Wall clock time and date at job start Mon Mar 30 2020 03:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.46916 * 2 1 4 4 N 1.46896 * 109.47303 * 179.97438 * 3 2 1 5 5 C 1.46948 * 111.00183 * 170.00144 * 4 3 2 6 6 C 1.53049 * 109.36764 * 183.19149 * 5 4 3 7 7 N 1.46961 * 109.36177 * 301.59566 * 6 5 4 8 8 C 1.46896 * 111.00124 * 183.18463 * 7 6 5 9 9 C 1.52996 * 109.47256 * 170.00033 * 8 7 6 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.46956 * 110.87704 * 59.32220 * 7 6 5 19 19 C 1.46963 * 111.00029 * 293.80323 * 4 3 2 20 20 H 1.08996 * 109.47838 * 299.99511 * 1 2 3 21 21 H 1.09002 * 109.47512 * 60.00317 * 1 2 3 22 22 H 1.09007 * 109.46823 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47838 * 240.00489 * 2 1 3 24 24 H 1.09002 * 109.47512 * 119.99683 * 2 1 3 25 25 H 1.09003 * 109.46860 * 59.99562 * 3 2 1 26 26 H 1.08995 * 109.47005 * 299.99852 * 3 2 1 27 27 H 1.08999 * 109.48998 * 63.22220 * 5 4 3 28 28 H 1.09002 * 109.48626 * 303.15745 * 5 4 3 29 29 H 1.09001 * 109.49268 * 181.63226 * 6 5 4 30 30 H 1.09000 * 109.49067 * 61.56179 * 6 5 4 31 31 H 1.09004 * 109.46774 * 50.00232 * 8 7 6 32 32 H 1.09000 * 109.47723 * 290.00621 * 8 7 6 33 33 H 1.09004 * 109.47066 * 60.00378 * 9 8 7 34 34 H 1.08994 * 109.47405 * 300.00209 * 9 8 7 35 35 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.49195 * 60.64478 * 18 7 6 37 37 H 1.09002 * 109.48564 * 180.71036 * 18 7 6 38 38 H 1.09000 * 109.48524 * 296.77653 * 19 4 3 39 39 H 1.09001 * 109.48867 * 56.84120 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 0.0006 5 6 4.0356 2.7937 -0.2375 6 6 5.5634 2.7377 -0.3086 7 7 6.0895 2.1843 0.9470 8 6 7.5585 2.1843 0.9476 9 6 8.0680 1.8404 2.3487 10 6 9.5750 1.8411 2.3494 11 1 10.1154 2.0648 1.4415 12 6 10.2639 1.5622 3.5108 13 7 9.6059 1.2902 4.6165 14 14 12.1319 1.5705 3.5135 15 1 12.6203 2.9331 3.8450 16 1 12.6297 0.6061 4.5271 17 1 12.6307 1.1789 2.1707 18 6 5.5629 0.8331 1.1852 19 6 4.0351 0.8892 1.2562 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6765 1.9564 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.7333 3.4508 0.5779 28 1 3.6415 3.1769 -1.1789 29 1 5.9577 3.7430 -0.4563 30 1 5.8656 2.1022 -1.1410 31 1 7.9219 3.1711 0.6609 32 1 7.9222 1.4425 0.2366 33 1 7.7046 0.8536 2.6354 34 1 7.7044 2.5822 3.0597 35 1 10.0906 1.0936 5.4335 36 1 5.8651 0.1760 0.3697 37 1 5.9569 0.4500 2.1265 38 1 3.7328 1.5247 2.0886 39 1 3.6407 -0.1162 1.4039 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019425222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:34 Heat of formation + Delta-G solvation = -27.780793 kcal Electronic energy + Delta-G solvation = -15944.626310 eV Core-core repulsion = 13499.571100 eV Total energy + Delta-G solvation = -2445.055210 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36156 -37.44923 -35.29150 -33.96269 -31.94329 -31.54085 -28.44751 -26.18832 -24.77447 -24.64384 -22.11354 -21.81340 -20.71811 -18.61698 -17.16670 -16.59562 -16.47363 -16.01418 -15.64387 -15.48513 -15.40580 -14.99169 -14.33048 -14.22205 -13.74549 -13.29905 -13.25560 -12.91439 -12.78203 -12.52969 -12.48364 -12.31457 -12.22846 -11.95135 -11.83589 -11.64980 -11.38022 -11.21781 -11.13863 -10.54174 -9.37870 -9.18041 -8.20343 -6.31871 1.40210 1.41987 1.53034 2.40232 2.90195 3.05771 3.12987 3.91101 3.93641 4.09921 4.16642 4.24451 4.37095 4.42082 4.49472 4.52904 4.59436 4.68366 4.70234 4.80380 4.83499 4.90948 4.92895 5.00794 5.05941 5.10755 5.23671 5.31775 5.43154 5.44965 5.64451 5.76613 6.01083 6.03845 6.17685 6.30249 6.33119 6.84920 7.37193 8.91878 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.057665 B = 0.004675 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.445973 B = 5987.489225 C = 6300.831651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.056 3.944 4 N -0.549 5.549 5 C 0.064 3.936 6 C 0.055 3.945 7 N -0.553 5.553 8 C 0.080 3.920 9 C 0.037 3.963 10 C -0.546 4.546 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.059 3.941 19 C 0.067 3.933 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.030 0.970 26 H 0.086 0.914 27 H 0.034 0.966 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.018 0.982 33 H -0.006 1.006 34 H -0.009 1.009 35 H 0.264 0.736 36 H 0.031 0.969 37 H 0.061 0.939 38 H 0.030 0.970 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.714 -0.103 -10.574 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.274 5.274 5 C -0.064 4.064 6 C -0.073 4.073 7 N -0.279 5.279 8 C -0.047 4.047 9 C 0.000 4.000 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.069 4.069 19 C -0.061 4.061 20 H 0.072 0.928 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.104 0.896 27 H 0.052 0.948 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.012 0.988 34 H 0.009 0.991 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.702 -0.137 -10.412 18.841 hybrid contribution 1.133 -0.069 0.542 1.258 sum -14.569 -0.206 -9.869 17.598 Atomic orbital electron populations 1.21700 0.94278 1.02278 1.02129 1.21523 0.96428 0.95661 1.02167 1.22206 0.85684 0.98024 1.01168 1.62210 1.08707 1.22336 1.34106 1.22142 0.93571 0.89092 1.01584 1.22224 0.95213 1.00055 0.89800 1.62193 1.08248 1.22446 1.34971 1.21957 0.85538 0.99546 0.97668 1.18910 0.94368 0.94726 0.92017 1.21629 0.92976 1.47746 0.96071 0.92182 1.25978 1.04046 0.94602 0.95053 1.70115 1.37649 1.48412 1.00971 0.85409 0.78946 0.78194 0.78253 1.19691 1.20657 1.18728 1.22095 0.95110 0.89460 1.00227 1.22091 0.93135 1.00483 0.90385 0.92756 0.91946 0.91965 0.91630 0.92644 0.95130 0.89561 0.94795 0.88062 0.89722 0.94715 0.91653 0.96364 0.98780 0.99072 0.92738 0.95069 0.92052 0.95166 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.12 -2.13 5.87 30.60 0.18 -1.95 16 3 C 0.06 1.12 4.96 86.31 0.43 1.55 16 4 N -0.55 -14.07 4.71 -895.72 -4.22 -18.29 16 5 C 0.06 1.62 5.61 86.31 0.48 2.10 16 6 C 0.06 1.67 5.61 86.31 0.48 2.15 16 7 N -0.55 -21.27 4.71 -895.72 -4.22 -25.49 16 8 C 0.08 3.57 4.90 86.30 0.42 3.99 16 9 C 0.04 2.05 4.91 29.85 0.15 2.20 16 10 C -0.55 -31.87 9.11 25.60 0.23 -31.63 16 11 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 12 C 0.00 0.07 5.46 84.66 0.46 0.53 16 13 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 14 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 18 C 0.06 2.17 5.41 86.31 0.47 2.64 16 19 C 0.07 1.98 5.41 86.31 0.47 2.44 16 20 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 21 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.05 1.07 6.49 -2.39 -0.02 1.05 16 25 H 0.03 0.63 8.12 -2.39 -0.02 0.61 16 26 H 0.09 1.46 8.03 -2.39 -0.02 1.44 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 2.00 8.07 -2.39 -0.02 1.98 16 29 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 2.80 8.03 -2.38 -0.02 2.78 16 32 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 33 H -0.01 -0.36 6.49 -2.38 -0.02 -0.37 16 34 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 2.55 6.34 -2.39 -0.02 2.54 16 38 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 2.39 6.34 -2.39 -0.02 2.38 16 Total: -1.00 -65.10 304.14 -0.66 -65.76 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 0.98 Total: 5.87 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 4.49 Total: -17.28 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -8.15 Total: -101.21 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.10 -0.66 -65.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019425222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.978 kcal (2) G-P(sol) polarization free energy of solvation -65.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds