Wall clock time and date at job start Mon Mar 30 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48555 * 110.99441 * 2 1 4 4 C 1.54379 * 104.59281 * 200.95685 * 3 2 1 5 5 C 1.54259 * 105.06007 * 23.85699 * 4 3 2 6 6 C 1.52996 * 110.32642 * 118.99630 * 5 4 3 7 7 N 1.46905 * 110.32273 * 241.10270 * 5 4 3 8 8 C 1.46901 * 110.99870 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46820 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00070 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00019 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00228 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00068 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46685 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46910 * 120.00333 * 15 13 11 18 18 H 1.48502 * 109.47120 * 240.00671 * 15 13 11 19 19 C 1.48552 * 110.99963 * 244.58112 * 2 1 3 20 20 H 1.08999 * 109.46935 * 60.12694 * 1 2 3 21 21 H 1.09000 * 109.46579 * 180.12774 * 1 2 3 22 22 H 1.09002 * 109.46979 * 300.12232 * 1 2 3 23 23 H 1.09007 * 110.41319 * 82.18287 * 3 2 1 24 24 H 1.09000 * 110.51963 * 319.78599 * 3 2 1 25 25 H 1.08997 * 110.32998 * 264.95793 * 4 3 2 26 26 H 1.09007 * 110.32189 * 142.74954 * 4 3 2 27 27 H 1.09000 * 109.47318 * 181.42658 * 6 5 4 28 28 H 1.08998 * 109.47131 * 301.42394 * 6 5 4 29 29 H 1.08995 * 109.47633 * 61.42586 * 6 5 4 30 30 H 1.00901 * 110.99869 * 56.04619 * 7 5 4 31 31 H 1.09004 * 109.47031 * 299.99620 * 8 7 5 32 32 H 1.08995 * 109.47111 * 59.99900 * 8 7 5 33 33 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 34 34 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 35 35 H 1.08993 * 109.47740 * 299.99810 * 10 9 8 36 36 H 1.09005 * 109.47573 * 59.99976 * 10 9 8 37 37 H 0.97002 * 120.00555 * 179.97438 * 14 13 11 38 38 H 1.09004 * 110.41286 * 40.25916 * 19 2 1 39 39 H 1.08997 * 110.41366 * 277.81385 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4432 1.2502 -0.5343 5 6 3.4433 -0.0538 -1.3585 6 6 3.7973 0.2398 -2.8177 7 7 4.3936 -1.0179 -0.7879 8 6 4.4052 -2.2666 -1.5617 9 6 5.4038 -3.2437 -0.9381 10 6 5.4154 -4.5444 -1.7436 11 6 6.3995 -5.5066 -1.1298 12 1 6.9602 -5.2193 -0.2526 13 6 6.5832 -6.7541 -1.6875 14 7 5.9001 -7.1042 -2.7553 15 14 7.8026 -7.9471 -0.9262 16 1 8.4374 -7.3169 0.2592 17 1 7.0917 -9.1822 -0.5084 18 1 8.8476 -8.2907 -1.9238 19 6 2.0014 -0.5953 -1.2526 20 1 -0.3633 0.5119 -0.8911 21 1 -0.3632 -1.0277 0.0023 22 1 -0.3633 0.5157 0.8889 23 1 2.0078 1.7917 1.0121 24 1 1.4104 2.0229 -0.6591 25 1 4.1483 1.1749 0.2934 26 1 3.6936 2.0997 -1.1699 27 1 3.7685 -0.6863 -3.3919 28 1 3.0774 0.9461 -3.2312 29 1 4.7980 0.6686 -2.8697 30 1 4.1877 -1.1968 0.1836 31 1 3.4093 -2.7096 -1.5514 32 1 4.6978 -2.0541 -2.5899 33 1 6.3997 -2.8009 -0.9479 34 1 5.1106 -3.4561 0.0900 35 1 4.4194 -4.9870 -1.7335 36 1 5.7083 -4.3323 -2.7720 37 1 6.0296 -7.9817 -3.1479 38 1 1.4099 -0.2713 -2.1089 39 1 2.0080 -1.6831 -1.1837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716576742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:24 Heat of formation + Delta-G solvation = -30.104016 kcal Electronic energy + Delta-G solvation = -15946.016743 eV Core-core repulsion = 13500.860791 eV Total energy + Delta-G solvation = -2445.155953 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68979 -37.21032 -35.52112 -33.78788 -31.65535 -30.16390 -28.13235 -27.75947 -25.46844 -24.13060 -22.38171 -21.56447 -20.21081 -18.46326 -17.18619 -16.90745 -16.49275 -16.21807 -15.59455 -15.35153 -14.98567 -14.38101 -14.20489 -14.05942 -13.56956 -13.55834 -13.02435 -12.87893 -12.77223 -12.69216 -12.47287 -12.37092 -12.14959 -12.09187 -12.01754 -11.60874 -11.37496 -11.28785 -11.04166 -10.55471 -9.50367 -9.30535 -8.19846 -6.30834 1.40314 1.40637 1.54525 2.41571 3.06092 3.13236 3.19887 3.66205 3.74843 4.10566 4.22734 4.27449 4.31722 4.40565 4.46657 4.54828 4.61110 4.64789 4.75314 4.79248 4.84896 4.92314 4.95072 5.01409 5.14060 5.18987 5.22483 5.30450 5.32786 5.53411 5.75661 5.78005 5.86355 6.01232 6.18559 6.30334 6.52236 6.86127 7.38461 8.92379 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046210 B = 0.004630 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.789452 B = 6046.578496 C = 6174.705900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.532 5.532 3 C 0.033 3.967 4 C -0.110 4.110 5 C 0.106 3.894 6 C -0.136 4.136 7 N -0.671 5.671 8 C 0.070 3.930 9 C -0.092 4.092 10 C 0.026 3.974 11 C -0.542 4.542 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.002 3.998 20 H 0.034 0.966 21 H 0.062 0.938 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.343 0.657 31 H 0.020 0.980 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.046 0.954 35 H -0.011 1.011 36 H -0.008 1.008 37 H 0.264 0.736 38 H 0.052 0.948 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.014 18.159 3.682 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.256 5.256 3 C -0.095 4.095 4 C -0.148 4.148 5 C 0.014 3.986 6 C -0.194 4.194 7 N -0.302 5.302 8 C -0.059 4.059 9 C -0.130 4.130 10 C -0.011 4.011 11 C -0.580 4.580 12 H 0.077 0.923 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.128 4.128 20 H 0.053 0.947 21 H 0.081 0.919 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.162 0.838 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.007 0.993 36 H 0.010 0.990 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.343 18.003 3.725 20.189 hybrid contribution -0.757 -1.102 -0.423 1.402 sum -9.100 16.901 3.302 19.477 Atomic orbital electron populations 1.22531 0.87137 1.02223 1.01561 1.65331 1.09247 1.16426 1.34610 1.23199 0.95028 0.89356 1.01916 1.22426 0.96590 0.95932 0.99831 1.21772 0.88181 0.92929 0.95674 1.21888 1.02461 1.01502 0.93548 1.60758 1.51720 1.11278 1.06405 1.21885 0.96935 0.89177 0.97899 1.21364 0.98525 0.94561 0.98517 1.18961 0.94977 0.92590 0.94611 1.21732 1.23392 1.00020 1.12892 0.92317 1.25995 0.98152 1.00294 0.95426 1.70105 1.43058 1.21451 1.22866 0.85382 0.78550 0.78357 0.78660 1.18627 1.20300 1.20222 1.23904 0.97262 0.99904 0.91759 0.94713 0.91917 0.90020 0.89169 0.92760 0.90460 0.89187 0.93540 0.90667 0.91560 0.83811 0.96162 0.91608 0.92895 0.93531 0.99291 0.98987 0.92769 0.92944 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.53 127.69 1.22 1.47 16 2 N -0.53 -11.78 5.66 -907.62 -5.14 -16.91 16 3 C 0.03 0.58 6.49 86.45 0.56 1.14 16 4 C -0.11 -2.11 6.39 31.49 0.20 -1.90 16 5 C 0.11 2.56 0.94 4.42 0.00 2.57 16 6 C -0.14 -3.09 7.96 71.98 0.57 -2.51 16 7 N -0.67 -19.95 6.05 -465.74 -2.82 -22.77 16 8 C 0.07 2.51 5.01 86.30 0.43 2.95 16 9 C -0.09 -3.98 5.41 30.59 0.17 -3.82 16 10 C 0.03 1.44 4.97 29.85 0.15 1.59 16 11 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16 12 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 15 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 16 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 19 C 0.00 0.04 5.53 86.45 0.48 0.52 16 20 H 0.03 0.56 7.97 -2.39 -0.02 0.55 16 21 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 23 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.05 0.83 7.98 -2.39 -0.02 0.81 16 25 H 0.08 1.58 7.94 -2.39 -0.02 1.57 16 26 H 0.09 1.43 7.71 -2.38 -0.02 1.41 16 27 H 0.05 1.19 6.41 -2.39 -0.02 1.18 16 28 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.34 10.26 8.72 -89.69 -0.78 9.48 16 31 H 0.02 0.75 6.21 -2.39 -0.01 0.74 16 32 H 0.07 2.41 6.32 -2.39 -0.02 2.39 16 33 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16 36 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.05 1.19 7.61 -2.38 -0.02 1.17 16 39 H 0.06 1.84 6.02 -2.39 -0.01 1.83 16 Total: -1.00 -64.76 304.85 -0.95 -65.71 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.22 Total: 13.83 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 4.48 Total: -29.35 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -7.67 Total: -97.46 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.76 -0.95 -65.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716576742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.606 kcal (2) G-P(sol) polarization free energy of solvation -64.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds