Wall clock time and date at job start Mon Mar 30 2020 03:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48535 * 111.00032 * 2 1 4 4 C 1.54934 * 103.22852 * 200.27869 * 3 2 1 5 5 C 1.54603 * 102.91972 * 37.41176 * 4 3 2 6 6 C 1.52998 * 110.38785 * 219.08335 * 5 4 3 7 7 N 1.46895 * 110.30718 * 96.96130 * 5 4 3 8 8 C 1.46902 * 110.99875 * 182.82781 * 7 5 4 9 9 C 1.52997 * 109.47070 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.46867 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47038 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.47896 * 111.00052 * 242.60273 * 2 1 3 20 20 H 1.09000 * 109.46638 * 177.39841 * 1 2 3 21 21 H 1.08998 * 109.46994 * 297.39846 * 1 2 3 22 22 H 1.09000 * 109.46969 * 57.39734 * 1 2 3 23 23 H 1.09003 * 110.66493 * 318.71465 * 3 2 1 24 24 H 1.09002 * 110.66995 * 81.67184 * 3 2 1 25 25 H 1.09001 * 110.72370 * 279.05556 * 4 3 2 26 26 H 1.08996 * 110.72864 * 155.76802 * 4 3 2 27 27 H 1.08997 * 109.47679 * 298.55282 * 6 5 4 28 28 H 1.09003 * 109.47060 * 58.55975 * 6 5 4 29 29 H 1.09006 * 109.47002 * 178.55332 * 6 5 4 30 30 H 1.00901 * 111.00172 * 306.77962 * 7 5 4 31 31 H 1.08996 * 109.46854 * 59.99830 * 8 7 5 32 32 H 1.09004 * 109.47013 * 299.99824 * 8 7 5 33 33 H 1.08996 * 109.47435 * 60.00168 * 9 8 7 34 34 H 1.08996 * 109.47029 * 300.00046 * 9 8 7 35 35 H 1.09003 * 109.46825 * 60.00325 * 10 9 8 36 36 H 1.08996 * 109.47396 * 299.99898 * 10 9 8 37 37 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 38 38 H 1.08996 * 109.92162 * 26.48978 * 19 2 1 39 39 H 1.08998 * 109.91628 * 265.19455 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2107 -0.5227 5 6 3.2983 0.1053 -1.5930 6 6 4.4893 -0.8536 -1.5405 7 7 3.1843 0.7026 -2.9302 8 6 2.9729 -0.3312 -3.9523 9 6 2.8599 0.3277 -5.3284 10 6 2.6404 -0.7491 -6.3930 11 6 2.5297 -0.1002 -7.7486 12 1 2.6076 0.9731 -7.8416 13 6 2.3279 -0.8764 -8.8701 14 7 2.2325 -2.1832 -8.7569 15 14 2.1914 -0.0720 -10.5505 16 1 0.7701 0.2579 -10.8274 17 1 2.6939 -1.0068 -11.5891 18 1 3.0014 1.1725 -10.5709 19 6 1.9991 -0.6353 -1.2259 20 1 -0.3632 -1.0266 -0.0466 21 1 -0.3633 0.4729 0.9124 22 1 -0.3633 0.5537 -0.8657 23 1 1.4237 2.0205 -0.6729 24 1 2.0014 1.7988 1.0091 25 1 4.1116 0.8836 0.2788 26 1 3.8124 2.1351 -0.9716 27 1 5.4069 -0.3055 -1.7539 28 1 4.5542 -1.2983 -0.5474 29 1 4.3552 -1.6405 -2.2828 30 1 2.4486 1.3927 -2.9565 31 1 2.0547 -0.8761 -3.7334 32 1 3.8154 -1.0229 -3.9491 33 1 3.7784 0.8723 -5.5471 34 1 2.0177 1.0196 -5.3319 35 1 1.7220 -1.2941 -6.1745 36 1 3.4829 -1.4407 -6.3894 37 1 2.3037 -2.6008 -7.8844 38 1 1.2759 -0.5403 -2.0358 39 1 2.2123 -1.6873 -1.0364 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716576744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:27 Heat of formation + Delta-G solvation = -13.680605 kcal Electronic energy + Delta-G solvation = -16020.276030 eV Core-core repulsion = 13575.832249 eV Total energy + Delta-G solvation = -2444.443780 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.82915 -35.98687 -34.02481 -32.22822 -30.22555 -29.20227 -27.07151 -25.79753 -24.24763 -22.51163 -21.42454 -20.29042 -19.29153 -16.72475 -16.23266 -15.96229 -15.21333 -14.34929 -14.19991 -13.91995 -13.70691 -13.47010 -13.04846 -12.80616 -12.77199 -11.95483 -11.80103 -11.70785 -11.57477 -11.48915 -11.33424 -10.98602 -10.77263 -10.59992 -10.50040 -10.11227 -9.82796 -9.71001 -8.68957 -8.51359 -8.30251 -8.20110 -6.34063 -4.02565 3.44553 3.48661 3.64486 3.84625 4.27561 4.52226 4.54020 4.58240 4.91599 5.10468 5.15249 5.24624 5.29695 5.43071 5.44567 5.59943 5.65923 5.68147 5.74031 5.76786 5.84412 5.88398 5.91517 6.08068 6.20944 6.28266 6.58100 6.58340 6.71331 6.80783 6.97974 7.28403 7.44425 7.51924 7.59584 8.25549 8.49605 8.91426 9.69783 11.06676 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.043722 B = 0.004745 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.257831 B = 5899.766144 C = 6035.938888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.029 3.971 4 C -0.113 4.113 5 C 0.103 3.897 6 C -0.133 4.133 7 N -0.675 5.675 8 C 0.054 3.946 9 C -0.099 4.099 10 C 0.009 3.991 11 C -0.600 4.600 12 H 0.048 0.952 13 C 0.013 3.987 14 N -0.915 5.915 15 Si 1.072 2.928 16 H -0.288 1.288 17 H -0.284 1.284 18 H -0.288 1.288 19 C 0.005 3.995 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.027 0.973 23 H 0.043 0.957 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.335 0.665 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.003 0.997 36 H 0.007 0.993 37 H 0.268 0.732 38 H 0.049 0.951 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.096 5.326 17.887 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.098 4.098 4 C -0.152 4.152 5 C 0.011 3.989 6 C -0.191 4.191 7 N -0.306 5.306 8 C -0.075 4.075 9 C -0.138 4.138 10 C -0.028 4.028 11 C -0.638 4.638 12 H 0.067 0.933 13 C -0.190 4.190 14 N -0.552 5.552 15 Si 0.900 3.100 16 H -0.215 1.215 17 H -0.210 1.210 18 H -0.215 1.215 19 C -0.125 4.125 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.022 0.978 36 H 0.025 0.975 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.523 4.748 16.637 17.309 hybrid contribution -1.201 0.461 1.075 1.676 sum -0.678 5.209 17.712 18.475 Atomic orbital electron populations 1.22523 0.88068 1.02054 1.00773 1.64735 1.07954 1.14920 1.36863 1.23301 0.95554 0.89949 1.01024 1.22613 0.96062 0.98995 0.97483 1.21779 0.93939 0.93847 0.89349 1.21825 0.97265 0.98491 1.01499 1.60759 1.51514 1.15735 1.02557 1.22212 0.99427 0.93835 0.91985 1.21483 1.00783 0.99261 0.92227 1.19191 0.95632 0.94106 0.93895 1.22089 1.54087 0.94911 0.92761 0.93322 1.25863 0.93874 0.95562 1.03727 1.70755 1.46798 1.09861 1.27743 0.83511 0.76571 0.74870 0.75045 1.21520 1.20981 1.21463 1.23798 0.97264 1.00343 0.91122 0.91379 0.91336 0.95396 0.93825 0.90056 0.90211 0.89920 0.91725 0.92182 0.92259 0.84702 0.95731 0.91036 0.92369 0.93699 0.97830 0.97461 0.92155 0.93297 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.40 60.07 0.56 0.72 16 2 N -0.52 -6.07 5.55 -238.72 -1.33 -7.40 16 3 C 0.03 0.30 6.56 -1.90 -0.01 0.29 16 4 C -0.11 -1.21 6.26 -24.87 -0.16 -1.36 16 5 C 0.10 1.29 0.88 -130.25 -0.11 1.18 16 6 C -0.13 -1.62 8.01 37.16 0.30 -1.32 16 7 N -0.68 -9.91 6.05 -98.59 -0.60 -10.50 16 8 C 0.05 0.94 5.00 -3.82 -0.02 0.92 16 9 C -0.10 -2.11 5.41 -26.73 -0.14 -2.26 16 10 C 0.01 0.24 4.28 -27.88 -0.12 0.12 16 11 C -0.60 -17.57 9.11 -34.44 -0.31 -17.89 16 12 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 13 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 14 N -0.92 -28.60 13.65 55.43 0.76 -27.85 16 15 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.00 0.06 5.50 -2.76 -0.02 0.04 16 20 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.03 0.29 8.00 -51.93 -0.42 -0.12 16 23 H 0.04 0.46 7.96 -51.93 -0.41 0.04 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 26 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 30 H 0.34 4.77 8.71 -39.29 -0.34 4.43 16 31 H 0.02 0.43 6.45 -51.93 -0.33 0.10 16 32 H 0.07 1.27 6.37 -51.93 -0.33 0.94 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.00 0.09 8.01 -51.93 -0.42 -0.32 16 36 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 37 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 38 H 0.05 0.69 6.13 -51.93 -0.32 0.37 16 39 H 0.08 1.04 7.68 -51.93 -0.40 0.64 16 LS Contribution 304.02 15.07 4.58 4.58 Total: -1.00 -30.87 304.02 -8.80 -39.67 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.00 Total: 0.03 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -0.13 Total: -19.27 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -1.17 Total: -45.75 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.87 -8.80 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716576744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.990 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds