Wall clock time and date at job start Mon Mar 30 2020 03:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00283 * 2 1 4 4 C 1.46906 * 110.99888 * 123.94961 * 2 1 3 5 5 C 1.52997 * 109.46907 * 59.99949 * 4 2 1 6 6 C 1.52997 * 109.47110 * 299.99954 * 4 2 1 7 7 C 1.52996 * 109.47131 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46969 * 60.00062 * 7 6 4 9 9 N 1.46496 * 109.47421 * 179.97438 * 8 7 6 10 10 C 1.36942 * 120.00227 * 275.00599 * 9 8 7 11 11 H 1.07998 * 120.00194 * 359.97438 * 10 9 8 12 12 C 1.38815 * 119.99929 * 179.97438 * 10 9 8 13 13 N 1.31622 * 120.00192 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99710 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47109 * 89.99808 * 14 12 10 16 16 H 1.48499 * 109.46812 * 210.00075 * 14 12 10 17 17 H 1.48497 * 109.46898 * 329.99755 * 14 12 10 18 18 C 1.53002 * 109.47454 * 300.00051 * 8 7 6 19 19 C 1.52999 * 109.46897 * 179.97438 * 4 2 1 20 20 H 1.08997 * 109.47334 * 296.05250 * 1 2 3 21 21 H 1.09000 * 109.46674 * 56.05127 * 1 2 3 22 22 H 1.08995 * 109.47296 * 176.04950 * 1 2 3 23 23 H 1.09004 * 109.47457 * 183.95363 * 3 2 1 24 24 H 1.09001 * 109.46615 * 303.95014 * 3 2 1 25 25 H 1.08990 * 109.47358 * 63.94680 * 3 2 1 26 26 H 1.09000 * 109.47140 * 60.00230 * 5 4 2 27 27 H 1.09001 * 109.47230 * 179.97438 * 5 4 2 28 28 H 1.09001 * 109.47375 * 300.00212 * 5 4 2 29 29 H 1.08996 * 109.46952 * 299.99976 * 6 4 2 30 30 H 1.09001 * 109.46832 * 59.99996 * 6 4 2 31 31 H 1.09000 * 109.47380 * 300.00763 * 7 6 4 32 32 H 1.09000 * 109.47054 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46930 * 59.99996 * 8 7 6 34 34 H 0.97001 * 120.00245 * 94.99820 * 9 8 7 35 35 H 0.97000 * 119.99683 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.46698 * 299.99898 * 18 8 7 37 37 H 1.09001 * 109.47142 * 179.97438 * 18 8 7 38 38 H 1.09000 * 109.47486 * 299.99976 * 19 4 2 39 39 H 1.09001 * 109.47362 * 60.00699 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.5048 -2.2124 1.0494 6 6 1.5048 -0.1399 2.4447 7 6 2.0526 -0.9380 3.6295 8 6 3.5821 -0.9157 3.5960 9 7 4.1066 -1.6793 4.7308 10 6 4.2555 -1.0767 5.9514 11 1 3.9865 -0.0384 6.0775 12 6 4.7520 -1.8005 7.0269 13 7 5.0794 -3.0661 6.8735 14 14 4.9557 -0.9782 8.6918 15 1 3.7071 -1.1392 9.4793 16 1 6.0854 -1.6090 9.4204 17 1 5.2364 0.4671 8.4989 18 6 4.0727 -1.5417 2.2889 19 6 3.5249 -0.7437 1.1034 20 1 -0.3634 0.4513 0.9232 21 1 -0.3633 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0829 1.3432 -0.0709 24 1 1.5899 1.9162 -0.8525 25 1 1.7044 1.8724 0.9231 26 1 1.8543 -2.6584 0.1182 27 1 1.8957 -2.7809 1.8932 28 1 0.4152 -2.2287 1.0734 29 1 1.8544 0.8906 2.5076 30 1 0.4152 -0.1561 2.4687 31 1 1.7028 -1.9684 3.5664 32 1 1.7027 -0.4922 4.5607 33 1 3.9319 0.1147 3.6591 34 1 4.3485 -2.6119 4.6176 35 1 5.4267 -3.5717 7.6249 36 1 3.7229 -2.5721 2.2259 37 1 5.1624 -1.5255 2.2649 38 1 3.8740 -1.1899 0.1723 39 1 3.8748 0.2868 1.1662 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715507609.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:04 Heat of formation + Delta-G solvation = -11.368208 kcal Electronic energy + Delta-G solvation = -16785.099704 eV Core-core repulsion = 14340.756197 eV Total energy + Delta-G solvation = -2444.343507 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09685 -37.51932 -35.13873 -32.79227 -31.79861 -30.43851 -28.81918 -26.84543 -25.55858 -24.37615 -23.39847 -21.57215 -19.50678 -18.65768 -17.34567 -16.75092 -15.88944 -15.73449 -15.66121 -15.35151 -15.18368 -14.55380 -14.18471 -13.66916 -13.29871 -13.20053 -13.03394 -12.96941 -12.82709 -12.66104 -12.56248 -12.33497 -12.12339 -12.00376 -11.90843 -11.68483 -11.43556 -11.18324 -11.00967 -10.77331 -9.11685 -8.99073 -7.94344 -5.22307 1.45559 1.47155 1.55535 2.55466 3.03300 3.38391 3.76509 3.79748 3.93005 4.22573 4.30735 4.33480 4.36686 4.51451 4.52952 4.56276 4.66573 4.74119 4.78753 4.84334 4.96740 4.99068 5.01144 5.06537 5.08949 5.19595 5.22953 5.26225 5.27954 5.43251 5.49478 5.57965 5.69933 6.20743 6.23726 6.28965 7.34022 8.11704 8.35047 9.29368 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.049594 B = 0.006172 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.451028 B = 4535.531303 C = 4650.297814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.540 5.540 3 C 0.015 3.985 4 C 0.115 3.885 5 C -0.139 4.139 6 C -0.132 4.132 7 C -0.120 4.120 8 C 0.175 3.825 9 N -0.738 5.738 10 C -0.238 4.238 11 H 0.071 0.929 12 C -0.076 4.076 13 N -0.970 5.970 14 Si 0.970 3.030 15 H -0.288 1.288 16 H -0.294 1.294 17 H -0.271 1.271 18 C -0.115 4.115 19 C -0.092 4.092 20 H 0.026 0.974 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.372 0.628 35 H 0.251 0.749 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 6.630 -15.061 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.262 5.262 3 C -0.133 4.133 4 C 0.026 3.974 5 C -0.197 4.197 6 C -0.171 4.171 7 C -0.161 4.161 8 C 0.067 3.933 9 N -0.378 5.378 10 C -0.370 4.370 11 H 0.089 0.911 12 C -0.268 4.268 13 N -0.621 5.621 14 Si 0.799 3.201 15 H -0.215 1.215 16 H -0.221 1.221 17 H -0.196 1.196 18 C -0.153 4.153 19 C -0.131 4.131 20 H 0.044 0.956 21 H 0.096 0.904 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.222 6.558 -15.390 18.640 hybrid contribution 0.028 0.255 2.078 2.094 sum -8.194 6.813 -13.312 17.052 Atomic orbital electron populations 1.22515 0.87139 1.02758 1.00761 1.62320 1.08423 1.13995 1.41496 1.22520 1.01320 0.88757 1.00704 1.20960 0.94650 0.94237 0.87568 1.21941 1.01099 0.94554 1.02074 1.22084 1.00291 0.99344 0.95420 1.22025 0.97777 0.99617 0.96684 1.20416 0.91911 0.94124 0.86865 1.42647 1.76842 1.11538 1.06729 1.19596 1.34017 0.95130 0.88275 0.91126 1.25522 1.02916 0.96690 1.01673 1.69817 1.51782 1.09005 1.31510 0.85186 0.76904 0.77889 0.80097 1.21505 1.22083 1.19567 1.21737 0.99917 0.99839 0.93852 1.21507 0.93659 1.00332 0.97575 0.95592 0.90368 0.90865 0.91020 0.90264 0.95773 0.91531 0.92612 0.92080 0.92383 0.91659 0.92819 0.94832 0.95018 0.79640 0.94053 0.91911 0.92712 0.90337 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.82 127.69 1.13 1.43 16 2 N -0.54 -11.73 4.84 -898.70 -4.35 -16.07 16 3 C 0.01 0.29 8.80 127.69 1.12 1.42 16 4 C 0.12 2.88 0.45 3.52 0.00 2.88 16 5 C -0.14 -3.41 7.54 71.98 0.54 -2.87 16 6 C -0.13 -3.71 4.04 30.59 0.12 -3.59 16 7 C -0.12 -4.38 5.23 30.59 0.16 -4.22 16 8 C 0.17 7.08 2.77 44.99 0.12 7.21 16 9 N -0.74 -38.17 5.12 -322.93 -1.65 -39.83 16 10 C -0.24 -13.55 9.93 84.03 0.83 -12.71 16 11 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 12 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 13 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 14 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 15 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 16 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 18 C -0.11 -3.83 5.12 30.61 0.16 -3.68 16 19 C -0.09 -2.45 4.37 30.61 0.13 -2.32 16 20 H 0.03 0.50 6.30 -2.39 -0.02 0.48 16 21 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 22 H 0.07 1.31 6.30 -2.39 -0.02 1.30 16 23 H 0.07 1.41 6.24 -2.38 -0.01 1.39 16 24 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 25 H 0.02 0.50 6.40 -2.39 -0.02 0.48 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.56 4.81 -2.39 -0.01 1.55 16 28 H 0.06 1.36 6.40 -2.39 -0.02 1.34 16 29 H 0.06 1.65 6.49 -2.39 -0.02 1.63 16 30 H 0.06 1.71 6.40 -2.39 -0.02 1.70 16 31 H 0.05 2.00 6.43 -2.39 -0.02 1.98 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 33 H 0.03 1.34 8.08 -2.38 -0.02 1.33 16 34 H 0.37 20.58 7.80 -92.71 -0.72 19.86 16 35 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.06 2.10 6.43 -2.39 -0.02 2.09 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.68 6.35 -2.39 -0.02 1.67 16 Total: -1.00 -63.03 285.84 1.41 -61.62 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.30 Total: 25.79 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 4.79 Total: -20.43 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -5.72 Total: -115.91 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -63.03 1.41 -61.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715507609.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.251 kcal (2) G-P(sol) polarization free energy of solvation -63.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds