Wall clock time and date at job start Mon Mar 30 2020 03:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46588 * 2 1 4 4 N 1.46905 * 109.47123 * 180.02562 * 3 2 1 5 5 C 1.46951 * 111.00351 * 190.00111 * 4 3 2 6 6 C 1.53051 * 109.36537 * 183.18563 * 5 4 3 7 7 N 1.46951 * 109.36439 * 301.59511 * 6 5 4 8 8 C 1.46904 * 111.00033 * 183.18940 * 7 6 5 9 9 H 1.08998 * 109.47046 * 54.99737 * 8 7 6 10 10 C 1.53006 * 109.46700 * 295.00057 * 8 7 6 11 11 C 1.50697 * 109.46891 * 175.00236 * 8 7 6 12 12 H 1.07991 * 120.00449 * 359.72239 * 11 8 7 13 13 C 1.37885 * 119.99686 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 8 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 C 1.46964 * 110.87893 * 59.32191 * 7 6 5 20 20 C 1.46960 * 110.99438 * 313.80010 * 4 3 2 21 21 H 1.09001 * 109.47182 * 60.00586 * 1 2 3 22 22 H 1.09008 * 109.46828 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47064 * 299.99794 * 1 2 3 24 24 H 1.08999 * 109.47064 * 240.00206 * 2 1 3 25 25 H 1.09001 * 109.47182 * 119.99414 * 2 1 3 26 26 H 1.08995 * 109.47680 * 60.00083 * 3 2 1 27 27 H 1.09001 * 109.46880 * 299.99598 * 3 2 1 28 28 H 1.08994 * 109.48852 * 63.21251 * 5 4 3 29 29 H 1.09007 * 109.48569 * 303.15287 * 5 4 3 30 30 H 1.09002 * 109.48528 * 181.62493 * 6 5 4 31 31 H 1.09002 * 109.50436 * 61.57577 * 6 5 4 32 32 H 1.08998 * 109.47109 * 299.99641 * 10 8 7 33 33 H 1.08994 * 109.47204 * 59.99998 * 10 8 7 34 34 H 1.09006 * 109.46531 * 179.97438 * 10 8 7 35 35 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.48393 * 60.64792 * 19 7 6 37 37 H 1.08999 * 109.48636 * 180.70795 * 19 7 6 38 38 H 1.09001 * 109.48841 * 296.77349 * 20 4 3 39 39 H 1.08997 * 109.49350 * 56.84684 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 -0.0006 5 6 4.0356 2.7938 0.2376 6 6 5.5634 2.7655 0.1505 7 7 6.0904 1.8159 1.1404 8 6 7.5595 1.8160 1.1398 9 1 7.9228 2.8316 1.2970 10 6 8.0689 1.2945 -0.2054 11 6 8.0622 0.9256 2.2468 12 1 7.3607 0.4147 2.8896 13 6 9.4179 0.7682 2.4430 14 7 10.2722 1.3908 1.6605 15 14 10.0411 -0.3294 3.8200 16 1 9.5455 -1.7138 3.6124 17 1 11.5262 -0.3293 3.8194 18 1 9.5472 0.1829 5.1234 19 6 5.5637 0.4648 0.9022 20 6 4.0360 0.4930 0.9893 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6765 1.9563 -0.8900 28 1 3.7340 3.1320 1.2289 29 1 3.6409 3.4759 -0.5155 30 1 5.9577 3.7609 0.3554 31 1 5.8652 2.4536 -0.8494 32 1 7.7056 0.2789 -0.3625 33 1 7.7052 1.9384 -1.0060 34 1 9.1590 1.2950 -0.2059 35 1 11.2259 1.2797 1.7983 36 1 5.8653 0.1265 -0.0892 37 1 5.9585 -0.2173 1.6552 38 1 3.7345 0.8052 1.9892 39 1 3.6417 -0.5023 0.7843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042319821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:37 Heat of formation + Delta-G solvation = -13.479300 kcal Electronic energy + Delta-G solvation = -16541.422363 eV Core-core repulsion = 14096.987312 eV Total energy + Delta-G solvation = -2444.435051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.42453 -37.71126 -35.06364 -33.63287 -31.80153 -30.79429 -27.66259 -27.30244 -25.05860 -24.61516 -22.50071 -21.54363 -20.19029 -18.21137 -17.38866 -16.47618 -16.28664 -15.80651 -15.80009 -15.45978 -15.00414 -14.67876 -14.40964 -13.74793 -13.66592 -13.25904 -13.05355 -12.91245 -12.64005 -12.51604 -12.37359 -12.35237 -12.19628 -12.01552 -11.89602 -11.64344 -11.44793 -11.15475 -10.85614 -10.48242 -9.26586 -8.84744 -8.10089 -6.21423 1.43312 1.45014 1.52576 2.43509 2.98496 3.18776 3.38213 3.95209 4.05547 4.14738 4.24662 4.42631 4.46951 4.48803 4.50786 4.68149 4.72776 4.73621 4.84083 4.86673 4.89892 4.96332 5.04032 5.07219 5.15376 5.22068 5.24608 5.33409 5.43090 5.52960 5.70353 5.78995 6.09253 6.18767 6.21535 6.49990 6.75195 6.91615 7.47770 8.96021 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.042127 B = 0.006310 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.503827 B = 4436.542574 C = 4853.348512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.057 3.943 4 N -0.550 5.550 5 C 0.069 3.931 6 C 0.054 3.946 7 N -0.543 5.543 8 C 0.215 3.785 9 H 0.005 0.995 10 C -0.154 4.154 11 C -0.516 4.516 12 H 0.056 0.944 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.960 3.040 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.068 3.932 20 C 0.064 3.936 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.032 0.968 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.061 0.939 35 H 0.261 0.739 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.030 0.970 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.129 -1.277 -3.446 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.070 4.070 4 N -0.275 5.275 5 C -0.059 4.059 6 C -0.075 4.075 7 N -0.268 5.268 8 C 0.108 3.892 9 H 0.023 0.977 10 C -0.213 4.213 11 C -0.554 4.554 12 H 0.074 0.926 13 C -0.187 4.187 14 N -0.561 5.561 15 Si 0.786 3.214 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.060 4.060 20 C -0.064 4.064 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.945 -1.240 -3.465 16.364 hybrid contribution 0.980 -0.311 0.619 1.200 sum -14.966 -1.551 -2.845 15.313 Atomic orbital electron populations 1.21696 0.94094 1.02326 1.02150 1.21660 0.96840 0.95643 1.02282 1.22222 0.85753 0.98056 1.00984 1.62249 1.08530 1.07285 1.49450 1.22080 0.93486 0.90292 1.00045 1.22126 0.95027 0.96552 0.93803 1.62419 1.09341 1.07188 1.47812 1.19045 0.82443 0.94970 0.92788 0.97719 1.22157 1.03133 0.98098 0.97906 1.21325 0.91598 1.27802 1.14688 0.92580 1.25707 0.97024 0.97357 0.98624 1.70012 1.02233 1.44232 1.39619 0.85580 0.76893 0.79334 0.79616 1.19566 1.20981 1.19856 1.21973 0.94022 0.91145 0.98895 1.22213 0.93636 0.97357 0.93172 0.92023 0.91854 0.92645 0.91630 0.92113 0.94979 0.89909 0.94824 0.88731 0.91481 0.95501 0.95260 0.95852 0.92002 0.92966 0.95977 0.91636 0.95204 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.13 -2.46 5.20 30.60 0.16 -2.31 16 3 C 0.06 1.27 5.28 86.30 0.46 1.73 16 4 N -0.55 -16.12 4.86 -895.71 -4.35 -20.47 16 5 C 0.07 2.09 5.58 86.31 0.48 2.57 16 6 C 0.05 2.02 5.25 86.31 0.45 2.47 16 7 N -0.54 -24.19 4.69 -874.85 -4.10 -28.29 16 8 C 0.21 11.25 2.35 44.17 0.10 11.36 16 9 H 0.00 0.29 8.11 -2.39 -0.02 0.27 16 10 C -0.15 -7.76 8.27 71.98 0.60 -7.17 16 11 C -0.52 -28.85 7.89 25.60 0.20 -28.65 16 12 H 0.06 3.12 6.78 -2.92 -0.02 3.10 16 13 C 0.01 0.63 5.31 84.66 0.45 1.08 16 14 N -0.92 -53.68 11.31 21.45 0.24 -53.44 16 15 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 C 0.07 2.76 4.86 86.31 0.42 3.18 16 20 C 0.06 2.06 4.93 86.31 0.43 2.48 16 21 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 23 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.25 6.26 -2.39 -0.01 1.23 16 26 H 0.03 0.71 8.08 -2.39 -0.02 0.69 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 31 H 0.03 1.06 6.60 -2.39 -0.02 1.04 16 32 H 0.03 1.43 6.46 -2.39 -0.02 1.42 16 33 H 0.02 1.06 6.59 -2.39 -0.02 1.04 16 34 H 0.06 3.44 6.06 -2.38 -0.01 3.43 16 35 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.02 0.94 6.46 -2.39 -0.02 0.92 16 37 H 0.07 2.87 6.45 -2.39 -0.02 2.85 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 2.63 5.99 -2.39 -0.01 2.62 16 Total: -1.00 -60.47 291.96 -0.73 -61.20 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.00 Total: 9.58 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.46 Total: -14.70 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -8.21 Total: -102.19 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -60.47 -0.73 -61.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042319821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.723 kcal (2) G-P(sol) polarization free energy of solvation -60.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds