Wall clock time and date at job start Mon Mar 30 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00010 * 2 1 4 4 C 1.50695 * 109.47347 * 66.04661 * 3 2 1 5 5 H 1.07999 * 119.99983 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00325 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00211 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99762 * 359.97438 * 6 4 3 9 9 H 1.48507 * 109.47188 * 90.00435 * 8 6 4 10 10 H 1.48505 * 109.47435 * 209.99945 * 8 6 4 11 11 H 1.48497 * 109.47155 * 330.00246 * 8 6 4 12 12 C 1.46902 * 111.00233 * 236.04149 * 2 1 3 13 13 C 1.52998 * 109.47262 * 298.95513 * 12 2 1 14 14 C 1.53002 * 109.47133 * 179.97438 * 13 12 2 15 15 C 1.52998 * 109.47101 * 300.00265 * 14 13 12 16 16 C 1.52998 * 109.47258 * 299.99753 * 15 14 13 17 17 N 1.46905 * 109.46978 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47343 * 59.99864 * 15 14 13 19 19 C 1.52998 * 109.46613 * 58.95558 * 12 2 1 20 20 H 1.09000 * 109.47312 * 183.95601 * 1 2 3 21 21 H 1.09002 * 109.47475 * 303.95497 * 1 2 3 22 22 H 1.08996 * 109.47419 * 63.95608 * 1 2 3 23 23 H 1.09007 * 109.47378 * 186.04309 * 3 2 1 24 24 H 1.09004 * 109.47224 * 306.04179 * 3 2 1 25 25 H 0.96996 * 120.00091 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.46894 * 178.95110 * 12 2 1 27 27 H 1.09008 * 109.46844 * 59.99993 * 13 12 2 28 28 H 1.08991 * 109.46935 * 299.99865 * 13 12 2 29 29 H 1.08994 * 109.46973 * 179.97438 * 14 13 12 30 30 H 1.08996 * 109.46535 * 59.99895 * 14 13 12 31 31 H 1.09002 * 109.46981 * 300.00200 * 16 15 14 32 32 H 1.08999 * 109.46856 * 60.00119 * 16 15 14 33 33 H 1.09001 * 109.47204 * 179.97438 * 16 15 14 34 34 H 1.00901 * 110.99869 * 180.02562 * 17 15 14 35 35 H 1.00896 * 110.99543 * 303.95346 * 17 15 14 36 36 H 1.09004 * 109.47079 * 60.00068 * 18 15 14 37 37 H 1.09001 * 109.47396 * 179.97438 * 18 15 14 38 38 H 1.08998 * 109.47647 * 299.99951 * 19 12 2 39 39 H 1.09002 * 109.47288 * 59.99906 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5115 2.0484 6 6 2.0267 3.3495 1.5284 7 7 1.7135 3.9393 2.6614 8 14 2.9999 4.2761 0.2309 9 1 2.0632 4.9798 -0.6818 10 1 3.8863 5.2679 0.8912 11 1 3.8238 3.3175 -0.5484 12 6 1.9955 -0.7661 -1.1375 13 6 1.5263 -2.2187 -1.0350 14 6 2.0742 -3.0164 -2.2201 15 6 1.5620 -2.4060 -3.5262 16 6 0.0328 -2.4505 -3.5448 17 7 2.0885 -3.1716 -4.6641 18 6 2.0311 -0.9533 -3.6287 19 6 1.4837 -0.1558 -2.4438 20 1 -0.3634 -1.0252 0.0709 21 1 -0.3634 0.5740 0.8524 22 1 -0.3634 0.4512 -0.9233 23 1 3.0797 1.3444 -0.1082 24 1 1.5611 1.9273 -0.8310 25 1 1.9880 4.8554 2.8233 26 1 3.0849 -0.7342 -1.1239 27 1 0.4368 -2.2505 -1.0487 28 1 1.8909 -2.6534 -0.1044 29 1 1.7403 -4.0514 -2.1468 30 1 3.1636 -2.9846 -2.2069 31 1 -0.3015 -3.4855 -3.4718 32 1 -0.3575 -1.8823 -2.7006 33 1 -0.3321 -2.0152 -4.4751 34 1 1.7646 -2.7875 -5.5392 35 1 3.0964 -3.2111 -4.6379 36 1 3.1206 -0.9216 -3.6155 37 1 1.6666 -0.5185 -4.5594 38 1 0.3943 -0.1875 -2.4575 39 1 1.8179 0.8792 -2.5169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888106427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:01 Heat of formation + Delta-G solvation = -8.323197 kcal Electronic energy + Delta-G solvation = -16789.661955 eV Core-core repulsion = 14345.450489 eV Total energy + Delta-G solvation = -2444.211466 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.82313 -36.52952 -32.95100 -31.79085 -30.70460 -28.77608 -27.88389 -26.29538 -24.50227 -22.71310 -21.36448 -19.54015 -18.30533 -16.90337 -16.06864 -15.55271 -14.88972 -14.53133 -14.47727 -14.13478 -13.37604 -13.09302 -12.86149 -12.57857 -12.34824 -12.05594 -11.94314 -11.58499 -11.50172 -11.19166 -11.09907 -10.90797 -10.82969 -10.53405 -10.23738 -10.08175 -9.83915 -9.73580 -9.25842 -8.72187 -8.56733 -7.28110 -6.04737 -4.01417 3.26898 3.34845 3.36803 4.35408 4.41875 4.69750 4.72395 4.90892 5.17393 5.24247 5.27579 5.37067 5.47239 5.57013 5.64292 5.72559 5.86750 5.92020 5.98643 6.02928 6.10080 6.13586 6.20178 6.23549 6.33098 6.41415 6.54978 6.67900 6.74059 6.90751 7.03868 7.08834 7.33932 7.62831 7.94884 8.10309 8.68187 9.04446 9.57447 11.08576 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.043848 B = 0.006892 C = 0.006413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.413158 B = 4061.552607 C = 4364.792889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.524 5.524 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.083 3.917 13 C -0.112 4.112 14 C -0.102 4.102 15 C 0.115 3.885 16 C -0.140 4.140 17 N -0.842 5.842 18 C -0.139 4.139 19 C -0.153 4.153 20 H 0.050 0.950 21 H 0.077 0.923 22 H 0.014 0.986 23 H 0.025 0.975 24 H -0.015 1.015 25 H 0.263 0.737 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.337 0.663 35 H 0.338 0.662 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 -11.694 -13.609 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.246 5.246 3 C 0.035 3.965 4 C -0.546 4.546 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.026 4.026 13 C -0.150 4.150 14 C -0.140 4.140 15 C 0.023 3.977 16 C -0.197 4.197 17 N -0.370 5.370 18 C -0.180 4.180 19 C -0.193 4.193 20 H 0.069 0.931 21 H 0.096 0.904 22 H 0.033 0.967 23 H 0.043 0.957 24 H 0.003 0.997 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.504 -12.371 -12.743 17.768 hybrid contribution 0.799 2.113 -1.726 2.843 sum 0.294 -10.258 -14.470 17.739 Atomic orbital electron populations 1.22322 0.88741 0.99982 1.00747 1.62178 1.07272 1.16303 1.38866 1.20175 0.95044 0.84401 0.96848 1.21069 1.35368 0.97151 1.01018 0.90131 1.24895 0.95789 0.97375 0.95279 1.69893 1.47000 1.13227 1.23920 0.86884 0.80678 0.80063 0.82244 1.20428 1.21136 1.19249 1.21731 0.99292 0.93213 0.88358 1.21643 1.01057 0.94625 0.97647 1.21496 1.00192 0.99276 0.93038 1.20810 0.95258 0.90416 0.91218 1.21894 0.94056 1.02081 1.01716 1.58999 1.14742 1.58320 1.04950 1.22285 1.00556 0.96536 0.98580 1.22257 1.01532 0.99739 0.95745 0.93145 0.90406 0.96750 0.95666 0.99747 0.92702 0.90997 0.91516 0.91085 0.91424 0.92345 0.92194 0.91345 0.93336 0.85124 0.84988 0.92350 0.92727 0.91280 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 8.63 60.06 0.52 1.10 16 2 N -0.52 -10.90 4.74 -236.34 -1.12 -12.03 16 3 C 0.16 3.94 3.23 -4.98 -0.02 3.92 16 4 C -0.51 -14.52 9.01 -34.44 -0.31 -14.83 16 5 H 0.08 2.50 7.37 -52.49 -0.39 2.12 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 8 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 12 C 0.08 1.40 2.23 -67.71 -0.15 1.25 16 13 C -0.11 -1.56 4.73 -26.73 -0.13 -1.69 16 14 C -0.10 -1.21 4.99 -26.73 -0.13 -1.34 16 15 C 0.12 1.29 0.97 -131.60 -0.13 1.16 16 16 C -0.14 -1.56 8.07 37.16 0.30 -1.26 16 17 N -0.84 -8.18 8.88 0.74 0.01 -8.17 16 18 C -0.14 -1.72 5.02 -26.75 -0.13 -1.85 16 19 C -0.15 -2.34 4.24 -26.75 -0.11 -2.46 16 20 H 0.05 0.82 6.33 -51.93 -0.33 0.50 16 21 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 22 H 0.01 0.26 6.28 -51.93 -0.33 -0.07 16 23 H 0.03 0.63 7.06 -51.92 -0.37 0.27 16 24 H -0.02 -0.37 6.36 -51.93 -0.33 -0.70 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 27 H 0.07 0.92 4.71 -51.92 -0.24 0.67 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.82 4.81 -51.93 -0.25 0.57 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.34 2.88 9.00 -39.29 -0.35 2.53 16 35 H 0.34 2.97 8.98 -39.29 -0.35 2.61 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.05 4.67 -51.93 -0.24 0.81 16 39 H 0.06 1.08 6.75 -51.93 -0.35 0.73 16 LS Contribution 284.79 15.07 4.29 4.29 Total: -1.00 -30.01 284.79 -7.53 -37.55 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.43 Total: 2.44 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -0.39 Total: -14.12 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.34 Total: -47.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.01 -7.53 -37.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888106427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.226 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds