Wall clock time and date at job start Mon Mar 30 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47150 * 2 1 4 4 N 1.46898 * 109.50293 * 59.91830 * 3 2 1 5 5 C 1.53122 * 109.50295 * 299.80530 * 3 2 1 6 6 C 1.53116 * 109.16011 * 182.40514 * 5 3 2 7 7 C 1.53032 * 109.27944 * 57.65132 * 6 5 3 8 8 N 1.46842 * 109.52623 * 300.81959 * 7 6 5 9 9 C 1.46895 * 111.00314 * 185.84186 * 8 7 6 10 10 H 1.09000 * 109.47468 * 175.79162 * 9 8 7 11 11 C 1.53003 * 109.47239 * 295.78895 * 9 8 7 12 12 C 1.50702 * 109.47213 * 55.78919 * 9 8 7 13 13 H 1.08000 * 119.99739 * 356.97338 * 12 9 8 14 14 C 1.37879 * 119.99661 * 176.97732 * 12 9 8 15 15 N 1.31506 * 120.00511 * 352.37729 * 14 12 9 16 16 Si 1.86805 * 119.99696 * 172.65657 * 14 12 9 17 17 H 1.48500 * 109.46981 * 264.79425 * 16 14 12 18 18 H 1.48498 * 109.46931 * 24.79243 * 16 14 12 19 19 H 1.48496 * 109.47367 * 144.79344 * 16 14 12 20 20 C 1.46849 * 111.19592 * 61.74184 * 8 7 6 21 21 H 1.08992 * 109.47255 * 299.99975 * 1 2 3 22 22 H 1.09002 * 109.47384 * 60.00424 * 1 2 3 23 23 H 1.09003 * 109.47035 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47363 * 239.99982 * 2 1 3 25 25 H 1.09001 * 109.46956 * 119.99900 * 2 1 3 26 26 H 1.00903 * 111.00138 * 300.08326 * 4 3 2 27 27 H 1.00901 * 110.99793 * 64.03533 * 4 3 2 28 28 H 1.09006 * 109.52007 * 302.30561 * 5 3 2 29 29 H 1.09002 * 109.52551 * 62.49218 * 5 3 2 30 30 H 1.09000 * 109.50425 * 177.59276 * 6 5 3 31 31 H 1.09001 * 109.50213 * 297.66755 * 6 5 3 32 32 H 1.08999 * 109.46228 * 180.80541 * 7 6 5 33 33 H 1.09004 * 109.46506 * 60.83906 * 7 6 5 34 34 H 1.08994 * 109.47758 * 177.99722 * 11 9 8 35 35 H 1.09001 * 109.47246 * 298.00101 * 11 9 8 36 36 H 1.09006 * 109.47149 * 57.99443 * 11 9 8 37 37 H 0.96998 * 120.00675 * 180.27806 * 15 14 12 38 38 H 1.08998 * 109.46554 * 58.27864 * 20 8 7 39 39 H 1.09003 * 109.46119 * 178.24144 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5491 2.1362 1.1982 5 6 1.5340 2.1636 -1.2524 6 6 2.0978 3.5870 -1.2750 7 6 3.6264 3.5257 -1.2380 8 7 4.0603 2.8275 -0.0213 9 6 5.5220 2.8708 0.1177 10 1 5.8109 2.4123 1.0634 11 6 6.1672 2.1042 -1.0387 12 6 5.9870 4.3041 0.0916 13 1 5.2743 5.1001 -0.0663 14 6 7.3221 4.5990 0.2691 15 7 8.1657 3.6494 0.6095 16 14 7.9312 6.3492 0.0339 17 1 8.4484 6.5117 -1.3486 18 1 6.8107 7.2976 0.2579 19 1 9.0187 6.6297 1.0054 20 6 3.5703 1.4434 0.0000 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5404 2.1488 1.2210 27 1 1.9246 1.7192 2.0368 28 1 1.8656 1.6263 -2.1410 29 1 0.4449 2.2033 -1.2350 30 1 1.7757 4.0916 -2.1860 31 1 1.7338 4.1364 -0.4067 32 1 4.0306 4.5380 -1.2396 33 1 3.9897 2.9885 -2.1142 34 1 7.2522 2.1663 -0.9554 35 1 5.8589 1.0595 -0.9989 36 1 5.8499 2.5407 -1.9858 37 1 9.1043 3.8576 0.7384 38 1 3.9338 0.9158 -0.8818 39 1 3.9338 0.9432 0.8977 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888106388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:55 Heat of formation + Delta-G solvation = -25.928640 kcal Electronic energy + Delta-G solvation = -16998.094763 eV Core-core repulsion = 14553.119868 eV Total energy + Delta-G solvation = -2444.974895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61769 -37.47989 -34.76976 -33.22256 -31.52653 -30.29105 -29.09067 -27.22091 -25.60885 -24.12987 -22.82809 -20.92579 -19.62253 -18.11068 -17.10903 -16.53978 -16.06335 -15.77369 -15.42853 -15.20828 -15.03435 -14.56638 -14.31839 -13.69956 -13.49694 -13.28381 -13.09797 -12.81510 -12.70064 -12.59655 -12.39207 -12.19230 -12.11536 -11.96671 -11.68162 -11.54050 -11.28818 -10.87398 -10.71526 -10.43852 -9.21590 -8.63643 -8.11640 -6.18374 1.41942 1.42708 1.54027 2.44410 3.19259 3.38059 3.78010 3.89239 4.02042 4.16556 4.35339 4.38191 4.47757 4.65602 4.72467 4.76066 4.80138 4.82577 4.87389 4.94790 5.02656 5.05467 5.12261 5.18342 5.20423 5.31220 5.35772 5.48014 5.58662 5.64281 5.75261 5.79527 6.21506 6.52956 6.60499 6.88316 6.92912 6.98439 7.49971 8.97601 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046683 B = 0.007214 C = 0.006843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.650163 B = 3880.508261 C = 4090.518770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.149 4.149 3 C 0.132 3.868 4 N -0.826 5.826 5 C -0.099 4.099 6 C -0.102 4.102 7 C 0.066 3.934 8 N -0.517 5.517 9 C 0.213 3.787 10 H 0.003 0.997 11 C -0.152 4.152 12 C -0.512 4.512 13 H 0.058 0.942 14 C 0.011 3.989 15 N -0.924 5.924 16 Si 0.956 3.044 17 H -0.276 1.276 18 H -0.268 1.268 19 H -0.284 1.284 20 C 0.068 3.932 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.342 0.658 27 H 0.338 0.662 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.009 0.991 34 H 0.046 0.954 35 H 0.026 0.974 36 H 0.031 0.969 37 H 0.260 0.740 38 H 0.019 0.981 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.777 -5.702 -3.039 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.189 4.189 3 C 0.038 3.962 4 N -0.357 5.357 5 C -0.137 4.137 6 C -0.140 4.140 7 C -0.062 4.062 8 N -0.240 5.240 9 C 0.106 3.894 10 H 0.020 0.980 11 C -0.211 4.211 12 C -0.551 4.551 13 H 0.076 0.924 14 C -0.188 4.188 15 N -0.564 5.564 16 Si 0.782 3.218 17 H -0.202 1.202 18 H -0.193 1.193 19 H -0.210 1.210 20 C -0.061 4.061 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.157 0.843 27 H 0.151 0.849 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.431 -4.822 -2.880 15.486 hybrid contribution 1.078 -0.669 -0.387 1.326 sum -13.353 -5.491 -3.267 14.803 Atomic orbital electron populations 1.21778 0.93979 1.02302 1.02397 1.22254 0.97700 0.96835 1.02092 1.20716 0.92207 0.91370 0.91859 1.58598 1.13003 1.60712 1.03424 1.21591 1.00749 0.95416 0.95944 1.21455 0.93459 0.97523 1.01568 1.21926 0.95974 0.98442 0.89882 1.62014 1.11402 1.13476 1.37110 1.19047 0.83123 0.94908 0.92371 0.97953 1.22143 1.02180 0.97061 0.99725 1.21424 0.92687 0.92790 1.48173 0.92418 1.25701 0.97175 1.00948 0.94927 1.70076 1.03784 1.34315 1.48191 0.85571 0.77952 0.80484 0.77813 1.20212 1.19292 1.21029 1.22060 0.95154 0.90215 0.98634 0.92171 0.91843 0.91912 0.92014 0.92326 0.84337 0.84919 0.92442 0.89967 0.91390 0.91362 0.92650 0.97335 0.93518 0.95466 0.94947 0.93080 0.96257 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.23 71.98 0.66 -1.74 16 2 C -0.15 -3.22 5.17 30.59 0.16 -3.06 16 3 C 0.13 3.60 0.60 3.58 0.00 3.61 16 4 N -0.83 -21.97 8.04 -151.36 -1.22 -23.19 16 5 C -0.10 -2.58 4.53 30.67 0.14 -2.44 16 6 C -0.10 -3.20 5.93 30.64 0.18 -3.02 16 7 C 0.07 2.67 4.75 86.32 0.41 3.08 16 8 N -0.52 -22.77 4.53 -875.54 -3.96 -26.73 16 9 C 0.21 11.25 2.30 44.17 0.10 11.35 16 10 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 11 C -0.15 -7.59 8.33 71.98 0.60 -6.99 16 12 C -0.51 -29.12 7.89 25.60 0.20 -28.92 16 13 H 0.06 3.29 6.29 -2.91 -0.02 3.27 16 14 C 0.01 0.61 5.21 84.66 0.44 1.05 16 15 N -0.92 -54.95 11.90 21.45 0.26 -54.70 16 16 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 20 C 0.07 2.51 3.76 86.32 0.32 2.84 16 21 H 0.06 0.90 6.66 -2.39 -0.02 0.88 16 22 H 0.06 0.99 6.49 -2.39 -0.02 0.97 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.34 7.23 7.16 -89.69 -0.64 6.58 16 27 H 0.34 8.98 8.99 -89.69 -0.81 8.18 16 28 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.08 1.73 6.58 -2.39 -0.02 1.72 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 2.30 7.73 -2.39 -0.02 2.28 16 32 H 0.06 2.51 5.97 -2.39 -0.01 2.49 16 33 H 0.01 0.35 6.67 -2.38 -0.02 0.34 16 34 H 0.05 2.57 6.58 -2.39 -0.02 2.56 16 35 H 0.03 1.22 6.65 -2.39 -0.02 1.20 16 36 H 0.03 1.55 6.53 -2.38 -0.02 1.54 16 37 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.02 0.73 6.68 -2.39 -0.02 0.71 16 39 H 0.05 1.85 8.12 -2.39 -0.02 1.83 16 Total: -1.00 -62.38 287.28 -0.09 -62.46 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.41 Total: 19.46 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 3.22 Total: -24.24 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -4.93 Total: -104.62 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -62.38 -0.09 -62.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888106388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.533 kcal (2) G-P(sol) polarization free energy of solvation -62.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds