Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46922 * 2 1 4 4 H 1.09002 * 109.47118 * 52.99561 * 3 2 1 5 5 C 1.50703 * 109.46994 * 172.99277 * 3 2 1 6 6 H 1.08002 * 120.00326 * 115.63771 * 5 3 2 7 7 C 1.37880 * 119.99752 * 295.63194 * 5 3 2 8 8 N 1.31515 * 120.00064 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99896 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47363 * 60.00232 * 9 7 5 11 11 H 1.48500 * 109.47309 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47240 * 300.00097 * 9 7 5 13 13 N 1.46902 * 109.47405 * 292.99063 * 3 2 1 14 14 C 1.46903 * 110.99826 * 81.06594 * 13 3 2 15 15 C 1.46894 * 110.99923 * 205.02263 * 13 3 2 16 16 C 1.53123 * 109.52266 * 302.00551 * 15 13 3 17 17 C 1.53047 * 109.27323 * 182.50886 * 16 15 13 18 18 N 1.46849 * 109.57738 * 59.08260 * 17 16 15 19 19 C 1.46842 * 111.19875 * 298.29032 * 18 17 16 20 20 C 1.53033 * 109.52610 * 61.74082 * 19 18 17 21 21 H 1.09006 * 109.47216 * 79.59120 * 1 2 3 22 22 H 1.09004 * 109.47037 * 319.59235 * 1 2 3 23 23 H 1.09002 * 109.47052 * 199.58892 * 1 2 3 24 24 H 1.08992 * 109.47230 * 119.99753 * 2 1 3 25 25 H 1.09004 * 109.47104 * 240.00342 * 2 1 3 26 26 H 0.96997 * 119.99976 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47048 * 66.52015 * 14 13 3 28 28 H 1.08997 * 109.46801 * 186.51710 * 14 13 3 29 29 H 1.08997 * 109.47241 * 306.51863 * 14 13 3 30 30 H 1.08998 * 109.52968 * 62.13539 * 15 13 3 31 31 H 1.09003 * 109.50236 * 302.38077 * 16 15 13 32 32 H 1.08997 * 109.50418 * 62.50430 * 16 15 13 33 33 H 1.09003 * 109.40877 * 299.06850 * 17 16 15 34 34 H 1.09002 * 109.45223 * 179.13101 * 17 16 15 35 35 H 1.00898 * 110.99917 * 62.39146 * 18 17 16 36 36 H 1.09001 * 109.46220 * 301.72726 * 19 18 17 37 37 H 1.08998 * 109.45388 * 181.75265 * 19 18 17 38 38 H 1.08993 * 109.50645 * 180.87872 * 20 19 18 39 39 H 1.09007 * 109.53633 * 60.77809 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5779 1.9913 0.8207 5 6 3.5370 1.4461 0.1733 6 1 4.1714 1.8174 -0.6179 7 6 4.0967 0.9754 1.3422 8 7 3.3242 0.5228 2.3056 9 14 5.9522 0.9804 1.5574 10 1 6.4590 2.3722 1.4521 11 1 6.2974 0.4271 2.8915 12 1 6.5756 0.1454 0.4994 13 7 1.6932 2.0846 -1.2750 14 6 0.2999 2.5503 -1.2680 15 6 2.6154 3.1873 -1.5770 16 6 2.5781 4.2117 -0.4395 17 6 3.4930 5.3878 -0.7887 18 7 3.0443 6.0046 -2.0436 19 6 3.1175 5.0525 -3.1591 20 6 2.1903 3.8672 -2.8815 21 1 -0.3634 0.1857 -1.0108 22 1 -0.3633 0.7825 0.6662 23 1 -0.3633 -0.9682 0.3446 24 1 1.8933 -0.5137 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.7180 0.1913 3.1277 27 1 0.1897 3.3558 -0.5420 28 1 0.0343 2.9162 -2.2598 29 1 -0.3579 1.7244 -0.9972 30 1 3.6276 2.7972 -1.6828 31 1 1.5579 4.5722 -0.3077 32 1 2.9215 3.7437 0.4831 33 1 4.5156 5.0290 -0.9058 34 1 3.4568 6.1262 0.0123 35 1 2.1126 6.3800 -1.9490 36 1 4.1418 4.6952 -3.2650 37 1 2.8085 5.5475 -4.0797 38 1 2.2566 3.1532 -3.7024 39 1 1.1635 4.2214 -2.7894 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036301729.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = -8.705597 kcal Electronic energy + Delta-G solvation = -17278.839676 eV Core-core repulsion = 14834.611628 eV Total energy + Delta-G solvation = -2444.228048 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.64809 -37.78981 -34.75676 -33.42449 -31.76249 -30.28233 -29.59909 -26.12139 -24.93270 -23.84229 -23.00536 -21.34335 -20.52640 -18.36189 -17.30104 -16.64716 -16.25877 -15.61651 -15.47348 -15.05242 -15.02019 -14.55427 -14.15343 -13.81870 -13.63676 -13.28748 -13.00878 -12.96774 -12.74208 -12.71556 -12.62347 -12.28199 -12.04200 -11.91895 -11.60436 -11.44156 -11.33501 -10.76130 -10.57965 -10.44092 -9.34442 -8.73139 -8.10491 -6.18908 1.40110 1.40968 1.47627 2.41757 3.19166 3.36787 3.54430 3.91204 4.14011 4.29329 4.40327 4.47605 4.50847 4.53286 4.60143 4.65090 4.73936 4.78848 4.80520 4.98249 5.03983 5.08441 5.11372 5.16790 5.22117 5.32514 5.42168 5.45626 5.57683 5.71611 5.75724 5.89710 6.11114 6.27479 6.45228 6.54109 6.85405 6.98719 7.49144 8.96195 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.012128 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.809361 B = 2308.197681 C = 3273.486053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C 0.228 3.772 4 H -0.031 1.031 5 C -0.518 4.518 6 H 0.062 0.938 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.539 5.539 14 C 0.003 3.997 15 C 0.097 3.903 16 C -0.172 4.172 17 C 0.069 3.931 18 N -0.682 5.682 19 C 0.062 3.938 20 C -0.143 4.143 21 H 0.067 0.933 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.259 0.741 27 H 0.006 0.994 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.344 0.656 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 7.019 -8.097 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.142 4.142 3 C 0.121 3.879 4 H -0.014 1.014 5 C -0.556 4.556 6 H 0.080 0.920 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.262 5.262 14 C -0.145 4.145 15 C -0.011 4.011 16 C -0.213 4.213 17 C -0.061 4.061 18 N -0.311 5.311 19 C -0.068 4.068 20 C -0.182 4.182 21 H 0.086 0.914 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.025 0.975 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.162 0.838 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.775 6.869 -8.429 11.222 hybrid contribution 0.152 -0.424 1.654 1.714 sum -2.624 6.446 -6.775 9.713 Atomic orbital electron populations 1.21933 0.96658 1.00001 1.00677 1.21381 0.94251 0.98874 0.99736 1.18990 0.93848 0.90739 0.84291 1.01384 1.21617 0.92545 1.40718 1.00711 0.91973 1.25610 1.01525 0.95257 0.95898 1.70043 1.36101 1.43153 1.06481 0.85806 0.81510 0.78528 0.77025 1.19644 1.21324 1.19882 1.62273 1.02038 1.27545 1.34338 1.22927 0.91371 0.99760 1.00430 1.21579 0.97005 0.89037 0.93520 1.22720 0.99375 0.98378 1.00828 1.21831 0.98006 0.94280 0.92029 1.60742 1.31023 1.35089 1.04198 1.22023 0.99286 0.90969 0.94485 1.22374 1.00160 0.98698 0.97006 0.91444 0.94508 0.93525 0.92887 0.94780 0.93212 0.97544 0.90702 0.89936 0.91907 0.93328 0.93077 0.92247 0.90650 0.83822 0.91801 0.88500 0.91178 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.27 71.98 0.60 -4.68 16 2 C -0.10 -4.98 5.49 30.59 0.17 -4.82 16 3 C 0.23 11.32 0.98 44.17 0.04 11.37 16 4 H -0.03 -1.77 7.45 -2.39 -0.02 -1.79 16 5 C -0.52 -27.70 6.41 25.60 0.16 -27.53 16 6 H 0.06 3.32 5.30 -2.91 -0.02 3.30 16 7 C 0.02 0.88 5.29 84.66 0.45 1.32 16 8 N -0.92 -52.81 11.63 21.45 0.25 -52.56 16 9 Si 0.94 43.62 29.54 68.60 2.03 45.65 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 13 N -0.54 -22.37 4.65 -875.70 -4.07 -26.45 16 14 C 0.00 0.10 8.28 127.69 1.06 1.16 16 15 C 0.10 3.68 1.85 45.00 0.08 3.77 16 16 C -0.17 -6.47 4.64 30.65 0.14 -6.33 16 17 C 0.07 2.17 6.55 86.33 0.57 2.74 16 18 N -0.68 -17.88 6.87 -514.00 -3.53 -21.41 16 19 C 0.06 1.56 6.55 86.33 0.57 2.13 16 20 C -0.14 -4.11 5.00 30.65 0.15 -3.96 16 21 H 0.07 2.33 6.36 -2.38 -0.02 2.32 16 22 H 0.04 1.44 7.39 -2.39 -0.02 1.43 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 2.88 6.29 -2.39 -0.02 2.86 16 25 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.26 14.34 8.31 -92.71 -0.77 13.56 16 27 H 0.01 0.22 6.31 -2.39 -0.02 0.21 16 28 H 0.07 2.22 6.32 -2.39 -0.02 2.21 16 29 H 0.08 2.83 3.60 -2.39 -0.01 2.83 16 30 H 0.06 2.74 5.68 -2.39 -0.01 2.73 16 31 H 0.05 1.76 6.40 -2.39 -0.02 1.75 16 32 H 0.05 2.38 6.04 -2.39 -0.01 2.36 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.34 8.00 8.86 -89.70 -0.79 7.20 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 1.79 6.25 -2.38 -0.01 1.78 16 Total: -1.00 -58.38 280.87 -1.10 -59.48 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.24 Total: 20.12 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 3.99 Total: -24.83 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -7.35 Total: -100.42 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -58.38 -1.10 -59.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036301729.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.777 kcal (2) G-P(sol) polarization free energy of solvation -58.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds