Wall clock time and date at job start Mon Mar 30 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47461 * 2 1 4 4 H 1.08992 * 109.47196 * 181.85024 * 3 2 1 5 5 C 1.50698 * 109.47106 * 61.84925 * 3 2 1 6 6 H 1.08004 * 120.00450 * 240.00392 * 5 3 2 7 7 C 1.37878 * 119.99816 * 60.00006 * 5 3 2 8 8 N 1.31510 * 120.00350 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47465 * 59.99733 * 9 7 5 11 11 H 1.48500 * 109.47309 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46820 * 299.99769 * 9 7 5 13 13 N 1.46902 * 109.47135 * 301.85404 * 3 2 1 14 14 C 1.46850 * 110.99771 * 305.45214 * 13 3 2 15 15 C 1.53038 * 109.52419 * 174.16266 * 14 13 3 16 16 C 1.53205 * 109.29833 * 59.17672 * 15 14 13 17 17 C 1.53117 * 109.11685 * 302.37160 * 16 15 14 18 18 H 1.09002 * 109.50158 * 297.67415 * 17 16 15 19 19 N 1.46903 * 109.50277 * 177.59745 * 17 16 15 20 20 C 1.46891 * 111.00124 * 85.07659 * 19 17 16 21 21 C 1.46849 * 111.00094 * 181.24451 * 13 3 2 22 22 H 1.08999 * 109.46892 * 304.75238 * 1 2 3 23 23 H 1.09002 * 109.47032 * 64.74498 * 1 2 3 24 24 H 1.08993 * 109.47247 * 184.74724 * 1 2 3 25 25 H 1.08997 * 109.46834 * 239.99958 * 2 1 3 26 26 H 1.08998 * 109.46755 * 120.00364 * 2 1 3 27 27 H 0.96997 * 120.00625 * 180.02562 * 8 7 5 28 28 H 1.09010 * 109.45773 * 294.17838 * 14 13 3 29 29 H 1.08999 * 109.46526 * 54.15131 * 14 13 3 30 30 H 1.08997 * 109.50090 * 179.11763 * 15 14 13 31 31 H 1.08999 * 109.50102 * 299.19783 * 15 14 13 32 32 H 1.09002 * 109.57464 * 182.46056 * 16 15 14 33 33 H 1.09003 * 109.51017 * 62.24162 * 16 15 14 34 34 H 1.00896 * 111.00350 * 209.03462 * 19 17 16 35 35 H 1.08996 * 109.47736 * 180.02562 * 20 19 17 36 36 H 1.09006 * 109.47416 * 300.00124 * 20 19 17 37 37 H 1.09000 * 109.47117 * 60.00222 * 20 19 17 38 38 H 1.08998 * 109.46427 * 65.82023 * 21 13 3 39 39 H 1.09004 * 109.46078 * 305.85503 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 -0.0332 5 6 1.5756 2.1395 1.2527 6 1 0.9521 3.0185 1.1821 7 6 1.9465 1.6550 2.4891 8 7 2.7061 0.5849 2.5753 9 14 1.3702 2.5186 4.0420 10 1 -0.1141 2.5180 4.0870 11 1 1.9023 1.8061 5.2313 12 1 1.8648 3.9189 4.0423 13 7 1.5142 2.1478 -1.1764 14 6 1.8384 1.4240 -2.4124 15 6 1.1540 2.1062 -3.5991 16 6 1.6344 3.5579 -3.6945 17 6 1.3284 4.2750 -2.3767 18 1 0.2509 4.2923 -2.2135 19 7 1.8373 5.6517 -2.4380 20 6 0.8617 6.5457 -3.0757 21 6 2.0078 3.5300 -1.2255 22 1 -0.3633 0.5858 0.8444 23 1 -0.3633 0.4385 -0.9295 24 1 -0.3633 -1.0241 0.0850 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9668 0.2438 3.4450 28 1 2.9179 1.4290 -2.5636 29 1 1.4875 0.3950 -2.3334 30 1 1.4075 1.5780 -4.5182 31 1 0.0736 2.0887 -3.4553 32 1 1.1170 4.0608 -4.5116 33 1 2.7088 3.5745 -3.8774 34 1 2.0876 5.9859 -1.5195 35 1 1.2638 7.5583 -3.1085 36 1 0.6623 6.2013 -4.0905 37 1 -0.0649 6.5409 -2.5017 38 1 3.0864 3.5251 -1.3824 39 1 1.7802 4.0305 -0.2843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053204515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:13 Heat of formation + Delta-G solvation = -3.873541 kcal Electronic energy + Delta-G solvation = -16914.126822 eV Core-core repulsion = 14470.108309 eV Total energy + Delta-G solvation = -2444.018514 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.75518 -35.87983 -33.71657 -31.65569 -30.65767 -28.93054 -26.49958 -24.66437 -23.95749 -22.11693 -21.74987 -19.41593 -18.71428 -16.09531 -15.71740 -15.33577 -14.57701 -14.33073 -14.17065 -13.62003 -13.21119 -13.01716 -12.69012 -12.42579 -12.15180 -11.85535 -11.79767 -11.28773 -10.94515 -10.82689 -10.80253 -10.45565 -10.45110 -10.16695 -10.00336 -9.81230 -9.53596 -9.31615 -8.78532 -8.38171 -8.23833 -7.10158 -5.99291 -4.03029 3.31447 3.36467 3.38784 4.33210 4.43221 5.07964 5.26301 5.32316 5.40737 5.48657 5.53653 5.60932 5.77901 5.92065 5.96193 6.09772 6.20884 6.34276 6.36777 6.41654 6.52790 6.55838 6.64407 6.69337 6.74589 6.84225 7.13683 7.25644 7.35911 7.44263 7.57224 7.68641 7.78566 7.84500 8.23919 8.36717 8.63568 9.01945 9.60779 11.07007 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026135 B = 0.009181 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.085273 B = 3049.101646 C = 3800.818249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.218 3.782 4 H -0.003 1.003 5 C -0.496 4.496 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.527 5.527 14 C 0.050 3.950 15 C -0.115 4.115 16 C -0.102 4.102 17 C 0.087 3.913 18 H 0.048 0.952 19 N -0.694 5.694 20 C 0.031 3.969 21 C 0.066 3.934 22 H 0.059 0.941 23 H 0.039 0.961 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.092 0.908 27 H 0.260 0.740 28 H 0.018 0.982 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.342 0.658 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.020 0.980 38 H 0.025 0.975 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.782 5.138 -9.258 10.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.112 3.888 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.252 5.252 14 C -0.079 4.079 15 C -0.153 4.153 16 C -0.141 4.141 17 C -0.023 4.023 18 H 0.066 0.934 19 N -0.325 5.325 20 C -0.119 4.119 21 C -0.062 4.062 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.844 4.927 -9.640 11.193 hybrid contribution -0.045 0.481 1.514 1.589 sum -2.889 5.408 -8.126 10.179 Atomic orbital electron populations 1.21476 0.97300 0.97618 1.01453 1.21602 0.95142 0.98222 1.00173 1.19240 0.92484 0.90718 0.86325 0.98579 1.21001 1.30896 1.11843 0.89684 0.92230 1.24897 0.95223 0.95102 0.98884 1.69860 1.36347 1.22588 1.24376 0.86647 0.79051 0.79573 0.82642 1.20295 1.21397 1.20439 1.61976 1.60039 1.00853 1.02362 1.22108 0.96729 0.98504 0.90551 1.21596 1.00920 0.95279 0.97519 1.21536 1.01056 0.94993 0.96488 1.21634 0.97595 0.87246 0.95838 0.93361 1.60430 1.42572 1.02433 1.27063 1.22180 0.93773 0.96590 0.99392 1.21998 0.96058 0.91072 0.97121 0.92208 0.94150 0.96566 0.96674 0.88951 0.92958 0.96338 0.90658 0.92438 0.91721 0.93105 0.92059 0.83998 0.91981 0.92096 0.96174 0.95639 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.43 37.16 0.35 -2.31 16 2 C -0.11 -2.69 4.95 -26.73 -0.13 -2.82 16 3 C 0.22 5.40 1.76 -68.87 -0.12 5.28 16 4 H 0.00 -0.09 8.14 -51.93 -0.42 -0.52 16 5 C -0.50 -13.17 6.61 -34.44 -0.23 -13.39 16 6 H 0.06 1.59 6.79 -52.48 -0.36 1.24 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.12 11.31 55.43 0.63 -24.49 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.53 -11.13 3.79 -228.08 -0.86 -12.00 16 14 C 0.05 0.92 4.87 -3.83 -0.02 0.90 16 15 C -0.11 -1.76 6.09 -26.61 -0.16 -1.92 16 16 C -0.10 -1.55 5.50 -26.56 -0.15 -1.70 16 17 C 0.09 1.41 2.65 -67.63 -0.18 1.24 16 18 H 0.05 0.84 7.80 -51.93 -0.41 0.43 16 19 N -0.69 -10.05 6.66 -113.93 -0.76 -10.81 16 20 C 0.03 0.37 10.50 60.06 0.63 1.00 16 21 C 0.07 1.30 4.53 -3.83 -0.02 1.29 16 22 H 0.06 1.43 7.12 -51.93 -0.37 1.06 16 23 H 0.04 0.84 7.28 -51.93 -0.38 0.46 16 24 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.01 0.33 6.31 -51.93 -0.33 0.00 16 26 H 0.09 2.46 6.02 -51.93 -0.31 2.15 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 28 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.08 1.41 5.64 -51.93 -0.29 1.12 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.70 7.53 -51.93 -0.39 0.31 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.34 4.82 8.44 -39.29 -0.33 4.49 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.71 7.49 -51.93 -0.39 0.32 16 37 H 0.02 0.24 8.06 -51.93 -0.42 -0.18 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.70 6.37 -51.93 -0.33 1.37 16 LS Contribution 293.13 15.07 4.42 4.42 Total: -1.00 -27.27 293.13 -8.54 -35.81 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.82 Total: 1.90 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.12 Total: -10.92 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -1.00 Total: -47.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.27 -8.54 -35.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053204515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.932 kcal (2) G-P(sol) polarization free energy of solvation -27.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds