Wall clock time and date at job start Mon Mar 30 2020 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48550 * 111.00101 * 2 1 4 4 C 1.54378 * 104.59514 * 200.96003 * 3 2 1 5 5 H 1.09007 * 110.32346 * 264.85569 * 4 3 2 6 6 N 1.46898 * 110.32918 * 142.75098 * 4 3 2 7 7 C 1.46900 * 111.00374 * 86.44556 * 6 4 3 8 8 C 1.53003 * 109.47302 * 180.02562 * 7 6 4 9 9 C 1.50693 * 109.46964 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00295 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00095 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99488 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00301 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47291 * 89.99971 * 13 11 9 15 15 H 1.48502 * 109.46995 * 210.00097 * 13 11 9 16 16 H 1.48499 * 109.47250 * 329.99696 * 13 11 9 17 17 C 1.54444 * 105.07843 * 23.94904 * 4 3 2 18 18 C 1.53004 * 110.30175 * 241.02098 * 17 4 3 19 19 C 1.53001 * 110.43527 * 118.75730 * 17 4 3 20 20 C 1.48560 * 110.99883 * 244.57669 * 2 1 3 21 21 H 1.09004 * 109.47087 * 175.41987 * 1 2 3 22 22 H 1.08995 * 109.47174 * 295.42393 * 1 2 3 23 23 H 1.08998 * 109.46832 * 55.42159 * 1 2 3 24 24 H 1.09008 * 110.41398 * 319.73707 * 3 2 1 25 25 H 1.09000 * 110.41443 * 82.17889 * 3 2 1 26 26 H 1.00898 * 111.00498 * 210.41229 * 6 4 3 27 27 H 1.08996 * 109.47103 * 300.00866 * 7 6 4 28 28 H 1.09005 * 109.46363 * 60.00376 * 7 6 4 29 29 H 1.08999 * 109.47181 * 300.00555 * 8 7 6 30 30 H 1.09001 * 109.46794 * 60.00454 * 8 7 6 31 31 H 0.97005 * 119.99439 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.47396 * 176.96682 * 18 17 4 33 33 H 1.09002 * 109.47038 * 296.96635 * 18 17 4 34 34 H 1.08997 * 109.47180 * 56.96291 * 18 17 4 35 35 H 1.09000 * 109.46977 * 302.95219 * 19 17 4 36 36 H 1.09001 * 109.46989 * 62.94964 * 19 17 4 37 37 H 1.09002 * 109.47114 * 182.95486 * 19 17 4 38 38 H 1.09002 * 110.41441 * 277.82232 * 20 2 1 39 39 H 1.09002 * 110.41248 * 40.14533 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3868 0.0000 4 6 3.4433 1.2500 -0.5344 5 1 4.1486 1.1765 0.2935 6 7 3.7809 2.3948 -1.3908 7 6 4.2937 3.5163 -0.5927 8 6 4.6329 4.6873 -1.5172 9 6 5.1595 5.8375 -0.6984 10 1 5.2442 5.7428 0.3741 11 6 5.5332 7.0110 -1.3184 12 7 5.4296 7.1265 -2.6244 13 14 6.1866 8.4366 -0.3036 14 1 7.6622 8.3220 -0.1815 15 1 5.8431 9.7178 -0.9712 16 1 5.5740 8.4034 1.0487 17 6 3.4431 -0.0542 -1.3616 18 6 4.4339 -1.0586 -0.7695 19 6 3.7915 0.2395 -2.8222 20 6 2.0014 -0.5954 -1.2526 21 1 -0.3633 -1.0244 -0.0821 22 1 -0.3633 0.4412 0.9281 23 1 -0.3633 0.5832 -0.8461 24 1 1.4099 2.0212 -0.6603 25 1 2.0079 1.7916 1.0120 26 1 4.4405 2.1289 -2.1066 27 1 3.5349 3.8284 0.1250 28 1 5.1909 3.2023 -0.0593 29 1 5.3915 4.3754 -2.2351 30 1 3.7354 5.0011 -2.0502 31 1 5.6929 7.9519 -3.0607 32 1 4.3839 -1.9920 -1.3301 33 1 5.4434 -0.6519 -0.8302 34 1 4.1803 -1.2472 0.2736 35 1 3.0853 0.9654 -3.2253 36 1 4.8018 0.6446 -2.8803 37 1 3.7357 -0.6821 -3.4015 38 1 2.0079 -1.6832 -1.1837 39 1 1.4086 -0.2731 -2.1087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722269630.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:31 Heat of formation + Delta-G solvation = -2.882242 kcal Electronic energy + Delta-G solvation = -16221.550072 eV Core-core repulsion = 13777.574544 eV Total energy + Delta-G solvation = -2443.975528 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.71873 -35.48716 -33.96340 -32.59659 -29.77898 -28.13998 -27.13585 -26.48998 -24.30100 -22.97819 -21.11643 -20.25551 -18.64114 -16.32107 -15.74331 -15.57504 -15.03834 -14.49146 -14.33318 -13.96718 -13.40734 -13.16904 -13.14188 -12.47735 -12.40155 -12.01435 -11.83953 -11.64684 -11.46830 -11.28608 -10.97693 -10.93168 -10.79143 -10.60695 -10.44527 -10.31823 -9.93958 -9.32238 -9.13030 -8.46172 -8.34372 -7.79304 -5.98946 -4.01306 3.32653 3.38802 3.42403 4.05214 4.45637 4.56072 4.70140 4.84064 5.05861 5.26794 5.37108 5.39751 5.44547 5.52495 5.58952 5.65056 5.70033 5.77674 5.82408 5.94126 6.00754 6.10394 6.14047 6.22437 6.28240 6.35624 6.44083 6.49605 6.84520 7.00329 7.04921 7.53778 7.74801 7.85254 7.99242 8.10039 8.45230 9.06005 9.62461 11.12522 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040176 B = 0.005355 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.766793 B = 5227.413717 C = 5506.131158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.518 5.518 3 C 0.042 3.958 4 C 0.089 3.911 5 H 0.050 0.950 6 N -0.688 5.688 7 C 0.065 3.935 8 C 0.026 3.974 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.071 4.071 18 C -0.134 4.134 19 C -0.140 4.140 20 C 0.045 3.955 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.029 0.971 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.341 0.659 27 H 0.056 0.944 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.024 0.976 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 -15.922 2.255 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.242 5.242 3 C -0.086 4.086 4 C -0.022 4.022 5 H 0.068 0.932 6 N -0.323 5.323 7 C -0.063 4.063 8 C -0.012 4.012 9 C -0.560 4.560 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.072 4.072 18 C -0.192 4.192 19 C -0.198 4.198 20 C -0.083 4.083 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.163 0.837 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.490 -15.850 2.575 17.320 hybrid contribution 0.921 1.045 0.058 1.394 sum -5.570 -14.806 2.633 16.036 Atomic orbital electron populations 1.22480 0.88366 1.01446 1.01112 1.65339 1.07850 1.16276 1.34734 1.23181 0.95406 0.89135 1.00901 1.22286 0.95860 0.89628 0.94408 0.93174 1.60861 1.49720 1.06619 1.15112 1.22198 0.96177 0.91419 0.96548 1.19058 0.96848 0.90862 0.94387 1.21185 1.42693 0.98436 0.93651 0.92779 1.25001 0.95842 0.98613 0.94897 1.69979 1.48210 1.26809 1.08321 0.86590 0.79165 0.81891 0.80325 1.20704 1.21203 1.19882 1.21458 0.94841 0.95033 0.95895 1.21840 0.98272 0.97993 1.01048 1.21818 1.02168 1.01379 0.94406 1.23173 0.94469 0.99446 0.91236 0.91690 0.91409 0.95274 0.92297 0.90700 0.83667 0.92499 0.96685 0.96928 0.95733 0.93023 0.92809 0.92820 0.92079 0.90991 0.92234 0.92923 0.90598 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.53 60.07 0.57 0.74 16 2 N -0.52 -6.74 5.66 -238.23 -1.35 -8.09 16 3 C 0.04 0.63 6.12 -2.19 -0.01 0.61 16 4 C 0.09 1.36 3.02 -66.23 -0.20 1.16 16 5 H 0.05 0.81 7.44 -51.92 -0.39 0.42 16 6 N -0.69 -12.34 5.57 -105.16 -0.59 -12.93 16 7 C 0.06 1.38 5.46 -3.82 -0.02 1.36 16 8 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 9 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 13 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 C -0.07 -0.90 1.03 -153.03 -0.16 -1.06 16 18 C -0.13 -1.51 8.24 37.16 0.31 -1.21 16 19 C -0.14 -1.71 7.11 37.16 0.26 -1.44 16 20 C 0.04 0.54 5.58 -2.18 -0.01 0.53 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.03 0.32 7.97 -51.93 -0.41 -0.09 16 24 H 0.06 0.95 7.82 -51.92 -0.41 0.55 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.34 5.93 5.73 -39.29 -0.23 5.70 16 27 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 28 H 0.01 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.97 7.69 -51.93 -0.40 0.57 16 36 H 0.06 0.74 6.86 -51.93 -0.36 0.39 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 39 H 0.05 0.56 7.69 -51.93 -0.40 0.16 16 LS Contribution 305.83 15.07 4.61 4.61 Total: -1.00 -29.80 305.83 -8.61 -38.40 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.18 Total: 0.01 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 0.18 Total: -12.44 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -1.20 Total: -47.39 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.80 -8.61 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722269630.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.522 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds