Wall clock time and date at job start Mon Mar 30 2020 03:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 110.34902 * 2 1 4 4 C 1.54459 * 110.45609 * 237.66343 * 2 1 3 5 5 N 1.47908 * 107.10570 * 242.33456 * 4 2 1 6 6 C 1.46898 * 110.99908 * 214.17677 * 5 4 2 7 7 C 1.53002 * 109.47129 * 187.26726 * 6 5 4 8 8 C 1.53000 * 109.46863 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46956 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00058 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00250 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99857 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00191 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47047 * 89.99895 * 13 11 9 15 15 H 1.48499 * 109.47120 * 210.00147 * 13 11 9 16 16 H 1.48500 * 109.47065 * 330.00050 * 13 11 9 17 17 C 1.48529 * 105.81635 * 334.68650 * 5 4 2 18 18 C 1.54600 * 110.30622 * 122.13873 * 2 1 3 19 19 H 1.09002 * 110.72660 * 22.51602 * 18 2 1 20 20 N 1.46905 * 110.72454 * 259.40933 * 18 2 1 21 21 H 1.09004 * 109.47165 * 297.86021 * 1 2 3 22 22 H 1.09001 * 109.47240 * 57.86299 * 1 2 3 23 23 H 1.09007 * 109.47363 * 177.86106 * 1 2 3 24 24 H 1.09005 * 109.46437 * 182.14004 * 3 2 1 25 25 H 1.09002 * 109.46983 * 302.13409 * 3 2 1 26 26 H 1.08998 * 109.47643 * 62.14677 * 3 2 1 27 27 H 1.09001 * 109.87711 * 122.97550 * 4 2 1 28 28 H 1.09000 * 110.07890 * 1.79943 * 4 2 1 29 29 H 1.09002 * 109.47151 * 307.26871 * 6 5 4 30 30 H 1.09002 * 109.47286 * 67.26785 * 6 5 4 31 31 H 1.08993 * 109.47437 * 300.00029 * 7 6 5 32 32 H 1.08993 * 109.46966 * 60.00092 * 7 6 5 33 33 H 1.09002 * 109.47352 * 300.00105 * 8 7 6 34 34 H 1.09002 * 109.47352 * 60.00182 * 8 7 6 35 35 H 0.97004 * 120.00067 * 180.02562 * 12 11 9 36 36 H 1.08997 * 110.67035 * 280.77032 * 17 5 4 37 37 H 1.09005 * 110.66284 * 157.64303 * 17 5 4 38 38 H 1.00901 * 110.99941 * 182.45162 * 20 18 2 39 39 H 1.00905 * 110.99757 * 306.41166 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4345 0.0000 4 6 2.0698 -0.7741 -1.2228 5 7 2.8368 -1.9273 -0.7036 6 6 3.9829 -2.2306 -1.5710 7 6 4.6430 -3.5309 -1.1079 8 6 5.8363 -3.8471 -2.0117 9 6 6.4861 -5.1282 -1.5560 10 1 6.0875 -5.6635 -0.7068 11 6 7.5887 -5.6175 -2.2236 12 7 8.0738 -4.9659 -3.2578 13 14 8.3937 -7.2058 -1.6590 14 1 7.7680 -8.3547 -2.3616 15 1 9.8446 -7.1642 -1.9729 16 1 8.2085 -7.3610 -0.1938 17 6 3.2876 -1.5346 0.6560 18 6 2.0665 -0.7713 1.2277 19 1 1.3172 -1.4682 1.6031 20 7 2.4838 0.1596 2.2848 21 1 -0.3634 0.4803 0.9086 22 1 -0.3634 0.5467 -0.8702 23 1 -0.3634 -1.0270 -0.0384 24 1 3.1513 1.4179 -0.0384 25 1 1.6758 1.9652 -0.8703 26 1 1.7383 1.9422 0.9086 27 1 2.7221 -0.1290 -1.8114 28 1 1.2419 -1.1258 -1.8384 29 1 3.6403 -2.3434 -2.5996 30 1 4.7057 -1.4166 -1.5160 31 1 4.9856 -3.4182 -0.0794 32 1 3.9202 -4.3449 -1.1629 33 1 5.4933 -3.9600 -3.0402 34 1 6.5592 -3.0332 -1.9572 35 1 8.8493 -5.3103 -3.7278 36 1 4.1578 -0.8808 0.5990 37 1 3.5064 -2.4164 1.2583 38 1 2.8717 -0.3379 3.0723 39 1 3.1380 0.8406 1.9294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720755301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:28 Heat of formation + Delta-G solvation = -38.308401 kcal Electronic energy + Delta-G solvation = -16042.128712 eV Core-core repulsion = 13596.616990 eV Total energy + Delta-G solvation = -2445.511722 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84961 -36.93757 -35.21721 -33.68477 -32.93796 -29.17899 -28.28207 -27.85337 -26.04023 -23.98658 -22.52438 -21.57176 -19.70391 -18.50761 -17.43158 -16.70007 -16.44703 -16.28074 -15.64171 -15.02461 -14.76103 -14.48412 -14.26750 -14.14434 -13.78925 -13.56116 -13.06749 -13.04464 -12.78788 -12.57858 -12.55481 -12.42993 -12.19005 -11.87058 -11.68890 -11.54626 -11.38499 -11.32120 -11.06588 -10.58072 -9.67478 -9.39351 -8.22655 -6.34163 1.38440 1.40188 1.51321 2.39092 2.95447 3.10399 3.48124 3.60026 3.81144 4.01003 4.12952 4.24024 4.24408 4.32177 4.44203 4.60373 4.66000 4.77431 4.81220 4.87046 4.88286 4.98300 5.01361 5.07076 5.10790 5.19078 5.25865 5.37875 5.47635 5.48851 5.68314 5.81669 5.92073 6.01427 6.21323 6.23951 6.55479 6.82047 7.35288 8.89422 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.052455 B = 0.004721 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.664142 B = 5929.337371 C = 6114.437008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.066 4.066 3 C -0.134 4.134 4 C 0.037 3.963 5 N -0.522 5.522 6 C 0.060 3.940 7 C -0.085 4.085 8 C 0.026 3.974 9 C -0.544 4.544 10 H 0.058 0.942 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.264 1.264 17 C 0.002 3.998 18 C 0.105 3.895 19 H 0.091 0.909 20 N -0.833 5.833 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.045 0.955 32 H 0.051 0.949 33 H -0.008 1.008 34 H -0.011 1.011 35 H 0.264 0.736 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.348 0.652 39 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.243 11.765 8.490 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.067 4.067 3 C -0.192 4.192 4 C -0.091 4.091 5 N -0.245 5.245 6 C -0.068 4.068 7 C -0.123 4.123 8 C -0.012 4.012 9 C -0.582 4.582 10 H 0.076 0.924 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.188 1.188 17 C -0.129 4.129 18 C -0.008 4.008 19 H 0.109 0.891 20 N -0.364 5.364 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.010 0.990 34 H 0.008 0.992 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.161 0.839 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.207 11.517 8.420 20.134 hybrid contribution 2.403 -0.607 -0.496 2.527 sum -11.805 10.910 7.925 17.921 Atomic orbital electron populations 1.21751 0.92403 1.01900 1.02375 1.21478 0.97194 0.95374 0.92628 1.21789 0.99787 0.94559 1.03040 1.23231 0.97765 0.90778 0.97298 1.64689 1.20876 1.36482 1.02488 1.22190 0.91014 0.96708 0.96894 1.21321 0.96487 0.95933 0.98594 1.18973 0.92808 0.95083 0.94308 1.21667 1.13122 1.08816 1.14609 0.92384 1.25994 0.97644 1.01192 0.94947 1.70096 1.24736 1.41115 1.21444 0.85425 0.77454 0.79008 0.79038 1.19652 1.20535 1.18777 1.24135 0.97975 0.99455 0.91305 1.22368 0.94708 0.92543 0.91220 0.89062 1.59030 1.49283 1.18360 1.09709 0.91701 0.91835 0.92784 0.93864 0.91954 0.90291 0.94099 0.89986 0.91525 0.95781 0.93617 0.93055 0.98967 0.99248 0.92697 0.94610 0.91041 0.83879 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.24 71.98 0.59 -1.59 16 2 C -0.07 -1.31 0.96 -51.14 -0.05 -1.36 16 3 C -0.13 -2.33 7.07 71.98 0.51 -1.82 16 4 C 0.04 0.93 6.02 86.61 0.52 1.45 16 5 N -0.52 -15.97 5.26 -882.04 -4.64 -20.61 16 6 C 0.06 2.21 4.69 86.30 0.40 2.61 16 7 C -0.09 -3.74 5.21 30.60 0.16 -3.58 16 8 C 0.03 1.42 4.97 29.85 0.15 1.57 16 9 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 10 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 11 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 12 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 13 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 17 C 0.00 0.04 5.48 86.65 0.47 0.52 16 18 C 0.10 2.21 3.67 46.12 0.17 2.38 16 19 H 0.09 2.02 7.86 -2.39 -0.02 2.00 16 20 N -0.83 -14.44 8.57 -163.68 -1.40 -15.84 16 21 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.04 0.80 7.69 -2.38 -0.02 0.78 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 1.27 7.28 -2.39 -0.02 1.25 16 27 H 0.04 1.04 7.32 -2.39 -0.02 1.02 16 28 H 0.08 1.97 7.71 -2.39 -0.02 1.96 16 29 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 30 H 0.02 0.90 7.90 -2.39 -0.02 0.88 16 31 H 0.05 1.96 7.25 -2.39 -0.02 1.94 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 33 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.04 1.00 7.85 -2.39 -0.02 0.98 16 37 H 0.07 2.05 7.76 -2.38 -0.02 2.04 16 38 H 0.35 5.33 9.08 -89.69 -0.81 4.51 16 39 H 0.34 5.63 6.93 -89.69 -0.62 5.01 16 Total: -1.00 -64.33 304.65 -0.54 -64.86 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -0.43 Total: 13.21 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 3.63 Total: -31.10 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -5.76 Total: -93.96 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.33 -0.54 -64.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720755301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.555 kcal (2) G-P(sol) polarization free energy of solvation -64.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds