Wall clock time and date at job start Mon Mar 30 2020 03:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46588 * 2 1 4 4 N 1.46905 * 109.47123 * 180.02562 * 3 2 1 5 5 C 1.46951 * 111.00351 * 190.00111 * 4 3 2 6 6 C 1.53051 * 109.36537 * 183.18563 * 5 4 3 7 7 N 1.46951 * 109.36439 * 301.59511 * 6 5 4 8 8 C 1.46904 * 111.00033 * 183.18940 * 7 6 5 9 9 H 1.08998 * 109.47046 * 54.99737 * 8 7 6 10 10 C 1.53006 * 109.46700 * 295.00057 * 8 7 6 11 11 C 1.50697 * 109.46891 * 175.00236 * 8 7 6 12 12 H 1.07991 * 120.00449 * 359.72239 * 11 8 7 13 13 C 1.37885 * 119.99686 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 8 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 C 1.46964 * 110.87893 * 59.32191 * 7 6 5 20 20 C 1.46960 * 110.99438 * 313.80010 * 4 3 2 21 21 H 1.09001 * 109.47182 * 60.00586 * 1 2 3 22 22 H 1.09008 * 109.46828 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47064 * 299.99794 * 1 2 3 24 24 H 1.08999 * 109.47064 * 240.00206 * 2 1 3 25 25 H 1.09001 * 109.47182 * 119.99414 * 2 1 3 26 26 H 1.08995 * 109.47680 * 60.00083 * 3 2 1 27 27 H 1.09001 * 109.46880 * 299.99598 * 3 2 1 28 28 H 1.08994 * 109.48852 * 63.21251 * 5 4 3 29 29 H 1.09007 * 109.48569 * 303.15287 * 5 4 3 30 30 H 1.09002 * 109.48528 * 181.62493 * 6 5 4 31 31 H 1.09002 * 109.50436 * 61.57577 * 6 5 4 32 32 H 1.08998 * 109.47109 * 299.99641 * 10 8 7 33 33 H 1.08994 * 109.47204 * 59.99998 * 10 8 7 34 34 H 1.09006 * 109.46531 * 179.97438 * 10 8 7 35 35 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.48393 * 60.64792 * 19 7 6 37 37 H 1.08999 * 109.48636 * 180.70795 * 19 7 6 38 38 H 1.09001 * 109.48841 * 296.77349 * 20 4 3 39 39 H 1.08997 * 109.49350 * 56.84684 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 -0.0006 5 6 4.0356 2.7938 0.2376 6 6 5.5634 2.7655 0.1505 7 7 6.0904 1.8159 1.1404 8 6 7.5595 1.8160 1.1398 9 1 7.9228 2.8316 1.2970 10 6 8.0689 1.2945 -0.2054 11 6 8.0622 0.9256 2.2468 12 1 7.3607 0.4147 2.8896 13 6 9.4179 0.7682 2.4430 14 7 10.2722 1.3908 1.6605 15 14 10.0411 -0.3294 3.8200 16 1 9.5455 -1.7138 3.6124 17 1 11.5262 -0.3293 3.8194 18 1 9.5472 0.1829 5.1234 19 6 5.5637 0.4648 0.9022 20 6 4.0360 0.4930 0.9893 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6765 1.9563 -0.8900 28 1 3.7340 3.1320 1.2289 29 1 3.6409 3.4759 -0.5155 30 1 5.9577 3.7609 0.3554 31 1 5.8652 2.4536 -0.8494 32 1 7.7056 0.2789 -0.3625 33 1 7.7052 1.9384 -1.0060 34 1 9.1590 1.2950 -0.2059 35 1 11.2259 1.2797 1.7983 36 1 5.8653 0.1265 -0.0892 37 1 5.9585 -0.2173 1.6552 38 1 3.7345 0.8052 1.9892 39 1 3.6417 -0.5023 0.7843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042319821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:37 Heat of formation + Delta-G solvation = 5.486341 kcal Electronic energy + Delta-G solvation = -16540.599951 eV Core-core repulsion = 14096.987312 eV Total energy + Delta-G solvation = -2443.612639 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.96424 -36.21225 -33.50960 -32.07816 -30.34729 -29.06907 -26.27155 -25.24208 -23.79437 -23.14269 -20.99119 -20.25670 -18.58932 -16.16824 -15.87091 -15.25940 -14.69831 -14.53285 -14.19721 -13.84491 -13.51216 -13.34148 -12.73907 -12.49208 -12.10950 -12.00089 -11.59272 -11.27646 -11.19066 -11.02999 -10.81166 -10.72421 -10.62397 -10.45577 -10.30288 -10.13004 -9.89683 -9.54233 -8.81824 -8.35263 -8.01954 -7.06799 -5.97786 -4.01689 3.34272 3.38476 3.41340 4.17849 4.43738 4.90217 4.98486 5.06730 5.26624 5.33971 5.44446 5.54654 5.61103 5.65472 5.72085 5.87320 5.92666 5.93216 5.99477 6.16593 6.16858 6.22468 6.32574 6.52073 6.69263 6.72632 6.89120 6.93504 7.19544 7.35497 7.37610 7.58504 7.77828 7.87301 8.17602 8.44078 8.65187 9.03928 9.63203 11.09202 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.042127 B = 0.006310 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.503827 B = 4436.542574 C = 4853.348512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.056 3.944 4 N -0.541 5.541 5 C 0.061 3.939 6 C 0.054 3.946 7 N -0.534 5.534 8 C 0.211 3.789 9 H 0.038 0.962 10 C -0.170 4.170 11 C -0.500 4.500 12 H 0.061 0.939 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.064 3.936 20 C 0.052 3.948 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.029 0.971 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.008 0.992 34 H 0.087 0.913 35 H 0.260 0.740 36 H 0.034 0.966 37 H 0.085 0.915 38 H 0.035 0.965 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 -0.741 -3.477 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.072 4.072 4 N -0.266 5.266 5 C -0.067 4.067 6 C -0.075 4.075 7 N -0.258 5.258 8 C 0.105 3.895 9 H 0.056 0.944 10 C -0.229 4.229 11 C -0.539 4.539 12 H 0.079 0.921 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.064 4.064 20 C -0.076 4.076 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.027 0.973 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.103 0.897 38 H 0.053 0.947 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.096 -0.705 -3.490 14.539 hybrid contribution 0.443 -0.516 0.669 0.954 sum -13.653 -1.221 -2.821 13.995 Atomic orbital electron populations 1.21735 0.95874 1.01524 1.01601 1.21686 0.95317 0.96865 1.02794 1.22128 0.88105 0.96759 1.00211 1.62250 1.06367 1.07888 1.50058 1.22150 0.95989 0.89343 0.99209 1.22054 0.92646 0.97525 0.95230 1.62506 1.11461 1.05610 1.46245 1.19277 0.80037 0.97275 0.92927 0.94414 1.22377 1.05024 0.97926 0.97615 1.21075 0.91246 1.27443 1.14096 0.92109 1.24926 0.96856 0.96083 0.96380 1.69881 1.02057 1.43167 1.38266 0.86594 0.77455 0.80963 0.82563 1.20372 1.21409 1.20297 1.22018 0.91408 0.92609 1.00384 1.22364 0.96470 0.95732 0.92990 0.92804 0.92718 0.92957 0.91205 0.91532 0.95313 0.91272 0.94554 0.91469 0.91339 0.94658 0.95157 0.97289 0.89474 0.92992 0.94809 0.89718 0.94705 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.43 5.20 -26.73 -0.14 -1.57 16 3 C 0.06 0.71 5.28 -3.82 -0.02 0.69 16 4 N -0.54 -8.52 4.86 -234.46 -1.14 -9.65 16 5 C 0.06 0.99 5.58 -3.77 -0.02 0.97 16 6 C 0.05 1.04 5.25 -3.77 -0.02 1.02 16 7 N -0.53 -11.79 4.69 -227.87 -1.07 -12.86 16 8 C 0.21 5.39 2.35 -68.86 -0.16 5.23 16 9 H 0.04 1.06 8.11 -51.93 -0.42 0.64 16 10 C -0.17 -4.21 8.27 37.16 0.31 -3.91 16 11 C -0.50 -13.75 7.89 -34.44 -0.27 -14.02 16 12 H 0.06 1.67 6.78 -52.49 -0.36 1.31 16 13 C 0.06 1.62 5.31 -17.82 -0.09 1.52 16 14 N -0.89 -25.62 11.31 55.43 0.63 -25.00 16 15 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 C 0.06 1.31 4.86 -3.76 -0.02 1.29 16 20 C 0.05 0.87 4.93 -3.76 -0.02 0.86 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.77 6.26 -51.93 -0.33 0.44 16 26 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 31 H 0.04 0.70 6.60 -51.93 -0.34 0.36 16 32 H 0.03 0.73 6.46 -51.93 -0.34 0.39 16 33 H 0.01 0.19 6.59 -51.93 -0.34 -0.15 16 34 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.03 0.72 6.46 -51.93 -0.34 0.38 16 37 H 0.08 1.83 6.45 -51.93 -0.34 1.50 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.10 5.99 -51.93 -0.31 0.78 16 LS Contribution 291.96 15.07 4.40 4.40 Total: -1.00 -28.28 291.96 -9.07 -37.35 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.78 Total: -1.75 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -0.09 Total: -8.89 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -1.58 Total: -47.51 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.28 -9.07 -37.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042319821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.838 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds