212 * 5 4 2 29 29 H 1.08996 * 109.46952 * 299.99976 * 6 4 2 30 30 H 1.09001 * 109.46832 * 59.99996 * 6 4 2 31 31 H 1.09000 * 109.47380 * 300.00763 * 7 6 4 32 32 H 1.09000 * 109.47054 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46930 * 59.99996 * 8 7 6 34 34 H 0.97001 * 120.00245 * 94.99820 * 9 8 7 35 35 H 0.97000 * 119.99683 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.46698 * 299.99898 * 18 8 7 37 37 H 1.09001 * 109.47142 * 179.97438 * 18 8 7 38 38 H 1.09000 * 109.47486 * 299.99976 * 19 4 2 39 39 H 1.09001 * 109.47362 * 60.00699 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.5048 -2.2124 1.0494 6 6 1.5048 -0.1399 2.4447 7 6 2.0526 -0.9380 3.6295 8 6 3.5821 -0.9157 3.5960 9 7 4.1066 -1.6793 4.7308 10 6 4.2555 -1.0767 5.9514 11 1 3.9865 -0.0384 6.0775 12 6 4.7520 -1.8005 7.0269 13 7 5.0794 -3.0661 6.8735 14 14 4.9557 -0.9782 8.6918 15 1 3.7071 -1.1392 9.4793 16 1 6.0854 -1.6090 9.4204 17 1 5.2364 0.4671 8.4989 18 6 4.0727 -1.5417 2.2889 19 6 3.5249 -0.7437 1.1034 20 1 -0.3634 0.4513 0.9232 21 1 -0.3633 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0829 1.3432 -0.0709 24 1 1.5899 1.9162 -0.8525 25 1 1.7044 1.8724 0.9231 26 1 1.8543 -2.6584 0.1182 27 1 1.8957 -2.7809 1.8932 28 1 0.4152 -2.2287 1.0734 29 1 1.8544 0.8906 2.5076 30 1 0.4152 -0.1561 2.4687 31 1 1.7028 -1.9684 3.5664 32 1 1.7027 -0.4922 4.5607 33 1 3.9319 0.1147 3.6591 34 1 4.3485 -2.6119 4.6176 35 1 5.4267 -3.5717 7.6249 36 1 3.7229 -2.5721 2.2259 37 1 5.1624 -1.5255 2.2649 38 1 3.8740 -1.1899 0.1723 39 1 3.8748 0.2868 1.1662 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715507609.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:05 Heat of formation + Delta-G solvation = 8.363390 kcal Electronic energy + Delta-G solvation = -16784.244078 eV Core-core repulsion = 14340.756197 eV Total energy + Delta-G solvation = -2443.487881 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.90453 -36.05884 -33.39444 -31.04710 -30.48499 -29.03983 -27.63701 -25.56306 -24.07281 -22.89173 -22.05055 -20.06137 -17.97487 -16.86931 -16.21090 -14.94072 -14.83704 -14.59598 -14.27468 -13.89671 -13.48138 -13.05542 -12.84980 -12.40236 -12.01317 -11.91964 -11.89107 -11.59133 -11.52467 -11.12824 -11.05478 -10.84574 -10.65032 -10.49538 -10.39875 -10.09547 -9.81757 -9.58673 -9.52895 -8.82997 -8.12024 -6.90799 -5.73393 -3.01373 3.44772 3.49917 3.51549 4.01692 4.61862 4.91839 5.01027 5.17939 5.32895 5.34806 5.49665 5.56855 5.61504 5.68082 5.69662 5.74631 5.83630 5.89469 5.90768 5.93350 6.02376 6.08069 6.23974 6.28753 6.35111 6.42959 6.48560 6.61674 6.64642 6.78747 7.03351 7.17059 7.20812 7.24023 7.73067 8.45903 9.56622 10.16207 10.50898 11.49525 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.049594 B = 0.006172 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.451028 B = 4535.531303 C = 4650.297814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.537 5.537 3 C 0.017 3.983 4 C 0.111 3.889 5 C -0.142 4.142 6 C -0.142 4.142 7 C -0.131 4.131 8 C 0.179 3.821 9 N -0.726 5.726 10 C -0.235 4.235 11 H 0.069 0.931 12 C -0.015 4.015 13 N -0.934 5.934 14 Si 0.905 3.095 15 H -0.291 1.291 16 H -0.292 1.292 17 H -0.283 1.283 18 C -0.124 4.124 19 C -0.100 4.100 20 H 0.029 0.971 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 5.486 -13.754 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.260 5.260 3 C -0.131 4.131 4 C 0.022 3.978 5 C -0.199 4.199 6 C -0.182 4.182 7 C -0.172 4.172 8 C 0.069 3.931 9 N -0.366 5.366 10 C -0.367 4.367 11 H 0.087 0.913 12 C -0.211 4.211 13 N -0.583 5.583 14 Si 0.736 3.264 15 H -0.218 1.218 16 H -0.218 1.218 17 H -0.208 1.208 18 C -0.163 4.163 19 C -0.138 4.138 20 H 0.047 0.953 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.216 0.784 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.316 5.372 -14.045 16.722 hybrid contribution -0.212 0.576 1.744 1.848 sum -7.528 5.948 -12.301 15.600 Atomic orbital electron populations 1.22441 0.88253 1.02167 1.00153 1.62307 1.07397 1.13461 1.42856 1.22454 1.01215 0.89289 1.00143 1.21066 0.95187 0.93798 0.87770 1.21978 1.00434 0.95070 1.02400 1.22174 0.99742 0.99976 0.96279 1.22235 0.99421 0.99437 0.96075 1.20199 0.90832 0.95136 0.86906 1.42439 1.76401 1.11740 1.06001 1.19249 1.35321 0.95001 0.87115 0.91340 1.24725 1.02250 0.96005 0.98084 1.69663 1.50249 1.07602 1.30768 0.86220 0.77282 0.78378 0.84524 1.21810 1.21794 1.20831 1.21861 1.00429 0.99585 0.94429 1.21574 0.93116 1.00584 0.98575 0.95280 0.92067 0.91219 0.90966 0.92072 0.95269 0.92391 0.90911 0.93117 0.92414 0.92810 0.92327 0.92400 0.93991 0.78354 0.93580 0.91883 0.91851 0.91767 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.82 60.06 0.53 0.73 16 2 N -0.54 -6.65 4.84 -235.41 -1.14 -7.79 16 3 C 0.02 0.19 8.80 60.07 0.53 0.72 16 4 C 0.11 1.50 0.45 -131.60 -0.06 1.45 16 5 C -0.14 -1.88 7.54 37.16 0.28 -1.60 16 6 C -0.14 -2.11 4.04 -26.73 -0.11 -2.22 16 7 C -0.13 -2.39 5.23 -26.73 -0.14 -2.53 16 8 C 0.18 3.61 2.77 -67.93 -0.19 3.42 16 9 N -0.73 -18.39 5.12 -53.42 -0.27 -18.67 16 10 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 11 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 12 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 13 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 14 Si 0.90 22.63 29.55 -169.99 -5.02 17.61 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.12 -2.10 5.12 -26.70 -0.14 -2.24 16 19 C -0.10 -1.42 4.37 -26.70 -0.12 -1.54 16 20 H 0.03 0.32 6.30 -51.93 -0.33 0.00 16 21 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 22 H 0.07 0.73 6.30 -51.93 -0.33 0.41 16 23 H 0.07 0.81 6.24 -51.93 -0.32 0.48 16 24 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 25 H 0.03 0.34 6.40 -51.93 -0.33 0.01 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.06 4.81 -51.93 -0.25 0.81 16 28 H 0.05 0.62 6.40 -51.93 -0.33 0.29 16 29 H 0.06 0.87 6.49 -51.93 -0.34 0.53 16 30 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 31 H 0.06 1.09 6.43 -51.93 -0.33 0.75 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.38 10.30 7.80 -40.82 -0.32 9.99 16 35 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.06 1.06 6.43 -51.93 -0.33 0.73 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.85 6.35 -51.93 -0.33 0.52 16 LS Contribution 285.84 15.07 4.31 4.31 Total: -1.00 -29.69 285.84 -7.44 -37.13 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.38 Total: 6.29 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 0.34 Total: -11.11 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.69 Total: -54.22 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.69 -7.44 -37.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715507609.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.491 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds