Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46922 * 2 1 4 4 H 1.09002 * 109.47118 * 52.99561 * 3 2 1 5 5 C 1.50703 * 109.46994 * 172.99277 * 3 2 1 6 6 H 1.08002 * 120.00326 * 115.63771 * 5 3 2 7 7 C 1.37880 * 119.99752 * 295.63194 * 5 3 2 8 8 N 1.31515 * 120.00064 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99896 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47363 * 60.00232 * 9 7 5 11 11 H 1.48500 * 109.47309 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47240 * 300.00097 * 9 7 5 13 13 N 1.46902 * 109.47405 * 292.99063 * 3 2 1 14 14 C 1.46903 * 110.99826 * 81.06594 * 13 3 2 15 15 C 1.46894 * 110.99923 * 205.02263 * 13 3 2 16 16 C 1.53123 * 109.52266 * 302.00551 * 15 13 3 17 17 C 1.53047 * 109.27323 * 182.50886 * 16 15 13 18 18 N 1.46849 * 109.57738 * 59.08260 * 17 16 15 19 19 C 1.46842 * 111.19875 * 298.29032 * 18 17 16 20 20 C 1.53033 * 109.52610 * 61.74082 * 19 18 17 21 21 H 1.09006 * 109.47216 * 79.59120 * 1 2 3 22 22 H 1.09004 * 109.47037 * 319.59235 * 1 2 3 23 23 H 1.09002 * 109.47052 * 199.58892 * 1 2 3 24 24 H 1.08992 * 109.47230 * 119.99753 * 2 1 3 25 25 H 1.09004 * 109.47104 * 240.00342 * 2 1 3 26 26 H 0.96997 * 119.99976 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47048 * 66.52015 * 14 13 3 28 28 H 1.08997 * 109.46801 * 186.51710 * 14 13 3 29 29 H 1.08997 * 109.47241 * 306.51863 * 14 13 3 30 30 H 1.08998 * 109.52968 * 62.13539 * 15 13 3 31 31 H 1.09003 * 109.50236 * 302.38077 * 16 15 13 32 32 H 1.08997 * 109.50418 * 62.50430 * 16 15 13 33 33 H 1.09003 * 109.40877 * 299.06850 * 17 16 15 34 34 H 1.09002 * 109.45223 * 179.13101 * 17 16 15 35 35 H 1.00898 * 110.99917 * 62.39146 * 18 17 16 36 36 H 1.09001 * 109.46220 * 301.72726 * 19 18 17 37 37 H 1.08998 * 109.45388 * 181.75265 * 19 18 17 38 38 H 1.08993 * 109.50645 * 180.87872 * 20 19 18 39 39 H 1.09007 * 109.53633 * 60.77809 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5779 1.9913 0.8207 5 6 3.5370 1.4461 0.1733 6 1 4.1714 1.8174 -0.6179 7 6 4.0967 0.9754 1.3422 8 7 3.3242 0.5228 2.3056 9 14 5.9522 0.9804 1.5574 10 1 6.4590 2.3722 1.4521 11 1 6.2974 0.4271 2.8915 12 1 6.5756 0.1454 0.4994 13 7 1.6932 2.0846 -1.2750 14 6 0.2999 2.5503 -1.2680 15 6 2.6154 3.1873 -1.5770 16 6 2.5781 4.2117 -0.4395 17 6 3.4930 5.3878 -0.7887 18 7 3.0443 6.0046 -2.0436 19 6 3.1175 5.0525 -3.1591 20 6 2.1903 3.8672 -2.8815 21 1 -0.3634 0.1857 -1.0108 22 1 -0.3633 0.7825 0.6662 23 1 -0.3633 -0.9682 0.3446 24 1 1.8933 -0.5137 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.7180 0.1913 3.1277 27 1 0.1897 3.3558 -0.5420 28 1 0.0343 2.9162 -2.2598 29 1 -0.3579 1.7244 -0.9972 30 1 3.6276 2.7972 -1.6828 31 1 1.5579 4.5722 -0.3077 32 1 2.9215 3.7437 0.4831 33 1 4.5156 5.0290 -0.9058 34 1 3.4568 6.1262 0.0123 35 1 2.1126 6.3800 -1.9490 36 1 4.1418 4.6952 -3.2650 37 1 2.8085 5.5475 -4.0797 38 1 2.2566 3.1532 -3.7024 39 1 1.1635 4.2214 -2.7894 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036301729.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = 9.934369 kcal Electronic energy + Delta-G solvation = -17278.031386 eV Core-core repulsion = 14834.611628 eV Total energy + Delta-G solvation = -2443.419758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.13797 -36.23466 -32.90288 -31.65462 -30.41884 -28.77289 -27.79682 -24.35894 -23.26782 -22.47367 -21.53163 -19.65936 -18.86864 -16.53210 -15.55773 -15.19268 -14.44012 -14.32009 -13.81153 -13.59915 -13.36161 -12.91207 -12.52339 -12.41769 -11.97581 -11.72396 -11.49938 -11.36202 -11.14489 -10.90222 -10.83115 -10.69577 -10.49713 -10.13514 -10.01732 -9.80709 -9.59147 -9.13727 -8.67083 -8.42172 -8.05393 -7.03596 -6.04531 -4.08334 3.29401 3.34497 3.37146 4.39060 4.63484 5.02648 5.27573 5.28273 5.48538 5.62895 5.78532 5.87052 5.90571 6.02864 6.09482 6.22385 6.24913 6.27456 6.28712 6.37382 6.45262 6.48294 6.61208 6.64710 6.89271 6.97052 7.03659 7.16147 7.38379 7.40050 7.58368 7.64679 7.77267 7.85313 8.16362 8.34176 8.64412 8.99521 9.56450 11.02708 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.012128 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.809361 B = 2308.197681 C = 3273.486053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C 0.218 3.782 4 H 0.006 0.994 5 C -0.514 4.514 6 H 0.066 0.934 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.533 5.533 14 C 0.001 3.999 15 C 0.099 3.901 16 C -0.184 4.184 17 C 0.061 3.939 18 N -0.690 5.690 19 C 0.059 3.941 20 C -0.155 4.155 21 H 0.046 0.954 22 H 0.041 0.959 23 H 0.030 0.970 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.261 0.739 27 H 0.012 0.988 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.333 0.667 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 5.881 -6.340 9.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.023 0.977 5 C -0.552 4.552 6 H 0.084 0.916 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.256 5.256 14 C -0.148 4.148 15 C -0.009 4.009 16 C -0.224 4.224 17 C -0.069 4.069 18 N -0.317 5.317 19 C -0.071 4.071 20 C -0.195 4.195 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.339 5.715 -6.651 9.075 hybrid contribution 0.046 -0.087 1.139 1.143 sum -2.293 5.628 -5.512 8.204 Atomic orbital electron populations 1.22081 0.99774 0.99221 0.99440 1.21517 0.91411 0.99772 1.01733 1.19261 0.95096 0.90552 0.83858 0.97662 1.21349 0.91290 1.41647 1.00917 0.91636 1.24931 0.97776 0.95249 0.95969 1.69915 1.34661 1.42034 1.06151 0.86697 0.85949 0.78416 0.77227 1.20238 1.21391 1.20240 1.62317 1.00271 1.26285 1.36684 1.22894 0.93063 0.99773 0.99039 1.21587 0.98647 0.89332 0.91367 1.22891 0.98837 0.97702 1.02993 1.21961 0.99308 0.95069 0.90610 1.60757 1.30207 1.35578 1.05194 1.21972 0.99942 0.91589 0.93608 1.22468 0.99284 0.98306 0.99411 0.93521 0.94002 0.95068 0.89706 0.94106 0.92939 0.96996 0.93407 0.90238 0.89018 0.93647 0.88617 0.91081 0.91721 0.85071 0.91145 0.91546 0.91555 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.27 37.16 0.31 -2.64 16 2 C -0.11 -2.50 5.49 -26.73 -0.15 -2.65 16 3 C 0.22 5.28 0.98 -68.86 -0.07 5.22 16 4 H 0.01 0.16 7.45 -51.93 -0.39 -0.23 16 5 C -0.51 -13.35 6.41 -34.44 -0.22 -13.57 16 6 H 0.07 1.70 5.30 -52.49 -0.28 1.42 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -24.74 11.63 55.43 0.64 -24.10 16 9 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.53 -11.16 4.65 -228.14 -1.06 -12.22 16 14 C 0.00 0.01 8.28 60.07 0.50 0.51 16 15 C 0.10 1.91 1.85 -67.59 -0.13 1.78 16 16 C -0.18 -3.45 4.64 -26.64 -0.12 -3.57 16 17 C 0.06 0.98 6.55 -3.83 -0.03 0.96 16 18 N -0.69 -9.99 6.87 -113.81 -0.78 -10.78 16 19 C 0.06 0.83 6.55 -3.84 -0.03 0.81 16 20 C -0.16 -2.44 5.00 -26.65 -0.13 -2.57 16 21 H 0.05 0.85 6.36 -51.93 -0.33 0.52 16 22 H 0.04 0.83 7.39 -51.93 -0.38 0.45 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.08 2.23 6.29 -51.93 -0.33 1.91 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.01 0.22 6.31 -51.93 -0.33 -0.11 16 28 H 0.05 0.79 6.32 -51.93 -0.33 0.46 16 29 H 0.08 1.44 3.60 -51.93 -0.19 1.25 16 30 H 0.09 1.98 5.68 -51.93 -0.29 1.68 16 31 H 0.04 0.84 6.40 -51.93 -0.33 0.51 16 32 H 0.10 2.15 6.04 -51.93 -0.31 1.84 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.33 4.44 8.86 -39.29 -0.35 4.09 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.85 6.25 -51.92 -0.32 0.53 16 LS Contribution 280.87 15.07 4.23 4.23 Total: -1.00 -26.59 280.87 -8.40 -34.99 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.26 Total: 6.18 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -0.16 Total: -14.14 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -1.20 Total: -47.09 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.59 -8.40 -34.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036301729.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.925 kcal (2) G-P(sol) polarization free energy of solvation -26.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds