Wall clock time and date at job start Mon Mar 30 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46811 * 2 1 4 4 H 1.08997 * 109.47431 * 305.51432 * 3 2 1 5 5 C 1.50700 * 109.46988 * 185.51034 * 3 2 1 6 6 H 1.07994 * 120.00194 * 244.59219 * 5 3 2 7 7 C 1.37880 * 119.99758 * 64.60051 * 5 3 2 8 8 N 1.31513 * 119.99847 * 9.00056 * 7 5 3 9 9 Si 1.86804 * 119.99878 * 189.00661 * 7 5 3 10 10 H 1.48504 * 109.47009 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.46818 * 299.99745 * 9 7 5 12 12 H 1.48492 * 109.47012 * 59.99650 * 9 7 5 13 13 N 1.46905 * 109.46902 * 65.51673 * 3 2 1 14 14 C 1.46954 * 111.00257 * 83.41092 * 13 3 2 15 15 H 1.09001 * 109.48652 * 63.22306 * 14 13 3 16 16 C 1.52997 * 109.48887 * 303.15745 * 14 13 3 17 17 C 1.53049 * 109.36108 * 183.18787 * 14 13 3 18 18 N 1.46953 * 109.36593 * 301.59782 * 17 14 13 19 19 C 1.46954 * 110.88062 * 59.32372 * 18 17 14 20 20 C 1.46959 * 110.99727 * 207.21627 * 13 3 2 21 21 H 1.09008 * 109.48242 * 296.79729 * 20 13 3 22 22 C 1.52998 * 109.49110 * 56.83603 * 20 13 3 23 23 H 1.09000 * 109.47409 * 299.99476 * 1 2 3 24 24 H 1.08995 * 109.47623 * 59.99900 * 1 2 3 25 25 H 1.09007 * 109.46667 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47409 * 240.00524 * 2 1 3 27 27 H 1.08995 * 109.47623 * 120.00100 * 2 1 3 28 28 H 0.96993 * 120.00744 * 358.96587 * 8 7 5 29 29 H 1.09000 * 109.47742 * 71.53712 * 16 14 13 30 30 H 1.08997 * 109.46949 * 191.54020 * 16 14 13 31 31 H 1.09005 * 109.47072 * 311.53790 * 16 14 13 32 32 H 1.09007 * 109.48533 * 181.63399 * 17 14 13 33 33 H 1.08998 * 109.50656 * 61.58263 * 17 14 13 34 34 H 1.00900 * 110.99989 * 183.19119 * 18 17 14 35 35 H 1.09005 * 109.48944 * 180.71223 * 19 18 17 36 36 H 1.09004 * 109.50488 * 60.65600 * 19 18 17 37 37 H 1.09000 * 109.46859 * 51.80914 * 22 20 13 38 38 H 1.09005 * 109.46855 * 171.79669 * 22 20 13 39 39 H 1.08999 * 109.47484 * 291.80425 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5982 1.9842 -0.8364 5 6 3.5407 1.4448 -0.1364 6 1 4.1555 1.8197 0.6684 7 6 4.1288 0.9685 -1.2889 8 7 3.3860 0.6783 -2.3347 9 14 5.9807 0.7351 -1.3648 10 1 6.3596 0.2151 -2.7032 11 1 6.6537 2.0379 -1.1307 12 1 6.4006 -0.2337 -0.3208 13 7 1.6619 2.0956 1.2605 14 6 2.6258 1.7836 2.3250 15 1 3.6038 2.1845 2.0588 16 6 2.7247 0.2664 2.4955 17 6 2.1548 2.4153 3.6371 18 7 2.0233 3.8681 3.4588 19 6 1.0594 4.1800 2.3943 20 6 1.5303 3.5483 1.0822 21 1 2.4959 3.9691 0.8015 22 6 0.5082 3.8370 -0.0191 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.4230 0.7852 -2.2904 29 1 3.2474 -0.1621 1.6404 30 1 3.2742 0.0385 3.4088 31 1 1.7227 -0.1582 2.5588 32 1 2.8831 2.2097 4.4216 33 1 1.1893 1.9944 3.9177 34 1 1.7637 4.3166 4.3245 35 1 0.9890 5.2610 2.2728 36 1 0.0812 3.7794 2.6603 37 1 -0.4145 3.2958 0.1907 38 1 0.3022 4.9069 -0.0523 39 1 0.9084 3.5140 -0.9801 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068915348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:20 Heat of formation + Delta-G solvation = 14.413122 kcal Electronic energy + Delta-G solvation = -17618.642646 eV Core-core repulsion = 15175.417101 eV Total energy + Delta-G solvation = -2443.225545 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.15622 -35.44595 -33.04345 -32.35012 -31.05882 -28.08096 -26.22255 -25.91617 -23.69649 -22.36769 -20.51200 -19.76105 -18.97566 -16.54433 -15.90220 -15.19194 -14.70965 -14.15787 -13.69378 -13.53927 -13.22255 -12.74166 -12.54796 -12.26937 -11.90431 -11.63389 -11.35821 -11.23552 -11.02094 -10.85652 -10.74897 -10.51801 -10.25839 -10.10694 -10.06361 -9.81078 -9.60129 -9.07998 -8.81655 -8.18042 -8.11225 -6.95930 -6.29610 -4.02816 3.44480 3.45080 3.63487 4.54514 4.56456 4.87956 5.37772 5.42404 5.59208 5.64552 5.83847 5.93975 5.96237 6.09035 6.14755 6.19765 6.26433 6.29720 6.33885 6.37617 6.48378 6.63337 6.70168 6.80866 6.95645 7.00074 7.06471 7.12664 7.24129 7.32991 7.49454 7.58634 7.65870 8.00026 8.21683 8.44707 8.63175 8.88901 9.68426 11.04675 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.011279 C = 0.010403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.839947 B = 2481.856970 C = 2690.852710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.197 3.803 4 H 0.034 0.966 5 C -0.623 4.623 6 H 0.059 0.941 7 C 0.027 3.973 8 N -0.909 5.909 9 Si 1.058 2.942 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.521 5.521 14 C 0.092 3.908 15 H 0.061 0.939 16 C -0.143 4.143 17 C 0.062 3.938 18 N -0.692 5.692 19 C 0.067 3.933 20 C 0.087 3.913 21 H 0.046 0.954 22 C -0.140 4.140 23 H 0.051 0.949 24 H 0.035 0.965 25 H 0.027 0.973 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.272 0.728 29 H 0.088 0.912 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.332 0.668 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 3.086 8.729 10.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.090 3.910 4 H 0.051 0.949 5 C -0.662 4.662 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.544 5.544 9 Si 0.887 3.113 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.246 5.246 14 C -0.017 4.017 15 H 0.079 0.921 16 C -0.200 4.200 17 C -0.067 4.067 18 N -0.321 5.321 19 C -0.062 4.062 20 C -0.022 4.022 21 H 0.064 0.936 22 C -0.198 4.198 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.148 0.852 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.995 2.471 7.449 8.401 hybrid contribution -1.288 0.632 1.200 1.870 sum -4.283 3.103 8.649 10.138 Atomic orbital electron populations 1.21700 0.98699 0.98603 1.00587 1.22163 0.92828 0.99945 1.02229 1.19433 0.94286 0.90693 0.86566 0.94860 1.22587 0.92473 1.46346 1.04804 0.92303 1.25613 1.06282 0.93856 0.92086 1.70790 1.07808 1.46025 1.29824 0.83699 0.75172 0.76472 0.75982 1.20951 1.21692 1.21468 1.62593 1.46781 1.06820 1.08442 1.21448 0.95849 0.94966 0.89459 0.92106 1.22124 1.01032 0.95620 1.01269 1.22162 0.99133 0.87033 0.98400 1.60467 1.51303 1.10556 1.09805 1.22038 0.93041 0.98919 0.92222 1.21401 0.97858 0.90105 0.92867 0.93550 1.21830 0.99129 0.99685 0.99164 0.92996 0.94606 0.95426 0.92330 0.91214 0.91699 0.89335 0.94596 0.92932 0.91597 0.95401 0.85199 0.91570 0.95194 0.92650 0.93462 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.80 37.15 0.36 -2.37 16 2 C -0.13 -3.02 4.75 -26.73 -0.13 -3.15 16 3 C 0.20 4.66 1.08 -68.86 -0.07 4.59 16 4 H 0.03 0.87 4.79 -51.93 -0.25 0.62 16 5 C -0.62 -16.44 6.52 -34.44 -0.22 -16.66 16 6 H 0.06 1.59 5.18 -52.49 -0.27 1.32 16 7 C 0.03 0.75 5.16 -17.82 -0.09 0.65 16 8 N -0.91 -26.43 12.95 55.43 0.72 -25.71 16 9 Si 1.06 24.90 29.91 -169.99 -5.08 19.82 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.52 -10.80 3.74 -212.06 -0.79 -11.59 16 14 C 0.09 1.83 1.97 -67.66 -0.13 1.69 16 15 H 0.06 1.41 5.73 -51.93 -0.30 1.11 16 16 C -0.14 -2.72 7.37 37.16 0.27 -2.44 16 17 C 0.06 1.04 5.97 -3.77 -0.02 1.01 16 18 N -0.69 -10.97 6.90 -113.64 -0.78 -11.75 16 19 C 0.07 1.09 5.99 -3.77 -0.02 1.07 16 20 C 0.09 1.69 2.49 -67.66 -0.17 1.53 16 21 H 0.05 1.05 8.13 -51.92 -0.42 0.62 16 22 C -0.14 -2.50 8.74 37.16 0.32 -2.18 16 23 H 0.05 1.00 7.77 -51.93 -0.40 0.60 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.48 6.30 -51.93 -0.33 1.16 16 27 H 0.07 1.53 3.61 -51.93 -0.19 1.35 16 28 H 0.27 7.88 6.10 -40.82 -0.25 7.63 16 29 H 0.09 1.93 5.11 -51.93 -0.27 1.66 16 30 H 0.04 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.05 0.97 7.14 -51.93 -0.37 0.60 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.33 4.28 8.90 -39.29 -0.35 3.94 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 39 H 0.06 1.28 6.30 -51.93 -0.33 0.96 16 LS Contribution 282.96 15.07 4.26 4.26 Total: -1.00 -27.98 282.96 -7.90 -35.88 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.32 Total: 5.34 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 0.10 Total: -16.25 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.86 Total: -49.06 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.98 -7.90 -35.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.295 kcal (2) G-P(sol) polarization free energy of solvation -27.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds