Wall clock time and date at job start Mon Mar 30 2020 03:10:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53009 * 109.46811 * 2 1
4 4 H 1.08997 * 109.47431 * 305.51432 * 3 2 1
5 5 C 1.50700 * 109.46988 * 185.51034 * 3 2 1
6 6 H 1.07994 * 120.00194 * 244.59219 * 5 3 2
7 7 C 1.37880 * 119.99758 * 64.60051 * 5 3 2
8 8 N 1.31513 * 119.99847 * 9.00056 * 7 5 3
9 9 Si 1.86804 * 119.99878 * 189.00661 * 7 5 3
10 10 H 1.48504 * 109.47009 * 179.97438 * 9 7 5
11 11 H 1.48496 * 109.46818 * 299.99745 * 9 7 5
12 12 H 1.48492 * 109.47012 * 59.99650 * 9 7 5
13 13 N 1.46905 * 109.46902 * 65.51673 * 3 2 1
14 14 C 1.46954 * 111.00257 * 83.41092 * 13 3 2
15 15 H 1.09001 * 109.48652 * 63.22306 * 14 13 3
16 16 C 1.52997 * 109.48887 * 303.15745 * 14 13 3
17 17 C 1.53049 * 109.36108 * 183.18787 * 14 13 3
18 18 N 1.46953 * 109.36593 * 301.59782 * 17 14 13
19 19 C 1.46954 * 110.88062 * 59.32372 * 18 17 14
20 20 C 1.46959 * 110.99727 * 207.21627 * 13 3 2
21 21 H 1.09008 * 109.48242 * 296.79729 * 20 13 3
22 22 C 1.52998 * 109.49110 * 56.83603 * 20 13 3
23 23 H 1.09000 * 109.47409 * 299.99476 * 1 2 3
24 24 H 1.08995 * 109.47623 * 59.99900 * 1 2 3
25 25 H 1.09007 * 109.46667 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.47409 * 240.00524 * 2 1 3
27 27 H 1.08995 * 109.47623 * 120.00100 * 2 1 3
28 28 H 0.96993 * 120.00744 * 358.96587 * 8 7 5
29 29 H 1.09000 * 109.47742 * 71.53712 * 16 14 13
30 30 H 1.08997 * 109.46949 * 191.54020 * 16 14 13
31 31 H 1.09005 * 109.47072 * 311.53790 * 16 14 13
32 32 H 1.09007 * 109.48533 * 181.63399 * 17 14 13
33 33 H 1.08998 * 109.50656 * 61.58263 * 17 14 13
34 34 H 1.00900 * 110.99989 * 183.19119 * 18 17 14
35 35 H 1.09005 * 109.48944 * 180.71223 * 19 18 17
36 36 H 1.09004 * 109.50488 * 60.65600 * 19 18 17
37 37 H 1.09000 * 109.46859 * 51.80914 * 22 20 13
38 38 H 1.09005 * 109.46855 * 171.79669 * 22 20 13
39 39 H 1.08999 * 109.47484 * 291.80425 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.5982 1.9842 -0.8364
5 6 3.5407 1.4448 -0.1364
6 1 4.1555 1.8197 0.6684
7 6 4.1288 0.9685 -1.2889
8 7 3.3860 0.6783 -2.3347
9 14 5.9807 0.7351 -1.3648
10 1 6.3596 0.2151 -2.7032
11 1 6.6537 2.0379 -1.1307
12 1 6.4006 -0.2337 -0.3208
13 7 1.6619 2.0956 1.2605
14 6 2.6258 1.7836 2.3250
15 1 3.6038 2.1845 2.0588
16 6 2.7247 0.2664 2.4955
17 6 2.1548 2.4153 3.6371
18 7 2.0233 3.8681 3.4588
19 6 1.0594 4.1800 2.3943
20 6 1.5303 3.5483 1.0822
21 1 2.4959 3.9691 0.8015
22 6 0.5082 3.8370 -0.0191
23 1 -0.3634 0.5137 0.8900
24 1 -0.3634 0.5138 -0.8899
25 1 -0.3633 -1.0278 0.0005
26 1 1.8933 -0.5137 -0.8900
27 1 1.8933 -0.5138 0.8899
28 1 2.4230 0.7852 -2.2904
29 1 3.2474 -0.1621 1.6404
30 1 3.2742 0.0385 3.4088
31 1 1.7227 -0.1582 2.5588
32 1 2.8831 2.2097 4.4216
33 1 1.1893 1.9944 3.9177
34 1 1.7637 4.3166 4.3245
35 1 0.9890 5.2610 2.2728
36 1 0.0812 3.7794 2.6603
37 1 -0.4145 3.2958 0.1907
38 1 0.3022 4.9069 -0.0523
39 1 0.9084 3.5140 -0.9801
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000068915348.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:20
Heat of formation + Delta-G solvation = -5.138271 kcal
Electronic energy + Delta-G solvation = -17619.490458 eV
Core-core repulsion = 15175.417101 eV
Total energy + Delta-G solvation = -2444.073357 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.75539 -37.07972 -34.54494 -34.20994 -32.80576 -29.69643 -27.89312 -27.45821
-25.54448 -23.95440 -22.06171 -21.51852 -20.66348 -18.46540 -17.37852 -16.76292
-16.29952 -15.74216 -15.55820 -15.09865 -14.81535 -14.41773 -14.12420 -13.86962
-13.47321 -13.31993 -13.00061 -12.63486 -12.59703 -12.55265 -12.51099 -12.29501
-12.01420 -11.87153 -11.63183 -11.48650 -11.30753 -10.90248 -10.70958 -10.18859
-9.39520 -8.77269 -8.46041 -6.20471 1.50081 1.55895 1.74627 2.57667
3.24916 3.27951 3.33845 3.99211 4.13426 4.25923 4.41301 4.47605
4.50536 4.53268 4.61053 4.68860 4.76533 4.80592 4.83007 4.84875
4.90184 5.08039 5.14042 5.23165 5.24763 5.31260 5.42158 5.49120
5.50568 5.66967 5.75890 6.01165 6.06271 6.20360 6.55537 6.62626
6.70430 6.78034 7.57492 8.85661
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.024645 B = 0.011279 C = 0.010403
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1135.839947 B = 2481.856970 C = 2690.852710
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.128 4.128
3 C 0.202 3.798
4 H 0.007 0.993
5 C -0.619 4.619
6 H 0.049 0.951
7 C -0.022 4.022
8 N -0.935 5.935
9 Si 1.098 2.902
10 H -0.288 1.288
11 H -0.282 1.282
12 H -0.272 1.272
13 N -0.513 5.513
14 C 0.088 3.912
15 H 0.023 0.977
16 C -0.135 4.135
17 C 0.071 3.929
18 N -0.700 5.700
19 C 0.077 3.923
20 C 0.081 3.919
21 H 0.006 0.994
22 C -0.131 4.131
23 H 0.060 0.940
24 H 0.029 0.971
25 H 0.047 0.953
26 H 0.024 0.976
27 H 0.077 0.923
28 H 0.260 0.740
29 H 0.055 0.945
30 H 0.063 0.937
31 H 0.059 0.941
32 H 0.086 0.914
33 H 0.038 0.962
34 H 0.354 0.646
35 H 0.089 0.911
36 H 0.041 0.959
37 H 0.062 0.938
38 H 0.076 0.924
39 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.044 3.542 11.040 12.644
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.166 4.166
3 C 0.095 3.905
4 H 0.025 0.975
5 C -0.658 4.658
6 H 0.067 0.933
7 C -0.221 4.221
8 N -0.573 5.573
9 Si 0.923 3.077
10 H -0.214 1.214
11 H -0.208 1.208
12 H -0.197 1.197
13 N -0.238 5.238
14 C -0.021 4.021
15 H 0.041 0.959
16 C -0.193 4.193
17 C -0.058 4.058
18 N -0.333 5.333
19 C -0.053 4.053
20 C -0.028 4.028
21 H 0.024 0.976
22 C -0.189 4.189
23 H 0.079 0.921
24 H 0.048 0.952
25 H 0.066 0.934
26 H 0.043 0.957
27 H 0.095 0.905
28 H 0.071 0.929
29 H 0.073 0.927
30 H 0.082 0.918
31 H 0.078 0.922
32 H 0.104 0.896
33 H 0.056 0.944
34 H 0.173 0.827
35 H 0.107 0.893
36 H 0.059 0.941
37 H 0.082 0.918
38 H 0.095 0.905
39 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges -3.734 2.944 9.798 10.891
hybrid contribution -1.059 0.540 0.517 1.297
sum -4.794 3.484 10.315 11.896
Atomic orbital electron populations
1.21565 0.96152 0.99988 1.00653 1.22040 0.95042 0.98682 1.00871
1.19238 0.92531 0.91398 0.87373 0.97509 1.22858 0.94160 1.44765
1.03999 0.93264 1.26774 1.09512 0.93764 0.92097 1.70892 1.07285
1.48352 1.30778 0.83158 0.71368 0.77092 0.76127 1.21353 1.20755
1.19708 1.62645 1.46431 1.07604 1.07121 1.21507 0.93912 0.95765
0.90955 0.95906 1.21984 1.01333 0.94799 1.01153 1.22030 1.00029
0.87331 0.96427 1.60381 1.51617 1.10279 1.10986 1.21933 0.93173
0.99933 0.90240 1.21538 0.96494 0.89217 0.95598 0.97589 1.21738
0.98624 1.01661 0.96889 0.92102 0.95227 0.93377 0.95682 0.90500
0.92949 0.92665 0.91818 0.92219 0.89602 0.94390 0.82669 0.89322
0.94106 0.91847 0.90496 0.95109
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.87 9.80 71.98 0.71 -4.16 16
2 C -0.13 -5.89 4.75 30.60 0.15 -5.74 16
3 C 0.20 9.83 1.08 44.17 0.05 9.88 16
4 H 0.01 0.39 4.79 -2.39 -0.01 0.38 16
5 C -0.62 -33.69 6.52 25.60 0.17 -33.53 16
6 H 0.05 2.75 5.18 -2.91 -0.02 2.74 16
7 C -0.02 -1.24 5.16 84.66 0.44 -0.80 16
8 N -0.94 -56.47 12.95 21.45 0.28 -56.19 16
9 Si 1.10 51.17 29.91 68.60 2.05 53.22 16
10 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16
11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
13 N -0.51 -21.10 3.74 -824.82 -3.08 -24.18 16
14 C 0.09 3.41 1.97 44.92 0.09 3.50 16
15 H 0.02 1.07 5.73 -2.39 -0.01 1.06 16
16 C -0.14 -4.96 7.37 71.98 0.53 -4.43 16
17 C 0.07 2.16 5.97 86.31 0.52 2.67 16
18 N -0.70 -20.04 6.90 -513.44 -3.54 -23.59 16
19 C 0.08 2.26 5.99 86.31 0.52 2.78 16
20 C 0.08 3.11 2.49 44.92 0.11 3.22 16
21 H 0.01 0.28 8.13 -2.38 -0.02 0.26 16
22 C -0.13 -4.62 8.74 71.98 0.63 -3.99 16
23 H 0.06 2.23 7.77 -2.39 -0.02 2.21 16
24 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16
25 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16
26 H 0.02 1.30 6.30 -2.39 -0.02 1.28 16
27 H 0.08 3.39 3.61 -2.39 -0.01 3.38 16
28 H 0.26 15.86 6.10 -92.71 -0.57 15.30 16
29 H 0.05 2.40 5.11 -2.39 -0.01 2.39 16
30 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16
31 H 0.06 2.09 7.14 -2.38 -0.02 2.07 16
32 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16
33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16
34 H 0.35 7.70 8.90 -89.69 -0.80 6.90 16
35 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16
36 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16
37 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
38 H 0.08 2.20 8.13 -2.38 -0.02 2.18 16
39 H 0.03 1.26 6.30 -2.39 -0.02 1.25 16
Total: -1.00 -62.37 282.96 0.04 -62.34
By element:
Atomic # 1 Polarization: 18.56 SS G_CDS: 0.44 Total: 18.99 kcal
Atomic # 6 Polarization: -34.49 SS G_CDS: 3.90 Total: -30.59 kcal
Atomic # 7 Polarization: -97.61 SS G_CDS: -6.35 Total: -103.96 kcal
Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.22 kcal
Total: -62.37 0.04 -62.34 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068915348.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.201 kcal
(2) G-P(sol) polarization free energy of solvation -62.374 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.174 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.339 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.138 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds