Wall clock time and date at job start Mon Mar 30 2020 03:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47164 * 2 1 4 4 N 1.46901 * 109.49958 * 59.99858 * 3 2 1 5 5 C 1.53123 * 109.50345 * 299.92213 * 3 2 1 6 6 C 1.53119 * 109.15753 * 182.43860 * 5 3 2 7 7 C 1.53039 * 109.30904 * 57.59683 * 6 5 3 8 8 N 1.46844 * 109.52363 * 300.83943 * 7 6 5 9 9 C 1.46902 * 111.00469 * 185.83717 * 8 7 6 10 10 H 1.09003 * 109.47069 * 290.79740 * 9 8 7 11 11 C 1.52994 * 109.47386 * 170.78738 * 9 8 7 12 12 C 1.50704 * 109.46757 * 50.78639 * 9 8 7 13 13 H 1.08001 * 119.99782 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99914 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99889 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99907 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47005 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47153 * 119.99746 * 16 14 12 19 19 H 1.48496 * 109.47234 * 240.00034 * 16 14 12 20 20 C 1.46852 * 111.19772 * 61.74011 * 8 7 6 21 21 H 1.09000 * 109.47140 * 60.00051 * 1 2 3 22 22 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47375 * 300.00034 * 1 2 3 24 24 H 1.09001 * 109.46922 * 240.00249 * 2 1 3 25 25 H 1.09000 * 109.47140 * 119.99948 * 2 1 3 26 26 H 1.00897 * 111.00280 * 300.00109 * 4 3 2 27 27 H 1.00900 * 110.99703 * 63.95533 * 4 3 2 28 28 H 1.09000 * 109.52057 * 302.30774 * 5 3 2 29 29 H 1.09000 * 109.51884 * 62.49901 * 5 3 2 30 30 H 1.08995 * 109.47620 * 297.65917 * 6 5 3 31 31 H 1.08997 * 109.53465 * 177.57437 * 6 5 3 32 32 H 1.09001 * 109.46496 * 180.82006 * 7 6 5 33 33 H 1.09008 * 109.46257 * 60.85184 * 7 6 5 34 34 H 1.09005 * 109.47192 * 180.02562 * 11 9 8 35 35 H 1.08994 * 109.47670 * 300.00367 * 11 9 8 36 36 H 1.09001 * 109.46716 * 60.00546 * 11 9 8 37 37 H 0.97002 * 119.99888 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.46165 * 178.23770 * 20 8 7 39 39 H 1.09002 * 109.45431 * 58.27094 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5506 2.1357 1.1992 5 6 1.5316 2.1645 -1.2510 6 6 2.0960 3.5877 -1.2740 7 6 3.6248 3.5264 -1.2391 8 7 4.0602 2.8276 -0.0232 9 6 5.5222 2.8707 0.1139 10 1 5.9780 2.2519 -0.6591 11 6 5.9210 2.3408 1.4927 12 6 5.9990 4.2926 -0.0350 13 1 5.2870 5.0849 -0.2132 14 6 7.3440 4.5818 0.0562 15 7 8.2109 3.6169 0.2728 16 14 7.9349 6.3443 -0.1276 17 1 6.7700 7.2350 -0.3623 18 1 8.6357 6.7634 1.1127 19 1 8.8684 6.4359 -1.2788 20 6 3.5703 1.4434 -0.0020 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5420 2.1494 1.2227 27 1 1.9262 1.7174 2.0371 28 1 1.8615 1.6279 -2.1405 29 1 0.4425 2.2043 -1.2312 30 1 1.7339 4.1364 -0.4047 31 1 1.7728 4.0933 -2.1840 32 1 4.0290 4.5387 -1.2407 33 1 3.9869 2.9895 -2.1159 34 1 7.0058 2.3732 1.5945 35 1 5.4653 2.9596 2.2656 36 1 5.5762 1.3124 1.6003 37 1 9.1572 3.8203 0.3366 38 1 3.9350 0.9428 0.8950 39 1 3.9326 0.9165 -0.8847 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888106387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:53 Heat of formation + Delta-G solvation = -24.802525 kcal Electronic energy + Delta-G solvation = -16967.947599 eV Core-core repulsion = 14523.021536 eV Total energy + Delta-G solvation = -2444.926063 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.54788 -37.35053 -34.87097 -33.29576 -31.50741 -30.31697 -29.40572 -27.16990 -25.40823 -24.19186 -22.27685 -21.14545 -19.74490 -18.28834 -17.25298 -16.57345 -16.14306 -15.80984 -15.28166 -15.19238 -14.94310 -14.59045 -14.33462 -13.66608 -13.45691 -13.39519 -13.01973 -12.89393 -12.70510 -12.39478 -12.33561 -12.17675 -12.07464 -11.97007 -11.68966 -11.55795 -11.37956 -10.77357 -10.70127 -10.48556 -9.21749 -8.73552 -8.10373 -6.21641 1.40905 1.42517 1.54854 2.43125 3.17296 3.34744 3.76836 3.87602 4.00227 4.15082 4.33450 4.36739 4.46418 4.69307 4.73176 4.77384 4.79596 4.82282 4.92463 5.02918 5.05333 5.08576 5.11864 5.17309 5.25150 5.33587 5.34697 5.48157 5.55659 5.65266 5.76216 5.85281 6.28070 6.50702 6.52834 6.88000 6.91479 6.97178 7.47796 8.96220 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046108 B = 0.007313 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.121150 B = 3827.866447 C = 4150.889180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.149 4.149 3 C 0.133 3.867 4 N -0.824 5.824 5 C -0.100 4.100 6 C -0.100 4.100 7 C 0.065 3.935 8 N -0.514 5.514 9 C 0.213 3.787 10 H -0.048 1.048 11 C -0.113 4.113 12 C -0.516 4.516 13 H 0.060 0.940 14 C 0.008 3.992 15 N -0.923 5.923 16 Si 0.961 3.039 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.281 1.281 20 C 0.066 3.934 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.342 0.658 27 H 0.339 0.661 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.059 0.941 33 H -0.003 1.003 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.060 0.940 39 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.954 -5.374 -0.979 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C 0.040 3.960 4 N -0.356 5.356 5 C -0.138 4.138 6 C -0.138 4.138 7 C -0.064 4.064 8 N -0.238 5.238 9 C 0.106 3.894 10 H -0.031 1.031 11 C -0.171 4.171 12 C -0.555 4.555 13 H 0.078 0.922 14 C -0.190 4.190 15 N -0.563 5.563 16 Si 0.786 3.214 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.207 1.207 20 C -0.063 4.063 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.157 0.843 27 H 0.152 0.848 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.015 0.985 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -14.595 -4.498 -0.848 15.296 hybrid contribution 1.057 -0.694 -0.556 1.381 sum -13.538 -5.192 -1.405 14.567 Atomic orbital electron populations 1.21777 0.93886 1.02329 1.02433 1.22256 0.97774 0.96797 1.02079 1.20683 0.91996 0.91419 0.91904 1.58580 1.13076 1.60606 1.03312 1.21602 1.00831 0.95417 0.95955 1.21442 0.93073 0.97567 1.01700 1.21963 0.96272 0.98698 0.89424 1.61869 1.11538 1.13451 1.36896 1.19061 0.83227 0.94832 0.92293 1.03088 1.21558 1.01556 0.96326 0.97661 1.21520 0.92190 0.93664 1.48078 0.92154 1.25747 0.96969 1.01211 0.95037 1.70042 1.02202 1.33310 1.50753 0.85462 0.78183 0.80132 0.77595 1.19141 1.20520 1.20717 1.22132 0.95424 0.90101 0.98662 0.91895 0.91897 0.92035 0.92218 0.92167 0.84269 0.84824 0.92725 0.89765 0.91041 0.91394 0.92212 0.98525 0.92467 0.94991 0.95650 0.93029 0.92120 0.97623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.23 71.98 0.66 -1.73 16 2 C -0.15 -3.25 5.17 30.60 0.16 -3.09 16 3 C 0.13 3.68 0.60 3.58 0.00 3.68 16 4 N -0.82 -21.59 8.04 -151.35 -1.22 -22.81 16 5 C -0.10 -2.66 4.53 30.67 0.14 -2.52 16 6 C -0.10 -3.19 5.93 30.65 0.18 -3.00 16 7 C 0.06 2.71 5.15 86.33 0.44 3.16 16 8 N -0.51 -22.94 4.37 -875.49 -3.83 -26.77 16 9 C 0.21 11.43 2.07 44.17 0.09 11.52 16 10 H -0.05 -2.92 8.13 -2.39 -0.02 -2.94 16 11 C -0.11 -5.80 8.88 71.98 0.64 -5.16 16 12 C -0.52 -29.52 7.87 25.60 0.20 -29.32 16 13 H 0.06 3.45 6.04 -2.91 -0.02 3.43 16 14 C 0.01 0.48 5.30 84.66 0.45 0.93 16 15 N -0.92 -54.82 11.32 21.45 0.24 -54.58 16 16 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 20 C 0.07 2.46 4.16 86.32 0.36 2.82 16 21 H 0.06 0.99 6.49 -2.39 -0.02 0.97 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.90 6.67 -2.39 -0.02 0.89 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.34 7.09 7.17 -89.70 -0.64 6.45 16 27 H 0.34 8.78 8.99 -89.69 -0.81 7.98 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.79 6.58 -2.39 -0.02 1.78 16 30 H 0.07 2.40 7.73 -2.39 -0.02 2.38 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 2.78 5.74 -2.39 -0.01 2.76 16 33 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 34 H 0.06 3.22 6.07 -2.38 -0.01 3.21 16 35 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.02 1.14 6.40 -2.39 -0.02 1.13 16 37 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.06 2.31 6.18 -2.39 -0.01 2.30 16 39 H 0.01 0.22 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -63.08 289.10 0.14 -62.94 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.41 Total: 16.96 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.33 Total: -22.72 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -4.80 Total: -104.16 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.08 0.14 -62.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888106387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.138 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds