Wall clock time and date at job start Mon Mar 30 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 O 1.42905 * 109.47264 * 120.00167 * 2 1 3 5 5 C 1.42896 * 113.99706 * 270.00308 * 4 2 1 6 6 C 1.53004 * 109.46849 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47244 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99663 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00149 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99837 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00168 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47057 * 89.99651 * 11 9 7 13 13 H 1.48498 * 109.46963 * 209.99784 * 11 9 7 14 14 H 1.48501 * 109.47006 * 330.00069 * 11 9 7 15 15 C 1.53005 * 109.47452 * 240.00076 * 2 1 3 16 16 C 1.53002 * 109.46982 * 300.00142 * 15 2 1 17 17 C 1.53000 * 109.46911 * 179.97438 * 16 15 2 18 18 C 1.53002 * 109.46806 * 59.99917 * 17 16 15 19 19 C 1.52989 * 109.47566 * 299.99953 * 18 17 16 20 20 C 1.52997 * 109.47201 * 59.99856 * 19 18 17 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47303 * 299.99429 * 1 2 3 23 23 H 1.09002 * 109.47153 * 59.99916 * 1 2 3 24 24 H 1.09000 * 109.47446 * 299.99751 * 5 4 2 25 25 H 1.09000 * 109.47268 * 60.00033 * 5 4 2 26 26 H 1.09000 * 109.47055 * 300.00189 * 6 5 4 27 27 H 1.09000 * 109.46997 * 60.00065 * 6 5 4 28 28 H 0.97003 * 120.00096 * 180.02562 * 10 9 7 29 29 H 1.09002 * 109.46935 * 59.99874 * 15 2 1 30 30 H 1.08992 * 109.47060 * 299.99649 * 16 15 2 31 31 H 1.09004 * 109.47059 * 60.00133 * 16 15 2 32 32 H 1.09002 * 109.47398 * 299.99972 * 17 16 15 33 33 H 1.09001 * 109.47194 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.47248 * 179.97438 * 18 17 16 35 35 H 1.09002 * 109.46838 * 60.00357 * 18 17 16 36 36 H 1.09002 * 109.47371 * 300.00077 * 19 18 17 37 37 H 1.09000 * 109.47424 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47375 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.47497 * 60.00054 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7079 -0.6409 3.4792 7 6 2.9116 0.2623 4.6683 8 1 2.7003 1.3182 4.5867 9 6 3.3685 -0.2593 5.8599 10 7 3.6262 -1.5452 5.9590 11 14 3.6217 0.8603 7.3336 12 1 2.3687 0.9236 8.1281 13 1 4.7179 0.3243 8.1799 14 1 3.9796 2.2230 6.8643 15 6 2.0401 -0.7212 -1.2493 16 6 1.5301 -2.1638 -1.2493 17 6 2.0396 -2.8848 -2.4988 18 6 3.5696 -2.8847 -2.4993 19 6 4.0796 -1.4423 -2.4993 20 6 3.5700 -0.7212 -1.2498 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.9319 0.9513 2.0451 25 1 1.2537 0.6545 2.5588 26 1 1.9757 -1.4091 3.7280 27 1 3.6541 -1.1129 3.2147 28 1 3.9474 -1.9123 6.7975 29 1 1.6767 -0.2074 -2.1393 30 1 1.8934 -2.6776 -0.3594 31 1 0.4400 -2.1637 -1.2494 32 1 1.6760 -2.3708 -3.3887 33 1 1.6767 -3.9126 -2.4987 34 1 3.9328 -3.3987 -3.3893 35 1 3.9332 -3.3987 -1.6096 36 1 3.7160 -0.9283 -3.3890 37 1 5.1696 -1.4423 -2.5001 38 1 3.9330 0.3066 -1.2499 39 1 3.9336 -1.2352 -0.3599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719665995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:51 Heat of formation + Delta-G solvation = -94.367017 kcal Electronic energy + Delta-G solvation = -16157.309237 eV Core-core repulsion = 13677.073880 eV Total energy + Delta-G solvation = -2480.235357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.10458 -36.79529 -33.44350 -32.25593 -30.63923 -29.54621 -28.59711 -24.66421 -23.46819 -22.31506 -20.80128 -20.39424 -19.40814 -16.55709 -15.66958 -15.41857 -14.76404 -14.56275 -14.20918 -13.97223 -13.73296 -13.22585 -12.79041 -12.46272 -12.29728 -11.99540 -11.88127 -11.54621 -11.15274 -11.00147 -10.98790 -10.90877 -10.65928 -10.44121 -10.31854 -10.24569 -9.80594 -9.72108 -9.41187 -9.16682 -8.74988 -8.32971 -6.01304 -4.04673 3.31794 3.37631 3.40887 4.32213 4.55442 4.79061 4.83469 4.90896 5.26615 5.34770 5.36517 5.39443 5.51064 5.59044 5.67936 5.68733 5.76123 5.84004 5.86739 5.96970 6.09012 6.15162 6.27259 6.28662 6.31966 6.36863 6.37707 6.47480 6.49705 6.60747 6.75501 6.95682 7.60614 7.83079 7.88463 8.18308 8.39741 9.02157 9.58956 11.10375 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.038817 B = 0.005330 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.154301 B = 5251.733013 C = 5524.333899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 H 0.051 0.949 4 O -0.379 6.379 5 C 0.069 3.931 6 C 0.026 3.974 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.895 3.105 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C -0.078 4.078 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.115 4.115 21 H 0.064 0.936 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.032 0.968 25 H 0.032 0.968 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.261 0.739 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 0.508 -16.701 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.028 3.972 3 H 0.069 0.931 4 O -0.299 6.299 5 C -0.006 4.006 6 C -0.011 4.011 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.143 4.143 10 N -0.530 5.530 11 Si 0.723 3.277 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C -0.097 4.097 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.152 4.152 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.860 0.176 -16.565 16.811 hybrid contribution 0.055 0.913 0.895 1.279 sum -2.806 1.089 -15.670 15.956 Atomic orbital electron populations 1.22325 0.96912 1.02574 1.01391 1.21984 0.92920 0.95343 0.86954 0.93076 1.87955 1.86098 1.36006 1.19841 1.22865 0.97786 0.93571 0.86417 1.19048 0.96978 0.95502 0.89550 1.21070 1.44780 0.94544 0.95749 0.92646 1.24987 0.95390 0.95071 0.98811 1.69983 1.45209 1.11655 1.26189 0.86545 0.77859 0.80784 0.82525 1.20590 1.21122 1.19849 1.21229 0.95864 0.96505 0.96061 1.21560 0.99918 0.95188 0.98335 1.21543 0.95673 1.00062 0.98286 1.21536 0.95861 0.96843 1.01535 1.21513 0.99943 0.95837 0.98135 1.21539 0.94884 1.00217 0.98593 0.91687 0.92542 0.92600 0.94970 0.95005 0.95870 0.95841 0.92889 0.91197 0.90617 0.92163 0.92629 0.92403 0.92692 0.91727 0.92624 0.92336 0.92596 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.18 37.16 0.34 -2.07 16 2 C 0.09 1.34 2.45 -26.73 -0.07 1.28 16 3 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 4 O -0.38 -7.58 8.64 -35.23 -0.30 -7.89 16 5 C 0.07 1.54 5.69 37.16 0.21 1.75 16 6 C 0.03 0.72 5.34 -27.88 -0.15 0.57 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 11 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 C -0.08 -1.04 2.08 -90.62 -0.19 -1.23 16 16 C -0.11 -1.48 4.71 -26.73 -0.13 -1.60 16 17 C -0.12 -1.31 5.92 -26.73 -0.16 -1.46 16 18 C -0.12 -1.34 5.92 -26.74 -0.16 -1.50 16 19 C -0.12 -1.32 5.92 -26.74 -0.16 -1.48 16 20 C -0.11 -1.56 5.06 -26.73 -0.14 -1.69 16 21 H 0.06 0.90 6.43 -51.93 -0.33 0.57 16 22 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 25 H 0.03 0.69 7.87 -51.93 -0.41 0.28 16 26 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.19 7.68 -51.93 -0.40 0.79 16 31 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.25 7.68 -51.93 -0.40 0.85 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -29.99 305.07 -8.29 -38.28 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -7.30 Total: -4.03 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -1.00 Total: -21.24 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.30 Total: -7.89 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.99 -8.29 -38.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719665995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.089 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds