Wall clock time and date at job start Mon Mar 30 2020 03:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47295 * 2 1 4 4 C 1.53004 * 109.46852 * 240.00273 * 2 1 3 5 5 N 1.46900 * 109.47081 * 120.00047 * 2 1 3 6 6 C 1.46902 * 110.99782 * 60.00047 * 5 2 1 7 7 C 1.53004 * 109.47032 * 179.97438 * 6 5 2 8 8 H 1.09004 * 110.88351 * 57.42753 * 7 6 5 9 9 C 1.55154 * 111.00250 * 181.34719 * 7 6 5 10 10 C 1.54339 * 103.01885 * 153.38358 * 9 7 6 11 11 N 1.47024 * 107.26371 * 338.13833 * 10 9 7 12 12 C 1.36938 * 125.65062 * 178.84880 * 11 10 9 13 13 H 1.07999 * 120.00325 * 179.69247 * 12 11 10 14 14 C 1.38815 * 119.99817 * 359.69893 * 12 11 10 15 15 N 1.31621 * 119.99673 * 359.71804 * 14 12 11 16 16 Si 1.86795 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47071 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47211 * 119.99797 * 16 14 12 19 19 H 1.48493 * 109.47327 * 239.99664 * 16 14 12 20 20 C 1.47424 * 108.70266 * 358.58822 * 11 10 9 21 21 H 1.09007 * 109.47094 * 300.00444 * 1 2 3 22 22 H 1.09002 * 109.47055 * 59.99692 * 1 2 3 23 23 H 1.09002 * 109.47521 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46964 * 179.97438 * 3 2 1 25 25 H 1.09005 * 109.46936 * 300.00477 * 3 2 1 26 26 H 1.08998 * 109.46969 * 60.00107 * 3 2 1 27 27 H 1.09000 * 109.46589 * 299.99542 * 4 2 1 28 28 H 1.08993 * 109.47396 * 59.99960 * 4 2 1 29 29 H 1.09005 * 109.46693 * 180.02562 * 4 2 1 30 30 H 1.00900 * 110.99918 * 296.04525 * 5 2 1 31 31 H 1.08996 * 109.47388 * 59.99670 * 6 5 2 32 32 H 1.09001 * 109.46892 * 300.00021 * 6 5 2 33 33 H 1.08996 * 110.72181 * 271.93507 * 9 7 6 34 34 H 1.09003 * 110.72384 * 35.21778 * 9 7 6 35 35 H 1.09002 * 109.99054 * 218.67359 * 10 9 7 36 36 H 1.08994 * 109.78097 * 97.49815 * 10 9 7 37 37 H 0.97000 * 120.00043 * 180.02562 * 15 14 12 38 38 H 1.09005 * 110.36729 * 143.19291 * 20 11 10 39 39 H 1.09001 * 110.37054 * 265.51268 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 1.5486 -2.0835 1.2333 7 6 2.0782 -2.7708 2.4936 8 1 1.7656 -2.2340 3.3893 9 6 1.6288 -4.2548 2.5483 10 6 2.7331 -4.9214 3.3957 11 7 3.9218 -4.0597 3.3192 12 6 5.1142 -4.2865 3.9533 13 1 5.9326 -3.5929 3.8288 14 6 5.2710 -5.4081 4.7560 15 7 4.2719 -6.2506 4.9120 16 14 6.8977 -5.7180 5.6204 17 1 7.8502 -4.6283 5.2882 18 1 6.6789 -5.7543 7.0888 19 1 7.4573 -7.0180 5.1710 20 6 3.6197 -2.9143 2.4416 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2492 28 1 1.6766 -0.2074 -2.1392 29 1 3.1300 -0.7216 -1.2491 30 1 1.7502 -0.1990 2.0372 31 1 1.9120 -2.6118 0.3519 32 1 0.4587 -2.0979 1.2418 33 1 0.6579 -4.3460 3.0353 34 1 1.6018 -4.6868 1.5479 35 1 2.9646 -5.9087 2.9959 36 1 2.4029 -5.0065 4.4310 37 1 4.3813 -7.0342 5.4732 38 1 4.0978 -2.0105 2.8194 39 1 3.9474 -3.1202 1.4227 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719039654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:02 Heat of formation + Delta-G solvation = 12.736680 kcal Electronic energy + Delta-G solvation = -16297.184733 eV Core-core repulsion = 13853.886492 eV Total energy + Delta-G solvation = -2443.298241 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.63815 -36.97868 -33.15095 -31.30675 -29.18801 -27.63371 -27.40081 -27.24002 -24.94118 -22.87718 -19.97125 -19.51705 -19.09638 -16.71494 -15.51448 -15.22867 -14.99126 -14.48040 -14.14072 -13.68477 -13.46937 -12.96446 -12.39024 -12.14439 -12.10203 -11.91613 -11.82195 -11.63564 -11.45111 -11.10953 -11.02157 -10.76338 -10.75527 -10.55971 -10.05302 -9.93771 -9.74648 -9.67007 -9.51817 -8.50041 -8.18160 -6.68881 -5.60640 -2.92530 3.46087 3.51475 3.54146 4.22329 4.59638 4.79311 4.89673 5.12392 5.31200 5.45945 5.50071 5.55141 5.60501 5.65098 5.71589 5.73835 5.81060 5.84385 5.88486 5.98393 6.15546 6.16497 6.19129 6.28140 6.32196 6.54544 6.65773 6.75588 6.96664 7.16797 7.27674 7.57388 7.68282 7.74843 7.93210 8.38370 9.34255 9.95523 10.63032 11.51561 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.048415 B = 0.005615 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.197288 B = 4985.483109 C = 5328.784885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 C -0.138 4.138 4 C -0.140 4.140 5 N -0.675 5.675 6 C 0.069 3.931 7 C -0.101 4.101 8 H 0.068 0.932 9 C -0.139 4.139 10 C 0.178 3.822 11 N -0.611 5.611 12 C -0.221 4.221 13 H 0.077 0.923 14 C -0.013 4.013 15 N -0.925 5.925 16 Si 0.910 3.090 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C 0.155 3.845 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.338 0.662 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.044 0.956 37 H 0.250 0.750 38 H 0.039 0.961 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 11.582 -9.756 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.012 3.988 3 C -0.196 4.196 4 C -0.197 4.197 5 N -0.306 5.306 6 C -0.060 4.060 7 C -0.121 4.121 8 H 0.087 0.913 9 C -0.178 4.178 10 C 0.053 3.947 11 N -0.337 5.337 12 C -0.349 4.349 13 H 0.095 0.905 14 C -0.208 4.208 15 N -0.574 5.574 16 Si 0.741 3.259 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.219 1.219 20 C 0.029 3.971 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -7.500 11.271 -9.896 16.769 hybrid contribution -0.199 -0.169 0.753 0.797 sum -7.699 11.102 -9.142 16.313 Atomic orbital electron populations 1.22575 0.97625 1.02101 1.01782 1.20932 0.91774 0.94250 0.91832 1.21815 1.02056 0.94471 1.01209 1.21876 1.02082 1.00114 0.95639 1.60638 1.63248 1.02732 1.03946 1.22030 0.96346 0.88627 0.99013 1.22323 0.98197 0.95481 0.96050 0.91337 1.22884 0.99506 0.95060 1.00334 1.21103 0.83910 0.92703 0.96945 1.44572 1.11242 1.23477 1.54396 1.19140 0.89084 1.05752 1.20948 0.90476 1.24790 0.97841 0.97562 1.00645 1.69987 1.29906 1.14475 1.42988 0.86059 0.83033 0.77642 0.79185 1.20541 1.21885 1.21886 1.21398 0.91433 0.90802 0.93452 0.92867 0.92483 0.92241 0.91690 0.92568 0.92938 0.92506 0.92825 0.91701 0.84376 0.90854 0.95520 0.92592 0.92719 0.94298 0.93800 0.94004 0.94271 0.96602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 8.23 37.16 0.31 -1.49 16 2 C 0.10 1.13 0.97 -131.60 -0.13 1.00 16 3 C -0.14 -1.34 8.73 37.16 0.32 -1.01 16 4 C -0.14 -1.53 8.24 37.16 0.31 -1.22 16 5 N -0.67 -8.86 5.91 -99.96 -0.59 -9.45 16 6 C 0.07 0.99 4.35 -3.82 -0.02 0.98 16 7 C -0.10 -1.81 3.23 -88.47 -0.29 -2.10 16 8 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 9 C -0.14 -2.69 6.42 -24.89 -0.16 -2.85 16 10 C 0.18 4.53 5.38 -3.05 -0.02 4.51 16 11 N -0.61 -16.39 3.39 -170.06 -0.58 -16.97 16 12 C -0.22 -6.43 10.28 -15.06 -0.15 -6.58 16 13 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 14 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 15 N -0.92 -28.16 10.31 55.49 0.57 -27.58 16 16 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 20 C 0.16 3.41 6.53 -2.53 -0.02 3.39 16 21 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.62 6.41 -51.93 -0.33 0.29 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.65 6.40 -51.93 -0.33 0.32 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.34 4.25 8.72 -39.29 -0.34 3.91 16 31 H 0.07 1.10 6.26 -51.93 -0.33 0.78 16 32 H 0.03 0.36 6.30 -51.93 -0.33 0.03 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 35 H 0.04 1.09 7.53 -51.93 -0.39 0.70 16 36 H 0.04 1.23 7.36 -51.93 -0.38 0.84 16 37 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 LS Contribution 300.91 15.07 4.53 4.53 Total: -1.00 -30.80 300.91 -8.06 -38.86 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.04 Total: -1.33 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 0.06 Total: -5.85 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.60 Total: -54.01 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.80 -8.06 -38.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719039654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.593 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds