Wall clock time and date at job start Mon Mar 30 2020 03:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47164 * 2 1 4 4 N 1.46901 * 109.49958 * 59.99858 * 3 2 1 5 5 C 1.53123 * 109.50345 * 299.92213 * 3 2 1 6 6 C 1.53119 * 109.15753 * 182.43860 * 5 3 2 7 7 C 1.53039 * 109.30904 * 57.59683 * 6 5 3 8 8 N 1.46844 * 109.52363 * 300.83943 * 7 6 5 9 9 C 1.46902 * 111.00469 * 185.83717 * 8 7 6 10 10 H 1.09003 * 109.47069 * 290.79740 * 9 8 7 11 11 C 1.52994 * 109.47386 * 170.78738 * 9 8 7 12 12 C 1.50704 * 109.46757 * 50.78639 * 9 8 7 13 13 H 1.08001 * 119.99782 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99914 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99889 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99907 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47005 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47153 * 119.99746 * 16 14 12 19 19 H 1.48496 * 109.47234 * 240.00034 * 16 14 12 20 20 C 1.46852 * 111.19772 * 61.74011 * 8 7 6 21 21 H 1.09000 * 109.47140 * 60.00051 * 1 2 3 22 22 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47375 * 300.00034 * 1 2 3 24 24 H 1.09001 * 109.46922 * 240.00249 * 2 1 3 25 25 H 1.09000 * 109.47140 * 119.99948 * 2 1 3 26 26 H 1.00897 * 111.00280 * 300.00109 * 4 3 2 27 27 H 1.00900 * 110.99703 * 63.95533 * 4 3 2 28 28 H 1.09000 * 109.52057 * 302.30774 * 5 3 2 29 29 H 1.09000 * 109.51884 * 62.49901 * 5 3 2 30 30 H 1.08995 * 109.47620 * 297.65917 * 6 5 3 31 31 H 1.08997 * 109.53465 * 177.57437 * 6 5 3 32 32 H 1.09001 * 109.46496 * 180.82006 * 7 6 5 33 33 H 1.09008 * 109.46257 * 60.85184 * 7 6 5 34 34 H 1.09005 * 109.47192 * 180.02562 * 11 9 8 35 35 H 1.08994 * 109.47670 * 300.00367 * 11 9 8 36 36 H 1.09001 * 109.46716 * 60.00546 * 11 9 8 37 37 H 0.97002 * 119.99888 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.46165 * 178.23770 * 20 8 7 39 39 H 1.09002 * 109.45431 * 58.27094 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5506 2.1357 1.1992 5 6 1.5316 2.1645 -1.2510 6 6 2.0960 3.5877 -1.2740 7 6 3.6248 3.5264 -1.2391 8 7 4.0602 2.8276 -0.0232 9 6 5.5222 2.8707 0.1139 10 1 5.9780 2.2519 -0.6591 11 6 5.9210 2.3408 1.4927 12 6 5.9990 4.2926 -0.0350 13 1 5.2870 5.0849 -0.2132 14 6 7.3440 4.5818 0.0562 15 7 8.2109 3.6169 0.2728 16 14 7.9349 6.3443 -0.1276 17 1 6.7700 7.2350 -0.3623 18 1 8.6357 6.7634 1.1127 19 1 8.8684 6.4359 -1.2788 20 6 3.5703 1.4434 -0.0020 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5420 2.1494 1.2227 27 1 1.9262 1.7174 2.0371 28 1 1.8615 1.6279 -2.1405 29 1 0.4425 2.2043 -1.2312 30 1 1.7339 4.1364 -0.4047 31 1 1.7728 4.0933 -2.1840 32 1 4.0290 4.5387 -1.2407 33 1 3.9869 2.9895 -2.1159 34 1 7.0058 2.3732 1.5945 35 1 5.4653 2.9596 2.2656 36 1 5.5762 1.3124 1.6003 37 1 9.1572 3.8203 0.3366 38 1 3.9350 0.9428 0.8950 39 1 3.9326 0.9165 -0.8847 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888106387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:53 Heat of formation + Delta-G solvation = -4.811042 kcal Electronic energy + Delta-G solvation = -16967.080704 eV Core-core repulsion = 14523.021536 eV Total energy + Delta-G solvation = -2444.059167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.14737 -35.74019 -33.08466 -31.57205 -30.48366 -28.54302 -27.94015 -25.15844 -24.00852 -22.79064 -20.76085 -19.34392 -18.43481 -16.19566 -15.57823 -15.31662 -14.54872 -14.36484 -14.08736 -13.79796 -13.42436 -12.89752 -12.65972 -12.30791 -12.05968 -11.86227 -11.47682 -11.32448 -11.08631 -10.95107 -10.82907 -10.55294 -10.34339 -10.23848 -10.05094 -9.99514 -9.68141 -9.29357 -8.67724 -8.35452 -8.10720 -6.89962 -5.94585 -3.98137 3.33924 3.41611 3.46554 4.46179 4.73002 4.93627 5.07751 5.13757 5.26690 5.37171 5.49345 5.52787 5.63976 5.82601 5.95698 6.00705 6.09611 6.11254 6.22605 6.32364 6.37014 6.41689 6.52931 6.59066 6.93501 6.95683 7.06421 7.17525 7.31341 7.60169 7.67557 7.88004 7.90809 7.93028 8.34610 8.47339 8.77009 9.10362 9.66755 11.12459 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046108 B = 0.007313 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.121150 B = 3827.866447 C = 4150.889180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.155 4.155 3 C 0.126 3.874 4 N -0.814 5.814 5 C -0.103 4.103 6 C -0.110 4.110 7 C 0.066 3.934 8 N -0.512 5.512 9 C 0.210 3.790 10 H -0.007 1.007 11 C -0.127 4.127 12 C -0.500 4.500 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.068 3.932 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.326 0.674 27 H 0.337 0.663 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.009 0.991 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.004 0.996 37 H 0.258 0.742 38 H 0.067 0.933 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.856 -5.509 -0.987 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C 0.032 3.968 4 N -0.343 5.343 5 C -0.141 4.141 6 C -0.148 4.148 7 C -0.062 4.062 8 N -0.237 5.237 9 C 0.104 3.896 10 H 0.010 0.990 11 C -0.185 4.185 12 C -0.538 4.538 13 H 0.083 0.917 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.213 1.213 20 C -0.061 4.061 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.139 0.861 27 H 0.150 0.850 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.028 0.972 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.023 0.977 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -12.466 -4.626 -0.856 13.324 hybrid contribution 0.394 -0.614 -0.542 0.909 sum -12.072 -5.240 -1.398 13.235 Atomic orbital electron populations 1.21811 0.96112 1.01223 1.01811 1.22348 0.95964 0.99086 1.02123 1.20826 0.95238 0.89349 0.91346 1.58651 1.11732 1.60400 1.03550 1.21593 0.99157 0.97216 0.96118 1.21532 0.96604 0.95681 1.00964 1.21943 0.93205 1.00619 0.90476 1.61881 1.14311 1.11263 1.36227 1.19229 0.80729 0.96339 0.93268 0.98977 1.21772 1.03334 0.95161 0.98279 1.21270 0.91822 0.92871 1.47885 0.91651 1.24942 0.96850 0.97131 0.95429 1.69914 1.01931 1.31354 1.50251 0.86490 0.78684 0.85032 0.77502 1.19727 1.21099 1.21264 1.22008 0.92138 0.92336 0.99600 0.92338 0.93136 0.92917 0.91904 0.92239 0.86107 0.85008 0.92820 0.92764 0.90365 0.93478 0.89652 0.97234 0.89978 0.94629 0.97731 0.93183 0.91484 0.96405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.23 37.16 0.34 -1.18 16 2 C -0.15 -1.89 5.17 -26.73 -0.14 -2.03 16 3 C 0.13 1.86 0.60 -131.52 -0.08 1.78 16 4 N -0.81 -11.60 8.04 0.81 0.01 -11.59 16 5 C -0.10 -1.50 4.53 -26.61 -0.12 -1.62 16 6 C -0.11 -1.84 5.93 -26.65 -0.16 -2.00 16 7 C 0.07 1.36 5.15 -3.83 -0.02 1.34 16 8 N -0.51 -11.28 4.37 -228.07 -1.00 -12.28 16 9 C 0.21 5.46 2.07 -68.86 -0.14 5.32 16 10 H -0.01 -0.21 8.13 -51.93 -0.42 -0.63 16 11 C -0.13 -3.20 8.88 37.15 0.33 -2.87 16 12 C -0.50 -13.94 7.87 -34.44 -0.27 -14.21 16 13 H 0.07 1.82 6.04 -52.49 -0.32 1.51 16 14 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 15 N -0.89 -25.99 11.32 55.43 0.63 -25.36 16 16 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.07 1.28 4.16 -3.84 -0.02 1.27 16 21 H 0.06 0.58 6.49 -51.93 -0.34 0.25 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.49 6.67 -51.93 -0.35 0.15 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.33 3.92 7.17 -39.29 -0.28 3.64 16 27 H 0.34 4.70 8.99 -39.29 -0.35 4.35 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.69 6.58 -51.93 -0.34 0.35 16 30 H 0.08 1.39 7.73 -51.93 -0.40 0.99 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.93 5.74 -51.93 -0.30 1.63 16 33 H 0.01 0.20 8.14 -51.92 -0.42 -0.22 16 34 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.00 0.09 6.40 -51.93 -0.33 -0.25 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.07 1.28 6.18 -51.93 -0.32 0.96 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 289.10 15.07 4.36 4.36 Total: -1.00 -28.84 289.10 -7.98 -36.81 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.58 Total: 4.09 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -0.37 Total: -12.69 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.36 Total: -49.23 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.84 -7.98 -36.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888106387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.004 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds