Wall clock time and date at job start Mon Mar 30 2020 03:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47150 * 2 1 4 4 N 1.46898 * 109.50293 * 59.91830 * 3 2 1 5 5 C 1.53122 * 109.50295 * 299.80530 * 3 2 1 6 6 C 1.53116 * 109.16011 * 182.40514 * 5 3 2 7 7 C 1.53032 * 109.27944 * 57.65132 * 6 5 3 8 8 N 1.46842 * 109.52623 * 300.81959 * 7 6 5 9 9 C 1.46895 * 111.00314 * 185.84186 * 8 7 6 10 10 H 1.09000 * 109.47468 * 175.79162 * 9 8 7 11 11 C 1.53003 * 109.47239 * 295.78895 * 9 8 7 12 12 C 1.50702 * 109.47213 * 55.78919 * 9 8 7 13 13 H 1.08000 * 119.99739 * 356.97338 * 12 9 8 14 14 C 1.37879 * 119.99661 * 176.97732 * 12 9 8 15 15 N 1.31506 * 120.00511 * 352.37729 * 14 12 9 16 16 Si 1.86805 * 119.99696 * 172.65657 * 14 12 9 17 17 H 1.48500 * 109.46981 * 264.79425 * 16 14 12 18 18 H 1.48498 * 109.46931 * 24.79243 * 16 14 12 19 19 H 1.48496 * 109.47367 * 144.79344 * 16 14 12 20 20 C 1.46849 * 111.19592 * 61.74184 * 8 7 6 21 21 H 1.08992 * 109.47255 * 299.99975 * 1 2 3 22 22 H 1.09002 * 109.47384 * 60.00424 * 1 2 3 23 23 H 1.09003 * 109.47035 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47363 * 239.99982 * 2 1 3 25 25 H 1.09001 * 109.46956 * 119.99900 * 2 1 3 26 26 H 1.00903 * 111.00138 * 300.08326 * 4 3 2 27 27 H 1.00901 * 110.99793 * 64.03533 * 4 3 2 28 28 H 1.09006 * 109.52007 * 302.30561 * 5 3 2 29 29 H 1.09002 * 109.52551 * 62.49218 * 5 3 2 30 30 H 1.09000 * 109.50425 * 177.59276 * 6 5 3 31 31 H 1.09001 * 109.50213 * 297.66755 * 6 5 3 32 32 H 1.08999 * 109.46228 * 180.80541 * 7 6 5 33 33 H 1.09004 * 109.46506 * 60.83906 * 7 6 5 34 34 H 1.08994 * 109.47758 * 177.99722 * 11 9 8 35 35 H 1.09001 * 109.47246 * 298.00101 * 11 9 8 36 36 H 1.09006 * 109.47149 * 57.99443 * 11 9 8 37 37 H 0.96998 * 120.00675 * 180.27806 * 15 14 12 38 38 H 1.08998 * 109.46554 * 58.27864 * 20 8 7 39 39 H 1.09003 * 109.46119 * 178.24144 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5491 2.1362 1.1982 5 6 1.5340 2.1636 -1.2524 6 6 2.0978 3.5870 -1.2750 7 6 3.6264 3.5257 -1.2380 8 7 4.0603 2.8275 -0.0213 9 6 5.5220 2.8708 0.1177 10 1 5.8109 2.4123 1.0634 11 6 6.1672 2.1042 -1.0387 12 6 5.9870 4.3041 0.0916 13 1 5.2743 5.1001 -0.0663 14 6 7.3221 4.5990 0.2691 15 7 8.1657 3.6494 0.6095 16 14 7.9312 6.3492 0.0339 17 1 8.4484 6.5117 -1.3486 18 1 6.8107 7.2976 0.2579 19 1 9.0187 6.6297 1.0054 20 6 3.5703 1.4434 0.0000 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5404 2.1488 1.2210 27 1 1.9246 1.7192 2.0368 28 1 1.8656 1.6263 -2.1410 29 1 0.4449 2.2033 -1.2350 30 1 1.7757 4.0916 -2.1860 31 1 1.7338 4.1364 -0.4067 32 1 4.0306 4.5380 -1.2396 33 1 3.9897 2.9885 -2.1142 34 1 7.2522 2.1663 -0.9554 35 1 5.8589 1.0595 -0.9989 36 1 5.8499 2.5407 -1.9858 37 1 9.1043 3.8576 0.7384 38 1 3.9338 0.9158 -0.8818 39 1 3.9338 0.9432 0.8977 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888106388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:56 Heat of formation + Delta-G solvation = -5.938888 kcal Electronic energy + Delta-G solvation = -16997.227942 eV Core-core repulsion = 14553.119868 eV Total energy + Delta-G solvation = -2444.108074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.21587 -35.91111 -32.97243 -31.55782 -30.49570 -28.60565 -27.61482 -25.13545 -24.22202 -22.75833 -21.31387 -19.28321 -18.26922 -16.04146 -15.52504 -15.20252 -14.53529 -14.34814 -14.10776 -13.82285 -13.52632 -13.02428 -12.73414 -12.19626 -11.93760 -11.91055 -11.59517 -11.32926 -11.06715 -10.96006 -10.85396 -10.64801 -10.41730 -10.36577 -10.14382 -9.99048 -9.69188 -9.29914 -8.77339 -8.27739 -8.10787 -6.87721 -5.95858 -3.95490 3.35401 3.42353 3.46715 4.47710 4.73446 4.93363 5.07717 5.13682 5.28114 5.38057 5.48948 5.52442 5.63907 5.82375 5.95401 6.00509 6.09250 6.11142 6.22253 6.31857 6.36374 6.42183 6.51634 6.57423 6.74649 6.89890 6.99914 7.03049 7.19955 7.56548 7.67385 7.76477 7.90609 7.93659 8.24693 8.52326 8.76832 9.11257 9.68169 11.13729 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046683 B = 0.007214 C = 0.006843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.650163 B = 3880.508261 C = 4090.518770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.155 4.155 3 C 0.125 3.875 4 N -0.814 5.814 5 C -0.102 4.102 6 C -0.110 4.110 7 C 0.064 3.936 8 N -0.510 5.510 9 C 0.209 3.791 10 H 0.042 0.958 11 C -0.168 4.168 12 C -0.498 4.498 13 H 0.064 0.936 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.283 1.283 18 H -0.273 1.273 19 H -0.288 1.288 20 C 0.070 3.930 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.326 0.674 27 H 0.337 0.663 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.014 0.986 34 H 0.073 0.927 35 H 0.010 0.990 36 H 0.029 0.971 37 H 0.259 0.741 38 H 0.025 0.975 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.787 -5.737 -2.360 14.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C 0.032 3.968 4 N -0.344 5.344 5 C -0.140 4.140 6 C -0.148 4.148 7 C -0.064 4.064 8 N -0.233 5.233 9 C 0.103 3.897 10 H 0.060 0.940 11 C -0.227 4.227 12 C -0.536 4.536 13 H 0.082 0.918 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.210 1.210 18 H -0.198 1.198 19 H -0.214 1.214 20 C -0.059 4.059 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.139 0.861 27 H 0.150 0.850 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.032 0.968 34 H 0.092 0.908 35 H 0.029 0.971 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.411 -4.852 -2.196 13.505 hybrid contribution 0.463 -0.629 -0.624 0.999 sum -11.948 -5.480 -2.819 13.444 Atomic orbital electron populations 1.21812 0.96124 1.01223 1.01812 1.22348 0.95956 0.99086 1.02121 1.20840 0.95291 0.89344 0.91357 1.58660 1.11708 1.60433 1.03584 1.21586 0.99165 0.97194 0.96095 1.21535 0.96675 0.95684 1.00946 1.21933 0.93168 1.00358 0.90923 1.62104 1.13967 1.11181 1.36049 1.19300 0.80341 0.96120 0.93958 0.94049 1.22362 1.04237 0.96100 1.00022 1.21169 0.92420 0.91856 1.48202 0.91779 1.24926 0.97008 0.97012 0.95267 1.69954 1.03558 1.32367 1.47505 0.86582 0.78534 0.85203 0.77705 1.20964 1.19790 1.21405 1.21957 0.92018 0.92436 0.99527 0.92909 0.92346 0.93138 0.91911 0.92230 0.86109 0.84977 0.92825 0.92783 0.93527 0.90365 0.89988 0.96775 0.90802 0.97141 0.95238 0.93157 0.95693 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.23 37.16 0.34 -1.18 16 2 C -0.15 -1.87 5.17 -26.73 -0.14 -2.01 16 3 C 0.13 1.83 0.60 -131.52 -0.08 1.75 16 4 N -0.81 -11.58 8.04 0.81 0.01 -11.58 16 5 C -0.10 -1.48 4.53 -26.61 -0.12 -1.60 16 6 C -0.11 -1.84 5.93 -26.66 -0.16 -2.00 16 7 C 0.06 1.31 4.75 -3.84 -0.02 1.29 16 8 N -0.51 -11.10 4.53 -228.09 -1.03 -12.13 16 9 C 0.21 5.35 2.30 -68.87 -0.16 5.20 16 10 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 11 C -0.17 -4.11 8.33 37.16 0.31 -3.80 16 12 C -0.50 -13.82 7.89 -34.44 -0.27 -14.09 16 13 H 0.06 1.79 6.29 -52.49 -0.33 1.46 16 14 C 0.06 1.65 5.21 -17.82 -0.09 1.56 16 15 N -0.89 -26.02 11.90 55.43 0.66 -25.36 16 16 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 C 0.07 1.29 3.76 -3.84 -0.01 1.28 16 21 H 0.05 0.49 6.66 -51.93 -0.35 0.15 16 22 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.33 3.92 7.16 -39.29 -0.28 3.64 16 27 H 0.34 4.69 8.99 -39.29 -0.35 4.34 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.69 6.58 -51.93 -0.34 0.35 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.39 7.73 -51.93 -0.40 0.99 16 32 H 0.08 1.83 5.97 -51.93 -0.31 1.52 16 33 H 0.01 0.29 6.67 -51.93 -0.35 -0.05 16 34 H 0.07 1.99 6.58 -51.93 -0.34 1.64 16 35 H 0.01 0.22 6.65 -51.93 -0.35 -0.13 16 36 H 0.03 0.69 6.53 -51.93 -0.34 0.35 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 39 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 LS Contribution 287.28 15.07 4.33 4.33 Total: -1.00 -28.65 287.28 -7.97 -36.62 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.51 Total: 5.07 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -0.40 Total: -13.61 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.37 Total: -49.06 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.65 -7.97 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888106388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.685 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds