Wall clock time and date at job start Mon Mar 30 2020 03:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47022 * 2 1 4 4 N 1.46894 * 109.53851 * 305.10175 * 3 2 1 5 5 C 1.53120 * 109.50087 * 65.19982 * 3 2 1 6 6 C 1.53124 * 109.16289 * 177.59299 * 5 3 2 7 7 C 1.53040 * 109.27510 * 302.34803 * 6 5 3 8 8 N 1.46844 * 109.52694 * 59.17476 * 7 6 5 9 9 C 1.46894 * 111.00107 * 174.15699 * 8 7 6 10 10 H 1.08997 * 109.47288 * 174.92773 * 9 8 7 11 11 C 1.52994 * 109.47479 * 294.93028 * 9 8 7 12 12 C 1.50700 * 109.46783 * 54.93122 * 9 8 7 13 13 H 1.08006 * 120.00259 * 354.59318 * 12 9 8 14 14 C 1.37886 * 120.00066 * 174.59698 * 12 9 8 15 15 N 1.31513 * 119.99842 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 119.99864 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47531 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47175 * 120.00162 * 16 14 12 19 19 H 1.48509 * 109.46841 * 239.99556 * 16 14 12 20 20 C 1.46848 * 111.20030 * 298.25921 * 8 7 6 21 21 H 1.09000 * 109.47243 * 299.99932 * 1 2 3 22 22 H 1.09002 * 109.46955 * 59.99560 * 1 2 3 23 23 H 1.09004 * 109.47277 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46628 * 240.00498 * 2 1 3 25 25 H 1.09002 * 109.46955 * 120.00440 * 2 1 3 26 26 H 1.00906 * 111.00352 * 59.89634 * 4 3 2 27 27 H 1.00896 * 111.00147 * 183.85356 * 4 3 2 28 28 H 1.09002 * 109.52695 * 57.68399 * 5 3 2 29 29 H 1.09006 * 109.57499 * 297.52719 * 5 3 2 30 30 H 1.08998 * 109.50549 * 182.40424 * 6 5 3 31 31 H 1.08999 * 109.53109 * 62.30370 * 6 5 3 32 32 H 1.09003 * 109.45991 * 299.15845 * 7 6 5 33 33 H 1.08997 * 109.44932 * 179.18626 * 7 6 5 34 34 H 1.09007 * 109.47423 * 59.99976 * 11 9 8 35 35 H 1.09002 * 109.47302 * 179.97438 * 11 9 8 36 36 H 1.08999 * 109.47433 * 299.99731 * 11 9 8 37 37 H 0.96999 * 119.99779 * 180.02562 * 15 14 12 38 38 H 1.08993 * 109.46374 * 181.75837 * 20 8 7 39 39 H 1.08994 * 109.46076 * 301.72916 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4532 2.1710 -1.1326 5 6 1.6396 2.1262 1.3103 6 6 2.2050 3.5491 1.3279 7 6 3.7254 3.4907 1.1636 8 7 4.0570 2.8287 -0.1045 9 6 5.5024 2.8777 -0.3618 10 1 5.7313 2.3036 -1.2595 11 6 5.9359 4.3313 -0.5617 12 6 6.2417 2.2899 0.8125 13 1 5.7003 1.9977 1.7002 14 6 7.6095 2.1253 0.7537 15 7 8.2687 2.4808 -0.3273 16 14 8.5258 1.3961 2.2090 17 1 7.5617 1.0808 3.2936 18 1 9.2187 0.1530 1.7852 19 1 9.5258 2.3754 2.7054 20 6 3.5652 1.4451 -0.1257 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8900 26 1 0.4461 2.1831 -1.0721 27 1 1.8232 3.1079 -1.1906 28 1 2.0423 1.5637 2.1526 29 1 0.5528 2.1652 1.3846 30 1 1.9595 4.0265 2.2765 31 1 1.7722 4.1234 0.5087 32 1 4.1587 2.9286 1.9909 33 1 4.1294 4.5031 1.1613 34 1 5.7070 4.9055 0.3362 35 1 7.0085 4.3676 -0.7521 36 1 5.4011 4.7564 -1.4110 37 1 9.2308 2.3647 -0.3688 38 1 3.8531 0.9718 -1.0643 39 1 3.9992 0.8927 0.7076 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888106389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:58 Heat of formation + Delta-G solvation = -29.346164 kcal Electronic energy + Delta-G solvation = -17083.862509 eV Core-core repulsion = 14638.739419 eV Total energy + Delta-G solvation = -2445.123090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69620 -37.39196 -34.73130 -33.12506 -31.55701 -30.77253 -28.88486 -27.21935 -25.58922 -23.99195 -22.78804 -21.00735 -19.65093 -18.17879 -17.33168 -16.62645 -16.13120 -16.02463 -15.48565 -15.03485 -14.94567 -14.59137 -13.98214 -13.76606 -13.45413 -13.22778 -13.07751 -12.97512 -12.75463 -12.51457 -12.38150 -12.20265 -11.98979 -11.90455 -11.70600 -11.64075 -11.30476 -11.09242 -10.79665 -10.51572 -9.35939 -8.90049 -8.07285 -6.28673 1.33351 1.35895 1.45690 2.37544 3.13528 3.36118 3.72523 3.90509 4.03975 4.18976 4.25225 4.43381 4.47544 4.66934 4.75391 4.80220 4.81926 4.89776 5.00942 5.02807 5.08116 5.10446 5.17424 5.18936 5.27202 5.28172 5.36154 5.44513 5.51434 5.60117 5.69409 5.94448 6.18257 6.35648 6.51506 6.70546 6.89999 6.93744 7.42497 8.90569 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033024 B = 0.008223 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.653341 B = 3404.435839 C = 3648.031190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C 0.132 3.868 4 N -0.834 5.834 5 C -0.141 4.141 6 C -0.110 4.110 7 C 0.059 3.941 8 N -0.525 5.525 9 C 0.210 3.790 10 H 0.002 0.998 11 C -0.112 4.112 12 C -0.548 4.548 13 H 0.049 0.951 14 C 0.019 3.981 15 N -0.915 5.915 16 Si 0.947 3.053 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.278 1.278 20 C 0.083 3.917 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.342 0.658 27 H 0.347 0.653 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.011 0.989 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.047 0.953 36 H 0.032 0.968 37 H 0.262 0.738 38 H 0.044 0.956 39 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.746 -0.789 2.938 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C 0.039 3.961 4 N -0.367 5.367 5 C -0.181 4.181 6 C -0.148 4.148 7 C -0.069 4.069 8 N -0.249 5.249 9 C 0.102 3.898 10 H 0.020 0.980 11 C -0.170 4.170 12 C -0.587 4.587 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.555 5.555 16 Si 0.773 3.227 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.204 1.204 20 C -0.047 4.047 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.157 0.843 27 H 0.163 0.837 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -14.461 -1.076 2.014 14.641 hybrid contribution 1.400 -0.261 1.956 2.420 sum -13.061 -1.337 3.969 13.716 Atomic orbital electron populations 1.21737 0.93812 1.02262 1.02276 1.21501 0.97599 0.94504 1.01300 1.20682 0.92009 0.94236 0.89192 1.58807 1.10526 1.22979 1.44372 1.22362 1.01271 0.96210 0.98238 1.21609 0.93866 0.97176 1.02185 1.21979 0.95869 0.98440 0.90638 1.62303 1.15398 1.15347 1.31831 1.19042 0.83193 0.93487 0.94046 0.97982 1.21540 1.00526 0.96884 0.98093 1.21961 0.93070 1.41558 1.02104 0.93237 1.25653 0.98606 0.95757 0.98060 1.70042 1.08249 1.48458 1.28702 0.85678 0.78674 0.78256 0.80061 1.19675 1.20697 1.20375 1.21837 0.94307 0.89968 0.98547 0.92054 0.91673 0.92053 0.92649 0.92441 0.84342 0.83749 0.93057 0.89649 0.90511 0.91013 0.97033 0.92064 0.94748 0.93449 0.94936 0.92893 0.93734 0.97108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.21 71.98 0.66 -2.07 16 2 C -0.11 -2.87 5.16 30.60 0.16 -2.71 16 3 C 0.13 3.90 0.71 3.58 0.00 3.90 16 4 N -0.83 -22.72 8.67 -151.36 -1.31 -24.04 16 5 C -0.14 -3.71 4.65 30.68 0.14 -3.57 16 6 C -0.11 -3.10 5.76 30.65 0.18 -2.92 16 7 C 0.06 2.26 4.79 86.33 0.41 2.67 16 8 N -0.53 -22.27 3.91 -875.56 -3.42 -25.69 16 9 C 0.21 10.82 2.22 44.17 0.10 10.92 16 10 H 0.00 0.13 8.00 -2.39 -0.02 0.11 16 11 C -0.11 -5.51 8.93 71.98 0.64 -4.87 16 12 C -0.55 -30.25 7.17 25.60 0.18 -30.07 16 13 H 0.05 2.76 5.85 -2.91 -0.02 2.74 16 14 C 0.02 1.06 5.32 84.66 0.45 1.51 16 15 N -0.92 -53.53 11.73 21.45 0.25 -53.28 16 16 Si 0.95 44.28 29.54 68.60 2.03 46.30 16 17 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 C 0.08 3.32 4.12 86.33 0.36 3.67 16 21 H 0.06 1.05 6.63 -2.39 -0.02 1.03 16 22 H 0.06 1.18 6.61 -2.39 -0.02 1.17 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.34 7.34 7.04 -89.69 -0.63 6.71 16 27 H 0.35 10.24 6.76 -89.70 -0.61 9.63 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 1.77 6.70 -2.38 -0.02 1.76 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 1.87 6.90 -2.39 -0.02 1.86 16 32 H 0.01 0.49 6.32 -2.39 -0.02 0.48 16 33 H 0.06 2.40 6.18 -2.39 -0.01 2.39 16 34 H 0.03 1.59 6.41 -2.38 -0.02 1.57 16 35 H 0.05 2.56 6.51 -2.39 -0.02 2.54 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.04 1.97 8.02 -2.39 -0.02 1.95 16 39 H 0.01 0.48 7.36 -2.39 -0.02 0.46 16 Total: -1.00 -59.92 285.68 0.63 -59.30 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.20 Total: 20.95 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 3.29 Total: -23.53 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -4.49 Total: -103.01 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -59.92 0.63 -59.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888106389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.949 kcal (2) G-P(sol) polarization free energy of solvation -59.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds