Wall clock time and date at job start Mon Mar 30 2020 03:23:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53003 * 109.46588 * 2 1
4 4 N 1.46905 * 109.47123 * 180.02562 * 3 2 1
5 5 C 1.46951 * 111.00351 * 190.00111 * 4 3 2
6 6 C 1.53051 * 109.36537 * 183.18563 * 5 4 3
7 7 N 1.46951 * 109.36439 * 301.59511 * 6 5 4
8 8 C 1.46904 * 111.00033 * 183.18940 * 7 6 5
9 9 H 1.08998 * 109.47046 * 54.99737 * 8 7 6
10 10 C 1.53006 * 109.46700 * 295.00057 * 8 7 6
11 11 C 1.50697 * 109.46891 * 175.00236 * 8 7 6
12 12 H 1.07991 * 120.00449 * 359.72239 * 11 8 7
13 13 C 1.37885 * 119.99686 * 180.02562 * 11 8 7
14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 8
15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 8
16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11
17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11
18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11
19 19 C 1.46964 * 110.87893 * 59.32191 * 7 6 5
20 20 C 1.46960 * 110.99438 * 313.80010 * 4 3 2
21 21 H 1.09001 * 109.47182 * 60.00586 * 1 2 3
22 22 H 1.09008 * 109.46828 * 180.02562 * 1 2 3
23 23 H 1.08999 * 109.47064 * 299.99794 * 1 2 3
24 24 H 1.08999 * 109.47064 * 240.00206 * 2 1 3
25 25 H 1.09001 * 109.47182 * 119.99414 * 2 1 3
26 26 H 1.08995 * 109.47680 * 60.00083 * 3 2 1
27 27 H 1.09001 * 109.46880 * 299.99598 * 3 2 1
28 28 H 1.08994 * 109.48852 * 63.21251 * 5 4 3
29 29 H 1.09007 * 109.48569 * 303.15287 * 5 4 3
30 30 H 1.09002 * 109.48528 * 181.62493 * 6 5 4
31 31 H 1.09002 * 109.50436 * 61.57577 * 6 5 4
32 32 H 1.08998 * 109.47109 * 299.99641 * 10 8 7
33 33 H 1.08994 * 109.47204 * 59.99998 * 10 8 7
34 34 H 1.09006 * 109.46531 * 179.97438 * 10 8 7
35 35 H 0.97000 * 119.99651 * 180.02562 * 14 13 11
36 36 H 1.09000 * 109.48393 * 60.64792 * 19 7 6
37 37 H 1.08999 * 109.48636 * 180.70795 * 19 7 6
38 38 H 1.09001 * 109.48841 * 296.77349 * 20 4 3
39 39 H 1.08997 * 109.49350 * 56.84684 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 7 3.5089 1.4427 -0.0006
5 6 4.0356 2.7938 0.2376
6 6 5.5634 2.7655 0.1505
7 7 6.0904 1.8159 1.1404
8 6 7.5595 1.8160 1.1398
9 1 7.9228 2.8316 1.2970
10 6 8.0689 1.2945 -0.2054
11 6 8.0622 0.9256 2.2468
12 1 7.3607 0.4147 2.8896
13 6 9.4179 0.7682 2.4430
14 7 10.2722 1.3908 1.6605
15 14 10.0411 -0.3294 3.8200
16 1 9.5455 -1.7138 3.6124
17 1 11.5262 -0.3293 3.8194
18 1 9.5472 0.1829 5.1234
19 6 5.5637 0.4648 0.9022
20 6 4.0360 0.4930 0.9893
21 1 -0.3633 0.5137 -0.8900
22 1 -0.3633 -1.0278 0.0005
23 1 -0.3633 0.5138 0.8900
24 1 1.8933 -0.5138 -0.8900
25 1 1.8934 -0.5137 0.8900
26 1 1.6766 1.9564 0.8899
27 1 1.6765 1.9563 -0.8900
28 1 3.7340 3.1320 1.2289
29 1 3.6409 3.4759 -0.5155
30 1 5.9577 3.7609 0.3554
31 1 5.8652 2.4536 -0.8494
32 1 7.7056 0.2789 -0.3625
33 1 7.7052 1.9384 -1.0060
34 1 9.1590 1.2950 -0.2059
35 1 11.2259 1.2797 1.7983
36 1 5.8653 0.1265 -0.0892
37 1 5.9585 -0.2173 1.6552
38 1 3.7345 0.8052 1.9892
39 1 3.6417 -0.5023 0.7843
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000042319821.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:37
Heat of formation + Delta-G solvation = -13.479300 kcal
Electronic energy + Delta-G solvation = -16541.422363 eV
Core-core repulsion = 14096.987312 eV
Total energy + Delta-G solvation = -2444.435051 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.42453 -37.71126 -35.06364 -33.63287 -31.80153 -30.79429 -27.66259 -27.30244
-25.05860 -24.61516 -22.50071 -21.54363 -20.19029 -18.21137 -17.38866 -16.47618
-16.28664 -15.80651 -15.80009 -15.45978 -15.00414 -14.67876 -14.40964 -13.74793
-13.66592 -13.25904 -13.05355 -12.91245 -12.64005 -12.51604 -12.37359 -12.35237
-12.19628 -12.01552 -11.89602 -11.64344 -11.44793 -11.15475 -10.85614 -10.48242
-9.26586 -8.84744 -8.10089 -6.21423 1.43312 1.45014 1.52576 2.43509
2.98496 3.18776 3.38213 3.95209 4.05547 4.14738 4.24662 4.42631
4.46951 4.48803 4.50786 4.68149 4.72776 4.73621 4.84083 4.86673
4.89892 4.96332 5.04032 5.07219 5.15376 5.22068 5.24608 5.33409
5.43090 5.52960 5.70353 5.78995 6.09253 6.18767 6.21535 6.49990
6.75195 6.91615 7.47770 8.96021
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.042127 B = 0.006310 C = 0.005768
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 664.503827 B = 4436.542574 C = 4853.348512
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.127 4.127
3 C 0.057 3.943
4 N -0.550 5.550
5 C 0.069 3.931
6 C 0.054 3.946
7 N -0.543 5.543
8 C 0.215 3.785
9 H 0.005 0.995
10 C -0.154 4.154
11 C -0.516 4.516
12 H 0.056 0.944
13 C 0.011 3.989
14 N -0.921 5.921
15 Si 0.960 3.040
16 H -0.271 1.271
17 H -0.284 1.284
18 H -0.273 1.273
19 C 0.068 3.932
20 C 0.064 3.936
21 H 0.061 0.939
22 H 0.062 0.938
23 H 0.054 0.946
24 H 0.065 0.935
25 H 0.060 0.940
26 H 0.032 0.968
27 H 0.083 0.917
28 H 0.034 0.966
29 H 0.094 0.906
30 H 0.067 0.933
31 H 0.027 0.973
32 H 0.028 0.972
33 H 0.023 0.977
34 H 0.061 0.939
35 H 0.261 0.739
36 H 0.022 0.978
37 H 0.065 0.935
38 H 0.030 0.970
39 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.129 -1.277 -3.446 16.542
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.164 4.164
3 C -0.070 4.070
4 N -0.275 5.275
5 C -0.059 4.059
6 C -0.075 4.075
7 N -0.268 5.268
8 C 0.108 3.892
9 H 0.023 0.977
10 C -0.213 4.213
11 C -0.554 4.554
12 H 0.074 0.926
13 C -0.187 4.187
14 N -0.561 5.561
15 Si 0.786 3.214
16 H -0.196 1.196
17 H -0.210 1.210
18 H -0.199 1.199
19 C -0.060 4.060
20 C -0.064 4.064
21 H 0.080 0.920
22 H 0.081 0.919
23 H 0.074 0.926
24 H 0.084 0.916
25 H 0.079 0.921
26 H 0.050 0.950
27 H 0.101 0.899
28 H 0.052 0.948
29 H 0.113 0.887
30 H 0.085 0.915
31 H 0.045 0.955
32 H 0.047 0.953
33 H 0.041 0.959
34 H 0.080 0.920
35 H 0.070 0.930
36 H 0.040 0.960
37 H 0.084 0.916
38 H 0.048 0.952
39 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -15.945 -1.240 -3.465 16.364
hybrid contribution 0.980 -0.311 0.619 1.200
sum -14.966 -1.551 -2.845 15.313
Atomic orbital electron populations
1.21696 0.94094 1.02326 1.02150 1.21660 0.96840 0.95643 1.02282
1.22222 0.85753 0.98056 1.00984 1.62249 1.08530 1.07285 1.49450
1.22080 0.93486 0.90292 1.00045 1.22126 0.95027 0.96552 0.93803
1.62419 1.09341 1.07188 1.47812 1.19045 0.82443 0.94970 0.92788
0.97719 1.22157 1.03133 0.98098 0.97906 1.21325 0.91598 1.27802
1.14688 0.92580 1.25707 0.97024 0.97357 0.98624 1.70012 1.02233
1.44232 1.39619 0.85580 0.76893 0.79334 0.79616 1.19566 1.20981
1.19856 1.21973 0.94022 0.91145 0.98895 1.22213 0.93636 0.97357
0.93172 0.92023 0.91854 0.92645 0.91630 0.92113 0.94979 0.89909
0.94824 0.88731 0.91481 0.95501 0.95260 0.95852 0.92002 0.92966
0.95977 0.91636 0.95204 0.88721
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.16 9.91 71.98 0.71 -1.45 16
2 C -0.13 -2.46 5.20 30.60 0.16 -2.31 16
3 C 0.06 1.27 5.28 86.30 0.46 1.73 16
4 N -0.55 -16.12 4.86 -895.71 -4.35 -20.47 16
5 C 0.07 2.09 5.58 86.31 0.48 2.57 16
6 C 0.05 2.02 5.25 86.31 0.45 2.47 16
7 N -0.54 -24.19 4.69 -874.85 -4.10 -28.29 16
8 C 0.21 11.25 2.35 44.17 0.10 11.36 16
9 H 0.00 0.29 8.11 -2.39 -0.02 0.27 16
10 C -0.15 -7.76 8.27 71.98 0.60 -7.17 16
11 C -0.52 -28.85 7.89 25.60 0.20 -28.65 16
12 H 0.06 3.12 6.78 -2.92 -0.02 3.10 16
13 C 0.01 0.63 5.31 84.66 0.45 1.08 16
14 N -0.92 -53.68 11.31 21.45 0.24 -53.44 16
15 Si 0.96 44.09 29.54 68.60 2.03 46.12 16
16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16
19 C 0.07 2.76 4.86 86.31 0.42 3.18 16
20 C 0.06 2.06 4.93 86.31 0.43 2.48 16
21 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
22 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16
23 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
25 H 0.06 1.25 6.26 -2.39 -0.01 1.23 16
26 H 0.03 0.71 8.08 -2.39 -0.02 0.69 16
27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16
29 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16
30 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16
31 H 0.03 1.06 6.60 -2.39 -0.02 1.04 16
32 H 0.03 1.43 6.46 -2.39 -0.02 1.42 16
33 H 0.02 1.06 6.59 -2.39 -0.02 1.04 16
34 H 0.06 3.44 6.06 -2.38 -0.01 3.43 16
35 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16
36 H 0.02 0.94 6.46 -2.39 -0.02 0.92 16
37 H 0.07 2.87 6.45 -2.39 -0.02 2.85 16
38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16
39 H 0.09 2.63 5.99 -2.39 -0.01 2.62 16
Total: -1.00 -60.47 291.96 -0.73 -61.20
By element:
Atomic # 1 Polarization: 8.58 SS G_CDS: 1.00 Total: 9.58 kcal
Atomic # 6 Polarization: -19.16 SS G_CDS: 4.46 Total: -14.70 kcal
Atomic # 7 Polarization: -93.98 SS G_CDS: -8.21 Total: -102.19 kcal
Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal
Total: -60.47 -0.73 -61.20 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042319821.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.723 kcal
(2) G-P(sol) polarization free energy of solvation -60.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.746 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.479 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds