Wall clock time and date at job start Mon Mar 30 2020 03:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 110.34902 * 2 1 4 4 C 1.54459 * 110.45609 * 237.66343 * 2 1 3 5 5 N 1.47908 * 107.10570 * 242.33456 * 4 2 1 6 6 C 1.46898 * 110.99908 * 214.17677 * 5 4 2 7 7 C 1.53002 * 109.47129 * 187.26726 * 6 5 4 8 8 C 1.53000 * 109.46863 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46956 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00058 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00250 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99857 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00191 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47047 * 89.99895 * 13 11 9 15 15 H 1.48499 * 109.47120 * 210.00147 * 13 11 9 16 16 H 1.48500 * 109.47065 * 330.00050 * 13 11 9 17 17 C 1.48529 * 105.81635 * 334.68650 * 5 4 2 18 18 C 1.54600 * 110.30622 * 122.13873 * 2 1 3 19 19 H 1.09002 * 110.72660 * 22.51602 * 18 2 1 20 20 N 1.46905 * 110.72454 * 259.40933 * 18 2 1 21 21 H 1.09004 * 109.47165 * 297.86021 * 1 2 3 22 22 H 1.09001 * 109.47240 * 57.86299 * 1 2 3 23 23 H 1.09007 * 109.47363 * 177.86106 * 1 2 3 24 24 H 1.09005 * 109.46437 * 182.14004 * 3 2 1 25 25 H 1.09002 * 109.46983 * 302.13409 * 3 2 1 26 26 H 1.08998 * 109.47643 * 62.14677 * 3 2 1 27 27 H 1.09001 * 109.87711 * 122.97550 * 4 2 1 28 28 H 1.09000 * 110.07890 * 1.79943 * 4 2 1 29 29 H 1.09002 * 109.47151 * 307.26871 * 6 5 4 30 30 H 1.09002 * 109.47286 * 67.26785 * 6 5 4 31 31 H 1.08993 * 109.47437 * 300.00029 * 7 6 5 32 32 H 1.08993 * 109.46966 * 60.00092 * 7 6 5 33 33 H 1.09002 * 109.47352 * 300.00105 * 8 7 6 34 34 H 1.09002 * 109.47352 * 60.00182 * 8 7 6 35 35 H 0.97004 * 120.00067 * 180.02562 * 12 11 9 36 36 H 1.08997 * 110.67035 * 280.77032 * 17 5 4 37 37 H 1.09005 * 110.66284 * 157.64303 * 17 5 4 38 38 H 1.00901 * 110.99941 * 182.45162 * 20 18 2 39 39 H 1.00905 * 110.99757 * 306.41166 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4345 0.0000 4 6 2.0698 -0.7741 -1.2228 5 7 2.8368 -1.9273 -0.7036 6 6 3.9829 -2.2306 -1.5710 7 6 4.6430 -3.5309 -1.1079 8 6 5.8363 -3.8471 -2.0117 9 6 6.4861 -5.1282 -1.5560 10 1 6.0875 -5.6635 -0.7068 11 6 7.5887 -5.6175 -2.2236 12 7 8.0738 -4.9659 -3.2578 13 14 8.3937 -7.2058 -1.6590 14 1 7.7680 -8.3547 -2.3616 15 1 9.8446 -7.1642 -1.9729 16 1 8.2085 -7.3610 -0.1938 17 6 3.2876 -1.5346 0.6560 18 6 2.0665 -0.7713 1.2277 19 1 1.3172 -1.4682 1.6031 20 7 2.4838 0.1596 2.2848 21 1 -0.3634 0.4803 0.9086 22 1 -0.3634 0.5467 -0.8702 23 1 -0.3634 -1.0270 -0.0384 24 1 3.1513 1.4179 -0.0384 25 1 1.6758 1.9652 -0.8703 26 1 1.7383 1.9422 0.9086 27 1 2.7221 -0.1290 -1.8114 28 1 1.2419 -1.1258 -1.8384 29 1 3.6403 -2.3434 -2.5996 30 1 4.7057 -1.4166 -1.5160 31 1 4.9856 -3.4182 -0.0794 32 1 3.9202 -4.3449 -1.1629 33 1 5.4933 -3.9600 -3.0402 34 1 6.5592 -3.0332 -1.9572 35 1 8.8493 -5.3103 -3.7278 36 1 4.1578 -0.8808 0.5990 37 1 3.5064 -2.4164 1.2583 38 1 2.8717 -0.3379 3.0723 39 1 3.1380 0.8406 1.9294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720755301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:29 Heat of formation + Delta-G solvation = -17.249931 kcal Electronic energy + Delta-G solvation = -16041.215548 eV Core-core repulsion = 13596.616990 eV Total energy + Delta-G solvation = -2444.598558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.80723 -35.48860 -33.34046 -32.76144 -31.13195 -27.85519 -27.23472 -26.64897 -24.52188 -22.53322 -21.08272 -19.95333 -18.76243 -16.51696 -16.32840 -15.41492 -15.03367 -14.50858 -14.38098 -13.93130 -13.64418 -13.36526 -12.94026 -12.71733 -12.22695 -12.21835 -12.03902 -11.67870 -11.45974 -11.21567 -10.91811 -10.82850 -10.77212 -10.60983 -10.48391 -10.35490 -9.63330 -9.31403 -9.04775 -8.79403 -8.33565 -8.16072 -5.98729 -4.00790 3.32834 3.38713 3.42372 4.09710 4.43639 4.48435 4.57077 4.73252 4.89277 5.14986 5.27556 5.34971 5.37073 5.55646 5.58473 5.64341 5.71962 5.77952 5.83737 5.91078 5.98683 6.02860 6.13136 6.17093 6.28974 6.34522 6.67309 6.78284 6.94851 7.10569 7.24054 7.29168 7.38190 7.69378 7.84302 8.01649 8.45216 9.06323 9.63162 11.12796 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.052455 B = 0.004721 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.664142 B = 5929.337371 C = 6114.437008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.069 4.069 3 C -0.139 4.139 4 C 0.039 3.961 5 N -0.512 5.512 6 C 0.048 3.952 7 C -0.102 4.102 8 C 0.021 3.979 9 C -0.518 4.518 10 H 0.055 0.945 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.004 3.996 18 C 0.094 3.906 19 H 0.094 0.906 20 N -0.840 5.840 21 H 0.058 0.942 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.016 0.984 34 H 0.012 0.988 35 H 0.260 0.740 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.340 0.660 39 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.473 11.633 7.357 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.070 4.070 3 C -0.196 4.196 4 C -0.089 4.089 5 N -0.236 5.236 6 C -0.080 4.080 7 C -0.140 4.140 8 C -0.016 4.016 9 C -0.556 4.556 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.127 4.127 18 C -0.018 4.018 19 H 0.112 0.888 20 N -0.369 5.369 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.153 0.847 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.421 11.372 7.271 19.034 hybrid contribution 2.168 -0.598 -0.131 2.253 sum -11.253 10.774 7.140 17.137 Atomic orbital electron populations 1.21787 0.93606 1.01907 1.01553 1.21472 0.96306 0.95103 0.94139 1.21822 1.00186 0.95376 1.02250 1.23142 0.98086 0.91465 0.96215 1.64766 1.22112 1.34633 1.02108 1.22477 0.90224 0.98692 0.96590 1.21590 0.98416 0.94242 0.99736 1.19079 0.91565 0.96384 0.94588 1.21250 1.12380 1.07790 1.14216 0.92709 1.25027 0.97092 0.97331 0.95049 1.69968 1.24180 1.39195 1.20308 0.86595 0.78515 0.83857 0.79048 1.20625 1.21246 1.19896 1.24064 0.96815 0.99580 0.92217 1.22484 0.96076 0.92546 0.90694 0.88812 1.59031 1.49004 1.18791 1.10116 0.92316 0.92886 0.92315 0.93286 0.92751 0.91077 0.93888 0.90413 0.91216 0.95335 0.93748 0.92604 0.96605 0.96930 0.93046 0.94147 0.90043 0.84699 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 8.24 37.16 0.31 -0.98 16 2 C -0.07 -0.76 0.96 -152.90 -0.15 -0.90 16 3 C -0.14 -1.36 7.07 37.16 0.26 -1.09 16 4 C 0.04 0.51 6.02 -2.50 -0.02 0.50 16 5 N -0.51 -7.98 5.26 -230.14 -1.21 -9.19 16 6 C 0.05 0.87 4.69 -3.82 -0.02 0.85 16 7 C -0.10 -2.19 5.21 -26.73 -0.14 -2.33 16 8 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 9 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 10 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 13 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.00 0.05 5.48 -1.90 -0.01 0.04 16 18 C 0.09 1.07 3.67 -65.85 -0.24 0.83 16 19 H 0.09 1.12 7.86 -51.93 -0.41 0.71 16 20 N -0.84 -8.11 8.57 -3.09 -0.03 -8.14 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.50 7.69 -51.93 -0.40 0.10 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.67 7.28 -51.93 -0.38 0.29 16 27 H 0.04 0.57 7.32 -51.93 -0.38 0.19 16 28 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 29 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 30 H 0.03 0.52 7.90 -51.93 -0.41 0.11 16 31 H 0.04 0.94 7.25 -51.93 -0.38 0.57 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 36 H 0.04 0.58 7.85 -51.93 -0.41 0.17 16 37 H 0.08 1.19 7.76 -51.93 -0.40 0.78 16 38 H 0.34 2.93 9.08 -39.29 -0.36 2.57 16 39 H 0.34 3.12 6.93 -39.29 -0.27 2.85 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -30.23 304.65 -8.60 -38.83 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.11 Total: 0.05 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.55 Total: -16.45 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.50 Total: -43.97 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.23 -8.60 -38.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720755301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.581 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds