Wall clock time and date at job start Mon Mar 30 2020 03:23:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53003 * 109.46588 * 2 1
4 4 N 1.46905 * 109.47123 * 180.02562 * 3 2 1
5 5 C 1.46951 * 111.00351 * 190.00111 * 4 3 2
6 6 C 1.53051 * 109.36537 * 183.18563 * 5 4 3
7 7 N 1.46951 * 109.36439 * 301.59511 * 6 5 4
8 8 C 1.46904 * 111.00033 * 183.18940 * 7 6 5
9 9 H 1.08998 * 109.47046 * 54.99737 * 8 7 6
10 10 C 1.53006 * 109.46700 * 295.00057 * 8 7 6
11 11 C 1.50697 * 109.46891 * 175.00236 * 8 7 6
12 12 H 1.07991 * 120.00449 * 359.72239 * 11 8 7
13 13 C 1.37885 * 119.99686 * 180.02562 * 11 8 7
14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 8
15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 8
16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11
17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11
18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11
19 19 C 1.46964 * 110.87893 * 59.32191 * 7 6 5
20 20 C 1.46960 * 110.99438 * 313.80010 * 4 3 2
21 21 H 1.09001 * 109.47182 * 60.00586 * 1 2 3
22 22 H 1.09008 * 109.46828 * 180.02562 * 1 2 3
23 23 H 1.08999 * 109.47064 * 299.99794 * 1 2 3
24 24 H 1.08999 * 109.47064 * 240.00206 * 2 1 3
25 25 H 1.09001 * 109.47182 * 119.99414 * 2 1 3
26 26 H 1.08995 * 109.47680 * 60.00083 * 3 2 1
27 27 H 1.09001 * 109.46880 * 299.99598 * 3 2 1
28 28 H 1.08994 * 109.48852 * 63.21251 * 5 4 3
29 29 H 1.09007 * 109.48569 * 303.15287 * 5 4 3
30 30 H 1.09002 * 109.48528 * 181.62493 * 6 5 4
31 31 H 1.09002 * 109.50436 * 61.57577 * 6 5 4
32 32 H 1.08998 * 109.47109 * 299.99641 * 10 8 7
33 33 H 1.08994 * 109.47204 * 59.99998 * 10 8 7
34 34 H 1.09006 * 109.46531 * 179.97438 * 10 8 7
35 35 H 0.97000 * 119.99651 * 180.02562 * 14 13 11
36 36 H 1.09000 * 109.48393 * 60.64792 * 19 7 6
37 37 H 1.08999 * 109.48636 * 180.70795 * 19 7 6
38 38 H 1.09001 * 109.48841 * 296.77349 * 20 4 3
39 39 H 1.08997 * 109.49350 * 56.84684 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 7 3.5089 1.4427 -0.0006
5 6 4.0356 2.7938 0.2376
6 6 5.5634 2.7655 0.1505
7 7 6.0904 1.8159 1.1404
8 6 7.5595 1.8160 1.1398
9 1 7.9228 2.8316 1.2970
10 6 8.0689 1.2945 -0.2054
11 6 8.0622 0.9256 2.2468
12 1 7.3607 0.4147 2.8896
13 6 9.4179 0.7682 2.4430
14 7 10.2722 1.3908 1.6605
15 14 10.0411 -0.3294 3.8200
16 1 9.5455 -1.7138 3.6124
17 1 11.5262 -0.3293 3.8194
18 1 9.5472 0.1829 5.1234
19 6 5.5637 0.4648 0.9022
20 6 4.0360 0.4930 0.9893
21 1 -0.3633 0.5137 -0.8900
22 1 -0.3633 -1.0278 0.0005
23 1 -0.3633 0.5138 0.8900
24 1 1.8933 -0.5138 -0.8900
25 1 1.8934 -0.5137 0.8900
26 1 1.6766 1.9564 0.8899
27 1 1.6765 1.9563 -0.8900
28 1 3.7340 3.1320 1.2289
29 1 3.6409 3.4759 -0.5155
30 1 5.9577 3.7609 0.3554
31 1 5.8652 2.4536 -0.8494
32 1 7.7056 0.2789 -0.3625
33 1 7.7052 1.9384 -1.0060
34 1 9.1590 1.2950 -0.2059
35 1 11.2259 1.2797 1.7983
36 1 5.8653 0.1265 -0.0892
37 1 5.9585 -0.2173 1.6552
38 1 3.7345 0.8052 1.9892
39 1 3.6417 -0.5023 0.7843
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000042319821.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:37
Heat of formation + Delta-G solvation = 5.486341 kcal
Electronic energy + Delta-G solvation = -16540.599951 eV
Core-core repulsion = 14096.987312 eV
Total energy + Delta-G solvation = -2443.612639 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-38.96424 -36.21225 -33.50960 -32.07816 -30.34729 -29.06907 -26.27155 -25.24208
-23.79437 -23.14269 -20.99119 -20.25670 -18.58932 -16.16824 -15.87091 -15.25940
-14.69831 -14.53285 -14.19721 -13.84491 -13.51216 -13.34148 -12.73907 -12.49208
-12.10950 -12.00089 -11.59272 -11.27646 -11.19066 -11.02999 -10.81166 -10.72421
-10.62397 -10.45577 -10.30288 -10.13004 -9.89683 -9.54233 -8.81824 -8.35263
-8.01954 -7.06799 -5.97786 -4.01689 3.34272 3.38476 3.41340 4.17849
4.43738 4.90217 4.98486 5.06730 5.26624 5.33971 5.44446 5.54654
5.61103 5.65472 5.72085 5.87320 5.92666 5.93216 5.99477 6.16593
6.16858 6.22468 6.32574 6.52073 6.69263 6.72632 6.89120 6.93504
7.19544 7.35497 7.37610 7.58504 7.77828 7.87301 8.17602 8.44078
8.65187 9.03928 9.63203 11.09202
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.042127 B = 0.006310 C = 0.005768
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 664.503827 B = 4436.542574 C = 4853.348512
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.129 4.129
3 C 0.056 3.944
4 N -0.541 5.541
5 C 0.061 3.939
6 C 0.054 3.946
7 N -0.534 5.534
8 C 0.211 3.789
9 H 0.038 0.962
10 C -0.170 4.170
11 C -0.500 4.500
12 H 0.061 0.939
13 C 0.059 3.941
14 N -0.894 5.894
15 Si 0.896 3.104
16 H -0.278 1.278
17 H -0.288 1.288
18 H -0.277 1.277
19 C 0.064 3.936
20 C 0.052 3.948
21 H 0.053 0.947
22 H 0.054 0.946
23 H 0.051 0.949
24 H 0.069 0.931
25 H 0.066 0.934
26 H 0.029 0.971
27 H 0.069 0.931
28 H 0.036 0.964
29 H 0.067 0.933
30 H 0.068 0.932
31 H 0.035 0.965
32 H 0.029 0.971
33 H 0.008 0.992
34 H 0.087 0.913
35 H 0.260 0.740
36 H 0.034 0.966
37 H 0.085 0.915
38 H 0.035 0.965
39 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.309 -0.741 -3.477 14.744
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.167 4.167
3 C -0.072 4.072
4 N -0.266 5.266
5 C -0.067 4.067
6 C -0.075 4.075
7 N -0.258 5.258
8 C 0.105 3.895
9 H 0.056 0.944
10 C -0.229 4.229
11 C -0.539 4.539
12 H 0.079 0.921
13 C -0.142 4.142
14 N -0.534 5.534
15 Si 0.724 3.276
16 H -0.204 1.204
17 H -0.214 1.214
18 H -0.203 1.203
19 C -0.064 4.064
20 C -0.076 4.076
21 H 0.072 0.928
22 H 0.073 0.927
23 H 0.070 0.930
24 H 0.088 0.912
25 H 0.085 0.915
26 H 0.047 0.953
27 H 0.087 0.913
28 H 0.054 0.946
29 H 0.085 0.915
30 H 0.087 0.913
31 H 0.053 0.947
32 H 0.048 0.952
33 H 0.027 0.973
34 H 0.105 0.895
35 H 0.070 0.930
36 H 0.052 0.948
37 H 0.103 0.897
38 H 0.053 0.947
39 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -14.096 -0.705 -3.490 14.539
hybrid contribution 0.443 -0.516 0.669 0.954
sum -13.653 -1.221 -2.821 13.995
Atomic orbital electron populations
1.21735 0.95874 1.01524 1.01601 1.21686 0.95317 0.96865 1.02794
1.22128 0.88105 0.96759 1.00211 1.62250 1.06367 1.07888 1.50058
1.22150 0.95989 0.89343 0.99209 1.22054 0.92646 0.97525 0.95230
1.62506 1.11461 1.05610 1.46245 1.19277 0.80037 0.97275 0.92927
0.94414 1.22377 1.05024 0.97926 0.97615 1.21075 0.91246 1.27443
1.14096 0.92109 1.24926 0.96856 0.96083 0.96380 1.69881 1.02057
1.43167 1.38266 0.86594 0.77455 0.80963 0.82563 1.20372 1.21409
1.20297 1.22018 0.91408 0.92609 1.00384 1.22364 0.96470 0.95732
0.92990 0.92804 0.92718 0.92957 0.91205 0.91532 0.95313 0.91272
0.94554 0.91469 0.91339 0.94658 0.95157 0.97289 0.89474 0.92992
0.94809 0.89718 0.94705 0.90816
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16
2 C -0.13 -1.43 5.20 -26.73 -0.14 -1.57 16
3 C 0.06 0.71 5.28 -3.82 -0.02 0.69 16
4 N -0.54 -8.52 4.86 -234.46 -1.14 -9.65 16
5 C 0.06 0.99 5.58 -3.77 -0.02 0.97 16
6 C 0.05 1.04 5.25 -3.77 -0.02 1.02 16
7 N -0.53 -11.79 4.69 -227.87 -1.07 -12.86 16
8 C 0.21 5.39 2.35 -68.86 -0.16 5.23 16
9 H 0.04 1.06 8.11 -51.93 -0.42 0.64 16
10 C -0.17 -4.21 8.27 37.16 0.31 -3.91 16
11 C -0.50 -13.75 7.89 -34.44 -0.27 -14.02 16
12 H 0.06 1.67 6.78 -52.49 -0.36 1.31 16
13 C 0.06 1.62 5.31 -17.82 -0.09 1.52 16
14 N -0.89 -25.62 11.31 55.43 0.63 -25.00 16
15 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16
16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16
19 C 0.06 1.31 4.86 -3.76 -0.02 1.29 16
20 C 0.05 0.87 4.93 -3.76 -0.02 0.86 16
21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
22 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16
23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
25 H 0.07 0.77 6.26 -51.93 -0.33 0.44 16
26 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16
27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16
30 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16
31 H 0.04 0.70 6.60 -51.93 -0.34 0.36 16
32 H 0.03 0.73 6.46 -51.93 -0.34 0.39 16
33 H 0.01 0.19 6.59 -51.93 -0.34 -0.15 16
34 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16
35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
36 H 0.03 0.72 6.46 -51.93 -0.34 0.38 16
37 H 0.08 1.83 6.45 -51.93 -0.34 1.50 16
38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
39 H 0.07 1.10 5.99 -51.93 -0.31 0.78 16
LS Contribution 291.96 15.07 4.40 4.40
Total: -1.00 -28.28 291.96 -9.07 -37.35
By element:
Atomic # 1 Polarization: 5.03 SS G_CDS: -6.78 Total: -1.75 kcal
Atomic # 6 Polarization: -8.81 SS G_CDS: -0.09 Total: -8.89 kcal
Atomic # 7 Polarization: -45.93 SS G_CDS: -1.58 Total: -47.51 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal
Total LS contribution 4.40 Total: 4.40 kcal
Total: -28.28 -9.07 -37.35 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042319821.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.838 kcal
(2) G-P(sol) polarization free energy of solvation -28.283 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.555 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.486 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds