Wall clock time and date at job start Mon Mar 30 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47461 * 2 1 4 4 H 1.08992 * 109.47196 * 181.85024 * 3 2 1 5 5 C 1.50698 * 109.47106 * 61.84925 * 3 2 1 6 6 H 1.08004 * 120.00450 * 240.00392 * 5 3 2 7 7 C 1.37878 * 119.99816 * 60.00006 * 5 3 2 8 8 N 1.31510 * 120.00350 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47465 * 59.99733 * 9 7 5 11 11 H 1.48500 * 109.47309 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46820 * 299.99769 * 9 7 5 13 13 N 1.46902 * 109.47135 * 301.85404 * 3 2 1 14 14 C 1.46850 * 110.99771 * 305.45214 * 13 3 2 15 15 C 1.53038 * 109.52419 * 174.16266 * 14 13 3 16 16 C 1.53205 * 109.29833 * 59.17672 * 15 14 13 17 17 C 1.53117 * 109.11685 * 302.37160 * 16 15 14 18 18 H 1.09002 * 109.50158 * 297.67415 * 17 16 15 19 19 N 1.46903 * 109.50277 * 177.59745 * 17 16 15 20 20 C 1.46891 * 111.00124 * 85.07659 * 19 17 16 21 21 C 1.46849 * 111.00094 * 181.24451 * 13 3 2 22 22 H 1.08999 * 109.46892 * 304.75238 * 1 2 3 23 23 H 1.09002 * 109.47032 * 64.74498 * 1 2 3 24 24 H 1.08993 * 109.47247 * 184.74724 * 1 2 3 25 25 H 1.08997 * 109.46834 * 239.99958 * 2 1 3 26 26 H 1.08998 * 109.46755 * 120.00364 * 2 1 3 27 27 H 0.96997 * 120.00625 * 180.02562 * 8 7 5 28 28 H 1.09010 * 109.45773 * 294.17838 * 14 13 3 29 29 H 1.08999 * 109.46526 * 54.15131 * 14 13 3 30 30 H 1.08997 * 109.50090 * 179.11763 * 15 14 13 31 31 H 1.08999 * 109.50102 * 299.19783 * 15 14 13 32 32 H 1.09002 * 109.57464 * 182.46056 * 16 15 14 33 33 H 1.09003 * 109.51017 * 62.24162 * 16 15 14 34 34 H 1.00896 * 111.00350 * 209.03462 * 19 17 16 35 35 H 1.08996 * 109.47736 * 180.02562 * 20 19 17 36 36 H 1.09006 * 109.47416 * 300.00124 * 20 19 17 37 37 H 1.09000 * 109.47117 * 60.00222 * 20 19 17 38 38 H 1.08998 * 109.46427 * 65.82023 * 21 13 3 39 39 H 1.09004 * 109.46078 * 305.85503 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 -0.0332 5 6 1.5756 2.1395 1.2527 6 1 0.9521 3.0185 1.1821 7 6 1.9465 1.6550 2.4891 8 7 2.7061 0.5849 2.5753 9 14 1.3702 2.5186 4.0420 10 1 -0.1141 2.5180 4.0870 11 1 1.9023 1.8061 5.2313 12 1 1.8648 3.9189 4.0423 13 7 1.5142 2.1478 -1.1764 14 6 1.8384 1.4240 -2.4124 15 6 1.1540 2.1062 -3.5991 16 6 1.6344 3.5579 -3.6945 17 6 1.3284 4.2750 -2.3767 18 1 0.2509 4.2923 -2.2135 19 7 1.8373 5.6517 -2.4380 20 6 0.8617 6.5457 -3.0757 21 6 2.0078 3.5300 -1.2255 22 1 -0.3633 0.5858 0.8444 23 1 -0.3633 0.4385 -0.9295 24 1 -0.3633 -1.0241 0.0850 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9668 0.2438 3.4450 28 1 2.9179 1.4290 -2.5636 29 1 1.4875 0.3950 -2.3334 30 1 1.4075 1.5780 -4.5182 31 1 0.0736 2.0887 -3.4553 32 1 1.1170 4.0608 -4.5116 33 1 2.7088 3.5745 -3.8774 34 1 2.0876 5.9859 -1.5195 35 1 1.2638 7.5583 -3.1085 36 1 0.6623 6.2013 -4.0905 37 1 -0.0649 6.5409 -2.5017 38 1 3.0864 3.5251 -1.3824 39 1 1.7802 4.0305 -0.2843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053204515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:13 Heat of formation + Delta-G solvation = -21.884307 kcal Electronic energy + Delta-G solvation = -16914.907828 eV Core-core repulsion = 14470.108309 eV Total energy + Delta-G solvation = -2444.799519 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.27822 -37.41177 -35.29166 -33.47958 -32.32270 -30.31804 -28.40634 -25.93053 -25.69578 -23.75758 -23.18335 -20.96414 -20.38849 -18.11647 -17.36837 -16.69260 -16.15869 -15.97106 -15.48641 -15.25414 -14.79231 -14.54831 -14.11269 -13.92163 -13.62096 -13.48377 -13.39972 -12.81473 -12.67209 -12.49239 -12.41816 -12.15226 -12.00167 -11.80732 -11.62640 -11.47403 -11.36777 -10.92705 -10.74542 -10.43395 -9.39527 -8.88462 -8.07754 -6.17956 1.41776 1.42789 1.50056 2.42600 3.05476 3.21508 3.61902 3.94953 4.06198 4.19126 4.35837 4.48104 4.56547 4.61141 4.66992 4.69924 4.76790 4.82994 4.89994 4.94807 5.03066 5.08212 5.12353 5.13731 5.24937 5.27941 5.42536 5.49056 5.53493 5.73260 5.78707 5.89931 6.09736 6.33544 6.38416 6.49008 6.79309 6.94625 7.49592 8.97554 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026135 B = 0.009181 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.085273 B = 3049.101646 C = 3800.818249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.109 4.109 3 C 0.224 3.776 4 H -0.048 1.048 5 C -0.502 4.502 6 H 0.054 0.946 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.528 5.528 14 C 0.047 3.953 15 C -0.106 4.106 16 C -0.098 4.098 17 C 0.098 3.902 18 H 0.043 0.957 19 N -0.699 5.699 20 C 0.031 3.969 21 C 0.071 3.929 22 H 0.035 0.965 23 H 0.053 0.947 24 H 0.037 0.963 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.260 0.740 28 H 0.008 0.992 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.342 0.658 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.020 0.980 38 H 0.008 0.992 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 5.997 -10.636 12.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.117 3.883 4 H -0.031 1.031 5 C -0.541 4.541 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.253 5.253 14 C -0.082 4.082 15 C -0.144 4.144 16 C -0.136 4.136 17 C -0.012 4.012 18 H 0.061 0.939 19 N -0.330 5.330 20 C -0.119 4.119 21 C -0.058 4.058 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.159 0.841 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.026 0.974 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.128 5.803 -11.039 13.137 hybrid contribution 0.395 0.229 1.908 1.962 sum -3.733 6.032 -9.132 11.563 Atomic orbital electron populations 1.21324 0.95538 0.98635 1.01010 1.21474 0.96564 0.97287 0.99404 1.19032 0.89840 0.91830 0.87632 1.03081 1.21195 1.30526 1.11661 0.90715 0.92788 1.25620 0.95388 0.95733 1.01742 1.70000 1.37354 1.23779 1.24860 0.85704 0.78721 0.78643 0.79129 1.19715 1.21171 1.19885 1.61959 1.59512 1.01458 1.02356 1.22221 0.96599 0.98695 0.90638 1.21561 1.00608 0.95321 0.96905 1.21511 1.00937 0.94873 0.96272 1.21470 0.96599 0.88141 0.94997 0.93942 1.60484 1.43373 1.01937 1.27231 1.22263 0.93243 0.96960 0.99391 1.21950 0.95373 0.90611 0.97843 0.94559 0.92846 0.94445 0.95161 0.91964 0.93084 0.97379 0.90769 0.89570 0.91353 0.90670 0.92722 0.84054 0.90133 0.91289 0.96126 0.97370 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.65 9.43 71.98 0.68 -3.97 16 2 C -0.11 -5.25 4.95 30.59 0.15 -5.09 16 3 C 0.22 11.40 1.76 44.17 0.08 11.48 16 4 H -0.05 -2.83 8.14 -2.39 -0.02 -2.85 16 5 C -0.50 -27.33 6.61 25.60 0.17 -27.16 16 6 H 0.05 2.94 6.79 -2.91 -0.02 2.92 16 7 C 0.01 0.75 5.30 84.66 0.45 1.20 16 8 N -0.92 -53.14 11.31 21.45 0.24 -52.89 16 9 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.53 -22.43 3.79 -875.50 -3.32 -25.75 16 14 C 0.05 1.68 4.87 86.33 0.42 2.10 16 15 C -0.11 -2.95 6.09 30.68 0.19 -2.76 16 16 C -0.10 -2.70 5.50 30.70 0.17 -2.54 16 17 C 0.10 3.07 2.65 44.97 0.12 3.19 16 18 H 0.04 1.39 7.80 -2.39 -0.02 1.38 16 19 N -0.70 -19.14 6.66 -514.36 -3.43 -22.57 16 20 C 0.03 0.65 10.50 127.69 1.34 2.00 16 21 C 0.07 2.83 4.53 86.32 0.39 3.22 16 22 H 0.04 1.71 7.12 -2.39 -0.02 1.69 16 23 H 0.05 2.13 7.28 -2.39 -0.02 2.11 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.03 1.33 6.31 -2.39 -0.02 1.31 16 26 H 0.06 3.40 6.02 -2.39 -0.01 3.38 16 27 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.07 2.68 5.64 -2.39 -0.01 2.67 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.77 7.53 -2.39 -0.02 1.75 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.34 9.37 8.44 -89.70 -0.76 8.61 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.36 7.49 -2.38 -0.02 1.35 16 37 H 0.02 0.44 8.06 -2.39 -0.02 0.42 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.06 2.56 6.37 -2.38 -0.02 2.55 16 Total: -1.00 -59.27 293.13 -0.07 -59.34 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.25 Total: 14.44 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 4.15 Total: -18.34 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -6.50 Total: -101.21 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -59.27 -0.07 -59.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053204515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.453 kcal (2) G-P(sol) polarization free energy of solvation -59.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds