Wall clock time and date at job start Mon Mar 30 2020 03:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.46916 * 2 1 4 4 N 1.46896 * 109.47303 * 179.97438 * 3 2 1 5 5 C 1.46948 * 111.00183 * 170.00144 * 4 3 2 6 6 C 1.53049 * 109.36764 * 183.19149 * 5 4 3 7 7 N 1.46961 * 109.36177 * 301.59566 * 6 5 4 8 8 C 1.46896 * 111.00124 * 183.18463 * 7 6 5 9 9 C 1.52996 * 109.47256 * 170.00033 * 8 7 6 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.46956 * 110.87704 * 59.32220 * 7 6 5 19 19 C 1.46963 * 111.00029 * 293.80323 * 4 3 2 20 20 H 1.08996 * 109.47838 * 299.99511 * 1 2 3 21 21 H 1.09002 * 109.47512 * 60.00317 * 1 2 3 22 22 H 1.09007 * 109.46823 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47838 * 240.00489 * 2 1 3 24 24 H 1.09002 * 109.47512 * 119.99683 * 2 1 3 25 25 H 1.09003 * 109.46860 * 59.99562 * 3 2 1 26 26 H 1.08995 * 109.47005 * 299.99852 * 3 2 1 27 27 H 1.08999 * 109.48998 * 63.22220 * 5 4 3 28 28 H 1.09002 * 109.48626 * 303.15745 * 5 4 3 29 29 H 1.09001 * 109.49268 * 181.63226 * 6 5 4 30 30 H 1.09000 * 109.49067 * 61.56179 * 6 5 4 31 31 H 1.09004 * 109.46774 * 50.00232 * 8 7 6 32 32 H 1.09000 * 109.47723 * 290.00621 * 8 7 6 33 33 H 1.09004 * 109.47066 * 60.00378 * 9 8 7 34 34 H 1.08994 * 109.47405 * 300.00209 * 9 8 7 35 35 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.49195 * 60.64478 * 18 7 6 37 37 H 1.09002 * 109.48564 * 180.71036 * 18 7 6 38 38 H 1.09000 * 109.48524 * 296.77653 * 19 4 3 39 39 H 1.09001 * 109.48867 * 56.84120 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 0.0006 5 6 4.0356 2.7937 -0.2375 6 6 5.5634 2.7377 -0.3086 7 7 6.0895 2.1843 0.9470 8 6 7.5585 2.1843 0.9476 9 6 8.0680 1.8404 2.3487 10 6 9.5750 1.8411 2.3494 11 1 10.1154 2.0648 1.4415 12 6 10.2639 1.5622 3.5108 13 7 9.6059 1.2902 4.6165 14 14 12.1319 1.5705 3.5135 15 1 12.6203 2.9331 3.8450 16 1 12.6297 0.6061 4.5271 17 1 12.6307 1.1789 2.1707 18 6 5.5629 0.8331 1.1852 19 6 4.0351 0.8892 1.2562 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6765 1.9564 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.7333 3.4508 0.5779 28 1 3.6415 3.1769 -1.1789 29 1 5.9577 3.7430 -0.4563 30 1 5.8656 2.1022 -1.1410 31 1 7.9219 3.1711 0.6609 32 1 7.9222 1.4425 0.2366 33 1 7.7046 0.8536 2.6354 34 1 7.7044 2.5822 3.0597 35 1 10.0906 1.0936 5.4335 36 1 5.8651 0.1760 0.3697 37 1 5.9569 0.4500 2.1265 38 1 3.7328 1.5247 2.0886 39 1 3.6407 -0.1162 1.4039 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019425222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:34 Heat of formation + Delta-G solvation = -7.476633 kcal Electronic energy + Delta-G solvation = -15943.745856 eV Core-core repulsion = 13499.571100 eV Total energy + Delta-G solvation = -2444.174756 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.09790 -36.13467 -33.56548 -32.54370 -30.66209 -29.77162 -27.06066 -24.64257 -23.48382 -23.18891 -20.96520 -20.27722 -19.38072 -16.55094 -15.81478 -15.49423 -14.63706 -14.60396 -14.51936 -14.22346 -13.94977 -13.63402 -13.08225 -12.56963 -12.32854 -12.08230 -11.89063 -11.54133 -11.48062 -11.04943 -11.00277 -10.91963 -10.83587 -10.64772 -10.45304 -10.26176 -9.79503 -9.31017 -9.09317 -8.31260 -8.24956 -7.66776 -5.97684 -3.99858 3.33581 3.39595 3.42958 3.95357 4.40797 4.58563 4.79926 4.94643 5.10081 5.25795 5.35036 5.37580 5.38324 5.49863 5.58518 5.60713 5.70216 5.73099 5.81990 5.89245 5.95799 6.08846 6.14716 6.20328 6.23651 6.36400 6.46375 6.54898 6.99957 7.13620 7.16284 7.55589 7.61763 7.83047 7.92656 8.10866 8.46094 9.07375 9.63603 11.13739 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.057665 B = 0.004675 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.445973 B = 5987.489225 C = 6300.831651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.056 3.944 4 N -0.542 5.542 5 C 0.060 3.940 6 C 0.056 3.944 7 N -0.541 5.541 8 C 0.064 3.936 9 C 0.028 3.972 10 C -0.521 4.521 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.057 3.943 19 C 0.057 3.943 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.034 0.966 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.303 -0.401 -9.137 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.267 5.267 5 C -0.068 4.068 6 C -0.073 4.073 7 N -0.266 5.266 8 C -0.063 4.063 9 C -0.009 4.009 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.071 4.071 19 C -0.071 4.071 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.266 -0.440 -8.955 17.704 hybrid contribution 1.063 0.026 0.096 1.068 sum -14.203 -0.413 -8.859 16.745 Atomic orbital electron populations 1.21735 0.95842 1.01614 1.01618 1.21545 0.95103 0.96617 1.02761 1.22116 0.87624 0.97041 1.00455 1.62183 1.06928 1.22325 1.35308 1.22132 0.95286 0.89101 1.00300 1.22111 0.93573 0.99883 0.91709 1.62260 1.10105 1.21674 1.32556 1.22315 0.83417 0.99603 1.00962 1.19091 0.94887 0.97025 0.89922 1.21206 0.91780 1.47503 0.95549 0.92803 1.24995 0.98374 0.95356 0.95605 1.69975 1.35340 1.47753 1.00210 0.86594 0.85842 0.77811 0.77743 1.20664 1.21235 1.19921 1.22159 0.92948 0.90111 1.01892 1.22243 0.95463 0.99556 0.89862 0.92901 0.92834 0.92646 0.91263 0.91825 0.95054 0.91191 0.94200 0.90997 0.90755 0.94741 0.92163 0.96175 0.96505 0.95811 0.93027 0.94763 0.89235 0.94130 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.15 0.37 -0.84 16 2 C -0.12 -1.21 5.87 -26.73 -0.16 -1.37 16 3 C 0.06 0.62 4.96 -3.82 -0.02 0.60 16 4 N -0.54 -7.44 4.71 -234.47 -1.10 -8.54 16 5 C 0.06 0.82 5.61 -3.77 -0.02 0.80 16 6 C 0.06 0.88 5.61 -3.77 -0.02 0.86 16 7 N -0.54 -10.32 4.71 -234.47 -1.10 -11.42 16 8 C 0.06 1.39 4.90 -3.83 -0.02 1.37 16 9 C 0.03 0.74 4.91 -27.88 -0.14 0.61 16 10 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 11 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.06 1.02 5.41 -3.77 -0.02 1.00 16 19 C 0.06 0.84 5.41 -3.76 -0.02 0.82 16 20 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.66 6.49 -51.93 -0.34 0.32 16 25 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 26 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.83 8.07 -51.93 -0.42 0.42 16 29 H 0.07 1.10 8.07 -51.93 -0.42 0.69 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 32 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.02 0.46 6.49 -51.93 -0.34 0.13 16 34 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.75 6.34 -51.93 -0.33 1.42 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.02 6.34 -51.93 -0.33 0.69 16 LS Contribution 304.14 15.07 4.58 4.58 Total: -1.00 -30.14 304.14 -9.56 -39.70 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -7.19 Total: -4.92 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.46 Total: -9.85 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -1.47 Total: -46.34 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.14 -9.56 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019425222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.227 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds