Wall clock time and date at job start Mon Mar 30 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46811 * 2 1 4 4 H 1.08997 * 109.47431 * 305.51432 * 3 2 1 5 5 C 1.50700 * 109.46988 * 185.51034 * 3 2 1 6 6 H 1.07994 * 120.00194 * 244.59219 * 5 3 2 7 7 C 1.37880 * 119.99758 * 64.60051 * 5 3 2 8 8 N 1.31513 * 119.99847 * 9.00056 * 7 5 3 9 9 Si 1.86804 * 119.99878 * 189.00661 * 7 5 3 10 10 H 1.48504 * 109.47009 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.46818 * 299.99745 * 9 7 5 12 12 H 1.48492 * 109.47012 * 59.99650 * 9 7 5 13 13 N 1.46905 * 109.46902 * 65.51673 * 3 2 1 14 14 C 1.46954 * 111.00257 * 83.41092 * 13 3 2 15 15 H 1.09001 * 109.48652 * 63.22306 * 14 13 3 16 16 C 1.52997 * 109.48887 * 303.15745 * 14 13 3 17 17 C 1.53049 * 109.36108 * 183.18787 * 14 13 3 18 18 N 1.46953 * 109.36593 * 301.59782 * 17 14 13 19 19 C 1.46954 * 110.88062 * 59.32372 * 18 17 14 20 20 C 1.46959 * 110.99727 * 207.21627 * 13 3 2 21 21 H 1.09008 * 109.48242 * 296.79729 * 20 13 3 22 22 C 1.52998 * 109.49110 * 56.83603 * 20 13 3 23 23 H 1.09000 * 109.47409 * 299.99476 * 1 2 3 24 24 H 1.08995 * 109.47623 * 59.99900 * 1 2 3 25 25 H 1.09007 * 109.46667 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47409 * 240.00524 * 2 1 3 27 27 H 1.08995 * 109.47623 * 120.00100 * 2 1 3 28 28 H 0.96993 * 120.00744 * 358.96587 * 8 7 5 29 29 H 1.09000 * 109.47742 * 71.53712 * 16 14 13 30 30 H 1.08997 * 109.46949 * 191.54020 * 16 14 13 31 31 H 1.09005 * 109.47072 * 311.53790 * 16 14 13 32 32 H 1.09007 * 109.48533 * 181.63399 * 17 14 13 33 33 H 1.08998 * 109.50656 * 61.58263 * 17 14 13 34 34 H 1.00900 * 110.99989 * 183.19119 * 18 17 14 35 35 H 1.09005 * 109.48944 * 180.71223 * 19 18 17 36 36 H 1.09004 * 109.50488 * 60.65600 * 19 18 17 37 37 H 1.09000 * 109.46859 * 51.80914 * 22 20 13 38 38 H 1.09005 * 109.46855 * 171.79669 * 22 20 13 39 39 H 1.08999 * 109.47484 * 291.80425 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5982 1.9842 -0.8364 5 6 3.5407 1.4448 -0.1364 6 1 4.1555 1.8197 0.6684 7 6 4.1288 0.9685 -1.2889 8 7 3.3860 0.6783 -2.3347 9 14 5.9807 0.7351 -1.3648 10 1 6.3596 0.2151 -2.7032 11 1 6.6537 2.0379 -1.1307 12 1 6.4006 -0.2337 -0.3208 13 7 1.6619 2.0956 1.2605 14 6 2.6258 1.7836 2.3250 15 1 3.6038 2.1845 2.0588 16 6 2.7247 0.2664 2.4955 17 6 2.1548 2.4153 3.6371 18 7 2.0233 3.8681 3.4588 19 6 1.0594 4.1800 2.3943 20 6 1.5303 3.5483 1.0822 21 1 2.4959 3.9691 0.8015 22 6 0.5082 3.8370 -0.0191 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.4230 0.7852 -2.2904 29 1 3.2474 -0.1621 1.6404 30 1 3.2742 0.0385 3.4088 31 1 1.7227 -0.1582 2.5588 32 1 2.8831 2.2097 4.4216 33 1 1.1893 1.9944 3.9177 34 1 1.7637 4.3166 4.3245 35 1 0.9890 5.2610 2.2728 36 1 0.0812 3.7794 2.6603 37 1 -0.4145 3.2958 0.1907 38 1 0.3022 4.9069 -0.0523 39 1 0.9084 3.5140 -0.9801 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068915348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:20 Heat of formation + Delta-G solvation = -5.138271 kcal Electronic energy + Delta-G solvation = -17619.490458 eV Core-core repulsion = 15175.417101 eV Total energy + Delta-G solvation = -2444.073357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75539 -37.07972 -34.54494 -34.20994 -32.80576 -29.69643 -27.89312 -27.45821 -25.54448 -23.95440 -22.06171 -21.51852 -20.66348 -18.46540 -17.37852 -16.76292 -16.29952 -15.74216 -15.55820 -15.09865 -14.81535 -14.41773 -14.12420 -13.86962 -13.47321 -13.31993 -13.00061 -12.63486 -12.59703 -12.55265 -12.51099 -12.29501 -12.01420 -11.87153 -11.63183 -11.48650 -11.30753 -10.90248 -10.70958 -10.18859 -9.39520 -8.77269 -8.46041 -6.20471 1.50081 1.55895 1.74627 2.57667 3.24916 3.27951 3.33845 3.99211 4.13426 4.25923 4.41301 4.47605 4.50536 4.53268 4.61053 4.68860 4.76533 4.80592 4.83007 4.84875 4.90184 5.08039 5.14042 5.23165 5.24763 5.31260 5.42158 5.49120 5.50568 5.66967 5.75890 6.01165 6.06271 6.20360 6.55537 6.62626 6.70430 6.78034 7.57492 8.85661 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.011279 C = 0.010403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.839947 B = 2481.856970 C = 2690.852710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.128 4.128 3 C 0.202 3.798 4 H 0.007 0.993 5 C -0.619 4.619 6 H 0.049 0.951 7 C -0.022 4.022 8 N -0.935 5.935 9 Si 1.098 2.902 10 H -0.288 1.288 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.513 5.513 14 C 0.088 3.912 15 H 0.023 0.977 16 C -0.135 4.135 17 C 0.071 3.929 18 N -0.700 5.700 19 C 0.077 3.923 20 C 0.081 3.919 21 H 0.006 0.994 22 C -0.131 4.131 23 H 0.060 0.940 24 H 0.029 0.971 25 H 0.047 0.953 26 H 0.024 0.976 27 H 0.077 0.923 28 H 0.260 0.740 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.354 0.646 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 3.542 11.040 12.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 C 0.095 3.905 4 H 0.025 0.975 5 C -0.658 4.658 6 H 0.067 0.933 7 C -0.221 4.221 8 N -0.573 5.573 9 Si 0.923 3.077 10 H -0.214 1.214 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.238 5.238 14 C -0.021 4.021 15 H 0.041 0.959 16 C -0.193 4.193 17 C -0.058 4.058 18 N -0.333 5.333 19 C -0.053 4.053 20 C -0.028 4.028 21 H 0.024 0.976 22 C -0.189 4.189 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.173 0.827 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.734 2.944 9.798 10.891 hybrid contribution -1.059 0.540 0.517 1.297 sum -4.794 3.484 10.315 11.896 Atomic orbital electron populations 1.21565 0.96152 0.99988 1.00653 1.22040 0.95042 0.98682 1.00871 1.19238 0.92531 0.91398 0.87373 0.97509 1.22858 0.94160 1.44765 1.03999 0.93264 1.26774 1.09512 0.93764 0.92097 1.70892 1.07285 1.48352 1.30778 0.83158 0.71368 0.77092 0.76127 1.21353 1.20755 1.19708 1.62645 1.46431 1.07604 1.07121 1.21507 0.93912 0.95765 0.90955 0.95906 1.21984 1.01333 0.94799 1.01153 1.22030 1.00029 0.87331 0.96427 1.60381 1.51617 1.10279 1.10986 1.21933 0.93173 0.99933 0.90240 1.21538 0.96494 0.89217 0.95598 0.97589 1.21738 0.98624 1.01661 0.96889 0.92102 0.95227 0.93377 0.95682 0.90500 0.92949 0.92665 0.91818 0.92219 0.89602 0.94390 0.82669 0.89322 0.94106 0.91847 0.90496 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.80 71.98 0.71 -4.16 16 2 C -0.13 -5.89 4.75 30.60 0.15 -5.74 16 3 C 0.20 9.83 1.08 44.17 0.05 9.88 16 4 H 0.01 0.39 4.79 -2.39 -0.01 0.38 16 5 C -0.62 -33.69 6.52 25.60 0.17 -33.53 16 6 H 0.05 2.75 5.18 -2.91 -0.02 2.74 16 7 C -0.02 -1.24 5.16 84.66 0.44 -0.80 16 8 N -0.94 -56.47 12.95 21.45 0.28 -56.19 16 9 Si 1.10 51.17 29.91 68.60 2.05 53.22 16 10 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 N -0.51 -21.10 3.74 -824.82 -3.08 -24.18 16 14 C 0.09 3.41 1.97 44.92 0.09 3.50 16 15 H 0.02 1.07 5.73 -2.39 -0.01 1.06 16 16 C -0.14 -4.96 7.37 71.98 0.53 -4.43 16 17 C 0.07 2.16 5.97 86.31 0.52 2.67 16 18 N -0.70 -20.04 6.90 -513.44 -3.54 -23.59 16 19 C 0.08 2.26 5.99 86.31 0.52 2.78 16 20 C 0.08 3.11 2.49 44.92 0.11 3.22 16 21 H 0.01 0.28 8.13 -2.38 -0.02 0.26 16 22 C -0.13 -4.62 8.74 71.98 0.63 -3.99 16 23 H 0.06 2.23 7.77 -2.39 -0.02 2.21 16 24 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.02 1.30 6.30 -2.39 -0.02 1.28 16 27 H 0.08 3.39 3.61 -2.39 -0.01 3.38 16 28 H 0.26 15.86 6.10 -92.71 -0.57 15.30 16 29 H 0.05 2.40 5.11 -2.39 -0.01 2.39 16 30 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 31 H 0.06 2.09 7.14 -2.38 -0.02 2.07 16 32 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.35 7.70 8.90 -89.69 -0.80 6.90 16 35 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.08 2.20 8.13 -2.38 -0.02 2.18 16 39 H 0.03 1.26 6.30 -2.39 -0.02 1.25 16 Total: -1.00 -62.37 282.96 0.04 -62.34 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.44 Total: 18.99 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 3.90 Total: -30.59 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -6.35 Total: -103.96 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.22 kcal Total: -62.37 0.04 -62.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.201 kcal (2) G-P(sol) polarization free energy of solvation -62.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds